Wall clock time and date at job start Tue Mar 31 2020 01:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99858 * 2 1 4 4 H 1.48499 * 109.47422 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47381 * 300.00313 * 3 2 1 6 6 H 1.48503 * 109.46962 * 60.00068 * 3 2 1 7 7 C 1.37874 * 120.00564 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00520 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99593 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.46998 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99927 * 0.02562 * 10 9 7 12 12 N 1.34770 * 120.00135 * 180.02562 * 10 9 7 13 13 C 1.40149 * 120.00026 * 185.53057 * 12 10 9 14 14 C 1.38295 * 120.02123 * 24.82901 * 13 12 10 15 15 C 1.39693 * 119.83541 * 179.97438 * 14 13 12 16 16 C 1.47618 * 120.05813 * 179.97438 * 15 14 13 17 17 O 1.21581 * 120.00103 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99329 * 179.97438 * 16 15 14 19 19 N 1.36607 * 119.99374 * 179.97438 * 18 16 15 20 20 C 1.39714 * 119.87499 * 359.97438 * 15 14 13 21 21 C 1.37794 * 120.03891 * 359.72630 * 20 15 14 22 22 C 1.38819 * 120.15989 * 0.55177 * 21 20 15 23 23 O 1.35785 * 119.93379 * 179.71928 * 22 21 20 24 24 H 0.96998 * 120.00183 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46895 * 60.00581 * 9 7 2 26 26 H 1.08994 * 109.47243 * 300.00237 * 9 7 2 27 27 H 0.97006 * 120.00180 * 5.52811 * 12 10 9 28 28 H 1.08001 * 120.08492 * 359.95323 * 14 13 12 29 29 H 0.96995 * 120.00687 * 0.02562 * 18 16 15 30 30 H 1.00900 * 110.99625 * 180.02562 * 19 18 16 31 31 H 1.00895 * 110.99842 * 303.95633 * 19 18 16 32 32 H 1.08005 * 119.98358 * 180.02562 * 20 15 14 33 33 H 1.07997 * 119.91874 * 180.29274 * 21 20 15 34 34 H 0.96701 * 114.00167 * 269.72818 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 8 3.4231 -3.4228 -0.0001 12 7 1.7813 -4.9152 -0.0011 13 6 2.6868 -5.9785 0.1159 14 6 3.9115 -5.7804 0.7270 15 6 4.8108 -6.8432 0.8420 16 6 6.1196 -6.6371 1.4928 17 8 6.4159 -5.5415 1.9289 18 7 6.9861 -7.6635 1.6035 19 7 8.1976 -7.4726 2.2053 20 6 4.4692 -8.1014 0.3398 21 6 3.2450 -8.2945 -0.2626 22 6 2.3524 -7.2381 -0.3828 23 8 1.1497 -7.4322 -0.9823 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 0.8313 -5.0938 -0.0824 28 1 4.1722 -4.8064 1.1140 29 1 6.7499 -8.5374 1.2552 30 1 8.7354 -8.3263 2.2140 31 1 8.7099 -6.7273 1.7582 32 1 5.1630 -8.9244 0.4281 33 1 2.9810 -9.2691 -0.6458 34 1 1.1554 -7.2733 -1.9361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:27 Heat of formation + Delta-G solvation = -91.337224 kcal Electronic energy + Delta-G solvation = -20970.539535 eV Core-core repulsion = 17482.275597 eV Total energy + Delta-G solvation = -3488.263937 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.90468 -40.84699 -39.74320 -37.49944 -36.85712 -35.76467 -35.17078 -31.96543 -31.73838 -30.45790 -29.11027 -25.98621 -24.69919 -23.83556 -22.00067 -21.36369 -20.09091 -19.41743 -18.66477 -18.16720 -18.02339 -17.28819 -16.85049 -16.61351 -16.30261 -16.26776 -15.83954 -15.63762 -15.19014 -14.95453 -14.57571 -14.25413 -13.73585 -13.65323 -13.27678 -13.13756 -12.83215 -12.63156 -12.32042 -12.09851 -11.92825 -11.57748 -11.49263 -11.23473 -10.66312 -10.53837 -9.89514 -9.24855 -9.05552 -8.29766 -6.37094 -0.35659 0.22719 1.36831 1.38253 1.52537 1.53138 1.74589 1.87286 2.11066 2.42047 2.70919 3.05873 3.13517 3.55967 3.79718 4.04866 4.10681 4.16891 4.34791 4.44611 4.84364 4.96176 5.04851 5.13970 5.17764 5.23774 5.37146 5.66765 5.70491 5.77962 5.97147 6.18265 6.50812 6.58504 6.74493 6.75808 7.22471 7.34709 7.43009 8.82508 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.004546 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.246719 B = 6157.513926 C = 7645.805619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.012 3.988 10 C 0.515 3.485 11 O -0.554 6.554 12 N -0.663 5.663 13 C 0.104 3.896 14 C -0.096 4.096 15 C -0.133 4.133 16 C 0.553 3.447 17 O -0.579 6.579 18 N -0.552 5.552 19 N -0.615 5.615 20 C -0.074 4.074 21 C -0.115 4.115 22 C 0.108 3.892 23 O -0.493 6.493 24 H 0.269 0.731 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.426 0.574 28 H 0.114 0.886 29 H 0.422 0.578 30 H 0.380 0.620 31 H 0.348 0.652 32 H 0.178 0.822 33 H 0.184 0.816 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.632 -24.973 -3.098 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.787 3.213 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.027 4.027 10 C 0.306 3.694 11 O -0.431 6.431 12 N -0.310 5.310 13 C 0.008 3.992 14 C -0.118 4.118 15 C -0.138 4.138 16 C 0.341 3.659 17 O -0.458 6.458 18 N -0.298 5.298 19 N -0.245 5.245 20 C -0.094 4.094 21 C -0.133 4.133 22 C 0.060 3.940 23 O -0.307 6.307 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.265 0.735 28 H 0.131 0.869 29 H 0.265 0.735 30 H 0.198 0.802 31 H 0.164 0.836 32 H 0.196 0.804 33 H 0.201 0.799 34 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 7.889 -23.851 -1.595 25.172 hybrid contribution 0.373 0.897 -1.363 1.674 sum 8.262 -22.954 -2.958 24.574 Atomic orbital electron populations 1.70015 1.06987 1.28170 1.50916 1.25730 0.95849 1.02588 0.94318 0.85433 0.78453 0.78977 0.78400 1.20392 1.19312 1.19721 1.21362 0.93619 0.91227 1.51604 0.92890 1.19096 0.94009 0.90130 0.99483 1.21857 0.90333 0.84234 0.72997 1.90564 1.18967 1.84978 1.48630 1.43624 1.11026 1.03878 1.72431 1.18421 0.91610 0.88667 1.00474 1.21253 0.93417 0.99920 0.97184 1.19600 0.93895 0.95569 1.04764 1.18316 0.84531 0.83654 0.79418 1.90820 1.77839 1.26948 1.50194 1.44275 1.12306 1.13150 1.60114 1.59797 0.98012 1.13885 1.52853 1.21457 0.97491 0.94642 0.95780 1.21528 0.91764 0.99729 1.00284 1.18449 0.87316 0.90345 0.97931 1.84721 1.26974 1.90835 1.28138 0.92225 0.92929 0.93546 0.73529 0.86852 0.73508 0.80219 0.83645 0.80433 0.79918 0.72725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.20 13.29 21.45 0.28 -53.92 16 2 C 0.01 0.83 5.46 84.65 0.46 1.29 16 3 Si 0.96 46.46 29.54 68.60 2.03 48.49 16 4 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -32.55 8.92 25.60 0.23 -32.32 16 8 H 0.05 3.40 6.75 -2.91 -0.02 3.38 16 9 C 0.01 0.64 5.46 29.11 0.16 0.80 16 10 C 0.51 24.46 7.63 87.66 0.67 25.13 16 11 O -0.55 -30.63 12.63 -3.10 -0.04 -30.67 16 12 N -0.66 -23.84 5.29 -303.24 -1.60 -25.45 16 13 C 0.10 3.40 6.44 38.14 0.25 3.65 16 14 C -0.10 -3.60 8.26 22.64 0.19 -3.42 16 15 C -0.13 -3.73 5.87 -20.09 -0.12 -3.85 16 16 C 0.55 16.84 7.83 86.72 0.68 17.52 16 17 O -0.58 -24.94 16.56 -3.97 -0.07 -25.00 16 18 N -0.55 -9.96 6.42 -175.75 -1.13 -11.09 16 19 N -0.61 -10.26 10.03 37.02 0.37 -9.89 16 20 C -0.07 -1.17 9.53 22.52 0.21 -0.95 16 21 C -0.11 -1.71 9.96 22.30 0.22 -1.49 16 22 C 0.11 2.39 6.73 22.72 0.15 2.55 16 23 O -0.49 -8.70 12.89 -91.14 -1.18 -9.87 16 24 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 25 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.43 12.66 8.34 -92.70 -0.77 11.89 16 28 H 0.11 5.56 5.36 -2.91 -0.02 5.55 16 29 H 0.42 3.39 6.85 -215.50 -1.48 1.91 16 30 H 0.38 2.62 9.21 -210.55 -1.94 0.68 16 31 H 0.35 6.31 9.00 -210.56 -1.90 4.42 16 32 H 0.18 0.85 6.39 -2.91 -0.02 0.83 16 33 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.41 3.83 9.06 -74.06 -0.67 3.16 16 Total: -1.00 -89.13 303.66 -3.75 -92.87 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -5.52 Total: 15.62 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 3.10 Total: 8.90 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -2.07 Total: -100.34 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -1.28 Total: -65.54 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -89.13 -3.75 -92.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.537 kcal (2) G-P(sol) polarization free energy of solvation -89.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds