Wall clock time and date at job start Tue Mar 31 2020 01:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99858 * 2 1 4 4 H 1.48499 * 109.47422 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47381 * 300.00313 * 3 2 1 6 6 H 1.48503 * 109.46962 * 60.00068 * 3 2 1 7 7 C 1.37874 * 120.00564 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00520 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99593 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.46998 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99927 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00135 * 180.02562 * 10 9 7 13 13 C 1.40149 * 120.00026 * 185.53057 * 12 10 9 14 14 C 1.38295 * 120.02123 * 24.82901 * 13 12 10 15 15 C 1.39693 * 119.83541 * 179.97438 * 14 13 12 16 16 C 1.47618 * 120.05813 * 179.97438 * 15 14 13 17 17 O 1.21581 * 120.00103 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99329 * 179.97438 * 16 15 14 19 19 N 1.36607 * 119.99374 * 179.97438 * 18 16 15 20 20 C 1.39714 * 119.87499 * 359.97438 * 15 14 13 21 21 C 1.37794 * 120.03891 * 359.72630 * 20 15 14 22 22 C 1.38819 * 120.15989 * 0.55177 * 21 20 15 23 23 O 1.35785 * 119.93379 * 179.71928 * 22 21 20 24 24 H 0.96998 * 120.00183 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46895 * 60.00581 * 9 7 2 26 26 H 1.08994 * 109.47243 * 300.00237 * 9 7 2 27 27 H 0.97006 * 120.00180 * 5.52811 * 12 10 9 28 28 H 1.08001 * 120.08492 * 359.95323 * 14 13 12 29 29 H 0.96995 * 120.00687 * 0.02562 * 18 16 15 30 30 H 1.00900 * 110.99625 * 180.02562 * 19 18 16 31 31 H 1.00895 * 110.99842 * 303.95633 * 19 18 16 32 32 H 1.08005 * 119.98358 * 180.02562 * 20 15 14 33 33 H 1.07997 * 119.91874 * 180.29274 * 21 20 15 34 34 H 0.96701 * 114.00167 * 269.72818 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 8 3.4231 -3.4228 -0.0001 12 7 1.7813 -4.9152 -0.0011 13 6 2.6868 -5.9785 0.1159 14 6 3.9115 -5.7804 0.7270 15 6 4.8108 -6.8432 0.8420 16 6 6.1196 -6.6371 1.4928 17 8 6.4159 -5.5415 1.9289 18 7 6.9861 -7.6635 1.6035 19 7 8.1976 -7.4726 2.2053 20 6 4.4692 -8.1014 0.3398 21 6 3.2450 -8.2945 -0.2626 22 6 2.3524 -7.2381 -0.3828 23 8 1.1497 -7.4322 -0.9823 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 0.8313 -5.0938 -0.0824 28 1 4.1722 -4.8064 1.1140 29 1 6.7499 -8.5374 1.2552 30 1 8.7354 -8.3263 2.2140 31 1 8.7099 -6.7273 1.7582 32 1 5.1630 -8.9244 0.4281 33 1 2.9810 -9.2691 -0.6458 34 1 1.1554 -7.2733 -1.9361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:27 Heat of formation + Delta-G solvation = -57.996811 kcal Electronic energy + Delta-G solvation = -20969.093786 eV Core-core repulsion = 17482.275597 eV Total energy + Delta-G solvation = -3486.818189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70155 -39.60352 -38.41856 -36.54650 -35.79559 -34.30281 -33.01976 -30.78333 -30.43219 -28.90313 -27.93716 -24.09071 -23.63858 -22.52743 -20.92514 -19.81305 -19.01250 -18.48809 -17.26616 -16.73667 -16.45632 -15.89751 -15.72720 -15.28266 -15.02490 -14.68391 -14.48419 -14.30465 -14.10718 -13.64511 -13.02471 -12.66881 -12.40796 -12.23370 -12.11214 -11.43066 -11.29622 -10.91583 -10.79010 -10.72979 -10.23682 -10.02466 -9.99930 -9.32567 -8.97107 -8.71200 -8.48385 -8.34711 -7.87917 -6.10555 -4.10886 0.68669 1.30373 2.63658 2.70952 3.32852 3.39988 3.42645 3.45710 3.55537 3.79423 4.08590 4.46133 4.51483 4.72171 4.78673 4.94531 5.28239 5.34324 5.38806 5.72142 5.94105 6.05475 6.22808 6.26890 6.38395 6.56762 6.97290 7.06266 7.10992 7.20389 7.35248 7.51423 7.79265 7.93126 8.23943 8.34856 8.90473 9.00735 9.54834 11.01682 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.004546 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.246719 B = 6157.513926 C = 7645.805619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.902 3.098 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.078 0.922 9 C 0.008 3.992 10 C 0.510 3.490 11 O -0.514 6.514 12 N -0.681 5.681 13 C 0.142 3.858 14 C -0.063 4.063 15 C -0.119 4.119 16 C 0.562 3.438 17 O -0.511 6.511 18 N -0.580 5.580 19 N -0.601 5.601 20 C -0.108 4.108 21 C -0.129 4.129 22 C 0.086 3.914 23 O -0.493 6.493 24 H 0.262 0.738 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.414 0.586 28 H 0.169 0.831 29 H 0.399 0.601 30 H 0.355 0.645 31 H 0.347 0.653 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 -21.334 -2.103 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.096 0.904 9 C -0.031 4.031 10 C 0.302 3.698 11 O -0.387 6.387 12 N -0.326 5.326 13 C 0.045 3.955 14 C -0.084 4.084 15 C -0.124 4.124 16 C 0.349 3.651 17 O -0.385 6.385 18 N -0.327 5.327 19 N -0.228 5.228 20 C -0.128 4.128 21 C -0.148 4.148 22 C 0.037 3.963 23 O -0.303 6.303 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.251 0.749 28 H 0.186 0.814 29 H 0.237 0.763 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 7.771 -20.074 -0.568 21.533 hybrid contribution 0.397 -0.007 -1.669 1.716 sum 8.167 -20.080 -2.238 21.793 Atomic orbital electron populations 1.69958 1.06067 1.26996 1.50878 1.24994 0.94918 0.99572 0.94974 0.86356 0.80405 0.82794 0.77507 1.19366 1.20975 1.20910 1.21185 0.94372 0.88872 1.50578 0.90426 1.19295 0.93941 0.89961 0.99951 1.22480 0.91622 0.82892 0.72782 1.90562 1.17726 1.83991 1.46437 1.44189 1.10138 1.04973 1.73335 1.18240 0.91932 0.87667 0.97710 1.21601 0.91285 1.00757 0.94794 1.19599 0.94700 0.94566 1.03574 1.18060 0.83703 0.83671 0.79710 1.90853 1.76493 1.24147 1.46994 1.44611 1.12689 1.13393 1.62002 1.59924 0.98110 1.12154 1.52592 1.20924 0.96746 0.95594 0.99552 1.21013 0.92978 0.98845 1.01937 1.18341 0.86777 0.91652 0.99488 1.84769 1.27973 1.91218 1.26319 0.92837 0.93011 0.92794 0.74938 0.81397 0.76262 0.83191 0.83733 0.85804 0.84699 0.75297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.67 8.92 -34.44 -0.31 -14.97 16 8 H 0.08 2.33 6.75 -52.48 -0.35 1.98 16 9 C 0.01 0.19 5.46 -29.03 -0.16 0.03 16 10 C 0.51 11.34 7.63 -10.99 -0.08 11.26 16 11 O -0.51 -13.03 12.63 5.54 0.07 -12.96 16 12 N -0.68 -11.78 5.29 -9.78 -0.05 -11.83 16 13 C 0.14 2.30 6.44 -83.55 -0.54 1.76 16 14 C -0.06 -1.12 8.26 -39.02 -0.32 -1.44 16 15 C -0.12 -1.71 5.87 -104.97 -0.62 -2.33 16 16 C 0.56 8.51 7.83 -12.43 -0.10 8.41 16 17 O -0.51 -10.29 16.56 5.29 0.09 -10.20 16 18 N -0.58 -5.89 6.42 30.48 0.20 -5.70 16 19 N -0.60 -5.52 10.03 60.35 0.61 -4.92 16 20 C -0.11 -1.10 9.53 -39.19 -0.37 -1.48 16 21 C -0.13 -1.32 9.96 -39.53 -0.39 -1.71 16 22 C 0.09 1.08 6.73 -38.88 -0.26 0.82 16 23 O -0.49 -5.26 12.89 -19.07 -0.25 -5.51 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.41 6.07 8.34 -40.82 -0.34 5.73 16 28 H 0.17 3.68 5.36 -52.49 -0.28 3.39 16 29 H 0.40 2.51 6.85 -185.15 -1.27 1.24 16 30 H 0.35 1.73 9.21 -181.36 -1.67 0.06 16 31 H 0.35 3.26 9.00 -181.36 -1.63 1.63 16 32 H 0.12 0.75 6.39 -52.48 -0.34 0.42 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.39 2.58 9.06 45.56 0.41 3.00 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -37.21 303.66 -8.17 -45.38 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.87 Total: 7.52 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -3.25 Total: 1.86 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 1.49 Total: -47.80 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.09 Total: -28.66 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -37.21 -8.17 -45.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.617 kcal (2) G-P(sol) polarization free energy of solvation -37.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds