Wall clock time and date at job start Tue Mar 31 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48511 * 109.46942 * 270.00335 * 3 2 1 5 5 H 1.48496 * 109.47216 * 29.99723 * 3 2 1 6 6 H 1.48499 * 109.47387 * 150.00273 * 3 2 1 7 7 C 1.37871 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00216 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47470 * 180.02562 * 9 7 2 11 11 O 1.21277 * 119.99685 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00221 * 180.02562 * 10 9 7 13 13 C 1.47214 * 121.30416 * 180.02562 * 12 10 9 14 14 C 1.53233 * 107.79737 * 115.74360 * 13 12 10 15 15 C 1.50433 * 110.61963 * 47.78391 * 14 13 12 16 16 N 1.33135 * 118.27805 * 159.59154 * 15 14 13 17 17 C 1.32069 * 121.22570 * 178.75468 * 16 15 14 18 18 O 1.35451 * 119.17880 * 180.02562 * 17 16 15 19 19 N 1.32323 * 121.63760 * 0.02562 * 17 16 15 20 20 C 1.32633 * 120.40894 * 0.29972 * 19 17 16 21 21 O 1.35515 * 120.39101 * 179.97438 * 20 19 17 22 22 C 1.37405 * 122.90401 * 339.16942 * 15 14 13 23 23 C 1.46788 * 121.30179 * 359.97438 * 12 10 9 24 24 H 0.97002 * 119.99933 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46991 * 60.00496 * 9 7 2 26 26 H 1.09002 * 109.47478 * 300.00900 * 9 7 2 27 27 H 1.09005 * 109.74598 * 235.71786 * 13 12 10 28 28 H 1.09003 * 109.74456 * 356.38743 * 13 12 10 29 29 H 1.09002 * 109.83203 * 287.14898 * 14 13 12 30 30 H 1.08997 * 108.74818 * 167.72782 * 14 13 12 31 31 H 0.96703 * 113.99980 * 269.97370 * 18 17 16 32 32 H 0.96696 * 114.00022 * 90.00224 * 21 20 19 33 33 H 1.09005 * 109.45909 * 104.32045 * 23 12 10 34 34 H 1.08998 * 109.45511 * 344.35270 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 8 3.4226 -3.4230 -0.0010 12 7 1.7809 -4.9153 -0.0011 13 6 2.7119 -6.0557 -0.0005 14 6 2.5161 -6.8195 1.3134 15 6 1.0540 -7.0590 1.5742 16 7 0.7148 -8.0332 2.4159 17 6 -0.5503 -8.2780 2.7056 18 8 -0.8484 -9.2791 3.5679 19 7 -1.5336 -7.5696 2.1745 20 6 -1.2697 -6.5877 1.3228 21 8 -2.2771 -5.8628 0.7787 22 6 0.0595 -6.3127 0.9895 23 6 0.3442 -5.2162 -0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.4977 -6.7063 -0.8485 28 1 3.7380 -5.6935 -0.0643 29 1 2.9390 -6.2482 2.1398 30 1 3.0295 -7.7782 1.2412 31 1 -0.9801 -10.1379 3.1433 32 1 -2.5221 -5.0817 1.2933 33 1 0.0409 -5.5390 -0.9970 34 1 -0.2139 -4.3221 0.2766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143196727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:28 Heat of formation + Delta-G solvation = -90.851470 kcal Electronic energy + Delta-G solvation = -21596.763986 eV Core-core repulsion = 18108.521113 eV Total energy + Delta-G solvation = -3488.242873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.73957 -40.73605 -39.31280 -38.41631 -37.08227 -35.13797 -34.69135 -32.64883 -32.41752 -30.64502 -27.18025 -26.36381 -25.18654 -24.27178 -22.91399 -20.71392 -20.10547 -19.33467 -19.01614 -18.54983 -17.46057 -17.27336 -17.07332 -16.64427 -16.38407 -16.18116 -15.45855 -15.21235 -14.83592 -14.50624 -14.26187 -14.07327 -13.57144 -13.49965 -13.27752 -13.17096 -12.82778 -12.81884 -12.55840 -12.48756 -12.06176 -12.01156 -11.49549 -11.38685 -10.60086 -10.56660 -10.47833 -10.25250 -9.70476 -8.23563 -6.29694 -0.48190 -0.30367 1.42389 1.42960 1.54854 1.75263 1.84358 1.97090 2.16023 2.44475 2.54990 3.04997 3.12537 3.41148 3.60306 3.77531 3.99879 4.11327 4.20506 4.32050 4.39145 4.64400 4.65458 4.84408 4.86046 5.05090 5.06280 5.27392 5.47200 5.60723 5.76699 6.04251 6.38459 6.45317 6.47605 6.75735 6.82638 7.33584 7.43222 8.88096 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025133 B = 0.004562 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.821029 B = 6135.796275 C = 6834.603260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.012 3.988 10 C 0.526 3.474 11 O -0.575 6.575 12 N -0.624 5.624 13 C 0.108 3.892 14 C -0.080 4.080 15 C 0.219 3.781 16 N -0.543 5.543 17 C 0.512 3.488 18 O -0.461 6.461 19 N -0.567 5.567 20 C 0.399 3.601 21 O -0.471 6.471 22 C -0.223 4.223 23 C 0.171 3.829 24 H 0.267 0.733 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.433 0.567 32 H 0.432 0.568 33 H 0.106 0.894 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 -17.505 1.539 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.073 0.927 9 C -0.027 4.027 10 C 0.317 3.683 11 O -0.454 6.454 12 N -0.359 5.359 13 C -0.014 4.014 14 C -0.118 4.118 15 C 0.077 3.923 16 N -0.271 5.271 17 C 0.207 3.793 18 O -0.268 6.268 19 N -0.304 5.304 20 C 0.209 3.791 21 O -0.283 6.283 22 C -0.229 4.229 23 C 0.047 3.953 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.148 0.852 31 H 0.297 0.703 32 H 0.297 0.703 33 H 0.124 0.876 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.759 -18.009 2.197 18.351 hybrid contribution 0.038 1.431 -0.281 1.459 sum -2.721 -16.578 1.916 16.909 Atomic orbital electron populations 1.69998 1.06909 1.28009 1.51087 1.25685 0.95805 1.02391 0.94533 0.85545 0.78551 0.79025 0.78524 1.19749 1.20082 1.20048 1.21377 0.93704 0.91302 1.51195 0.92744 1.19085 0.94243 0.90538 0.98857 1.21484 0.89887 0.83918 0.72994 1.90521 1.19029 1.84649 1.51171 1.48285 1.07283 1.05575 1.74726 1.21843 0.95648 0.86852 0.97053 1.20907 0.88225 1.03625 0.99049 1.21176 0.97423 0.86323 0.87425 1.68038 1.20857 1.20691 1.17470 1.19936 0.82965 0.89926 0.86428 1.84692 1.90737 1.20302 1.31039 1.67530 1.39678 1.10696 1.12510 1.18991 0.85911 0.88049 0.86148 1.84653 1.51683 1.42715 1.49211 1.21491 0.93598 1.02809 1.05038 1.20230 0.81161 0.96064 0.97845 0.92425 0.93490 0.93946 0.88075 0.88676 0.89037 0.85191 0.70306 0.70283 0.87596 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.47 13.29 21.45 0.28 -51.18 16 2 C 0.01 0.82 5.46 84.65 0.46 1.29 16 3 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.54 -30.46 8.92 25.60 0.23 -30.23 16 8 H 0.05 3.26 6.75 -2.91 -0.02 3.25 16 9 C 0.01 0.58 3.88 29.10 0.11 0.69 16 10 C 0.53 22.64 7.71 87.66 0.68 23.32 16 11 O -0.57 -28.66 14.94 -3.02 -0.05 -28.70 16 12 N -0.62 -19.66 2.93 -823.52 -2.42 -22.08 16 13 C 0.11 2.63 6.46 86.32 0.56 3.18 16 14 C -0.08 -1.71 6.15 29.84 0.18 -1.53 16 15 C 0.22 5.39 6.64 42.08 0.28 5.67 16 16 N -0.54 -13.79 10.33 -302.43 -3.12 -16.91 16 17 C 0.51 12.78 8.71 180.64 1.57 14.36 16 18 O -0.46 -9.13 13.64 -87.49 -1.19 -10.32 16 19 N -0.57 -14.86 10.50 -426.38 -4.48 -19.34 16 20 C 0.40 9.73 7.79 84.94 0.66 10.39 16 21 O -0.47 -9.69 12.89 -88.17 -1.14 -10.83 16 22 C -0.22 -5.51 5.83 -19.76 -0.12 -5.62 16 23 C 0.17 4.44 5.67 85.51 0.48 4.92 16 24 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.05 2.27 8.11 -2.38 -0.02 2.25 16 26 H 0.04 2.07 7.58 -2.39 -0.02 2.05 16 27 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.09 2.57 7.07 -2.39 -0.02 2.56 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.43 3.56 9.06 -74.06 -0.67 2.88 16 32 H 0.43 5.49 9.06 -74.06 -0.67 4.82 16 33 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.10 2.87 6.10 -2.39 -0.01 2.86 16 Total: -1.00 -74.16 297.20 -5.13 -79.30 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -0.16 Total: 7.57 kcal Atomic # 6 Polarization: 21.34 SS G_CDS: 5.10 Total: 26.44 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -9.73 Total: -109.52 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -2.37 Total: -49.85 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -74.16 -5.13 -79.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143196727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.553 kcal (2) G-P(sol) polarization free energy of solvation -74.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds