Wall clock time and date at job start Tue Mar 31 2020 01:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48498 * 109.47059 * 240.00059 * 3 2 1 5 5 H 1.48506 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47253 * 119.99928 * 3 2 1 7 7 C 1.40053 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00199 * 173.70188 * 7 2 1 9 9 C 1.41270 * 120.00068 * 353.97152 * 7 2 1 10 10 C 1.40718 * 120.15871 * 185.85917 * 9 7 2 11 11 N 1.31904 * 119.92873 * 179.97438 * 10 9 7 12 12 C 1.32159 * 120.27171 * 359.97438 * 11 10 9 13 13 C 1.39920 * 120.32117 * 359.97438 * 12 11 10 14 14 N 1.38828 * 119.96703 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00014 * 0.02562 * 14 13 12 16 16 C 1.50699 * 109.47115 * 179.97438 * 15 14 13 17 17 O 1.20760 * 119.99704 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00080 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.47380 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47408 * 179.97438 * 19 18 16 21 21 O 1.20822 * 120.00053 * 0.02562 * 20 19 18 22 22 O 1.34234 * 120.00088 * 180.02562 * 20 19 18 23 23 N 1.32257 * 120.06333 * 359.74979 * 13 12 11 24 24 H 0.97005 * 120.00305 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.03787 * 359.95401 * 10 9 7 26 26 H 1.08002 * 119.83465 * 179.97438 * 12 11 10 27 27 H 0.97002 * 119.99759 * 179.97438 * 14 13 12 28 28 H 1.09004 * 109.46923 * 299.99318 * 15 14 13 29 29 H 1.08993 * 109.47267 * 59.99461 * 15 14 13 30 30 H 1.09006 * 109.47150 * 299.99340 * 18 16 15 31 31 H 1.09004 * 109.47250 * 59.99430 * 18 16 15 32 32 H 1.08998 * 109.46932 * 300.00254 * 19 18 16 33 33 H 1.09004 * 109.47086 * 59.99707 * 19 18 16 34 34 H 0.96693 * 116.99658 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2762 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0075 -1.2129 0.0005 8 1 3.0827 -1.2158 -0.1021 9 6 1.3071 -2.4329 0.1296 10 6 2.0132 -3.6437 0.2544 11 7 1.3546 -4.7802 0.3751 12 6 0.0330 -4.7870 0.3799 13 6 -0.6801 -3.5894 0.2576 14 7 -2.0682 -3.6052 0.2630 15 6 -2.7858 -4.8754 0.3973 16 6 -4.2706 -4.6183 0.3752 17 8 -4.6864 -3.4904 0.2597 18 6 -5.2364 -5.7686 0.4972 19 6 -6.6705 -5.2380 0.4473 20 6 -7.6364 -6.3884 0.5687 21 8 -7.2203 -7.5169 0.6838 22 8 -8.9589 -6.1594 0.5489 23 7 -0.0329 -2.4419 0.1413 24 1 -0.4851 0.8401 -0.0004 25 1 3.0931 -3.6426 0.2510 26 1 -0.4991 -5.7217 0.4788 27 1 -2.5630 -2.7751 0.1786 28 1 -2.5183 -5.5330 -0.4298 29 1 -2.5134 -5.3486 1.3406 30 1 -5.0776 -6.4653 -0.3260 31 1 -5.0721 -6.2821 1.4446 32 1 -6.8291 -4.5416 1.2706 33 1 -6.8351 -4.7243 -0.4999 34 1 -9.5388 -6.9289 0.6302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160873858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:47 Heat of formation + Delta-G solvation = -85.561849 kcal Electronic energy + Delta-G solvation = -20316.719140 eV Core-core repulsion = 16828.705641 eV Total energy + Delta-G solvation = -3488.013498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71239 -39.74513 -38.77563 -36.55483 -35.06846 -33.86322 -33.43452 -31.67783 -29.81822 -27.91466 -25.85822 -25.28408 -22.41592 -21.72145 -20.90969 -19.70260 -18.46394 -17.54305 -17.36547 -16.75133 -16.49409 -15.59146 -15.58077 -15.27132 -15.06755 -14.47081 -14.42397 -14.05861 -13.45017 -13.21321 -13.15385 -12.91832 -12.38023 -12.27123 -11.91471 -11.63104 -11.50095 -11.35084 -11.28484 -10.96309 -10.69297 -10.42694 -9.93370 -9.82027 -9.65705 -9.39326 -8.37895 -7.39480 -6.77199 -6.44551 -4.66649 1.78735 1.83566 2.59067 2.70721 3.04635 3.06448 3.12036 3.27188 3.65136 3.87860 4.21989 4.24339 4.63290 4.71593 4.94074 5.09077 5.28974 5.33822 5.48709 5.53093 5.55170 5.90834 6.05040 6.12313 6.29221 6.49633 6.73520 7.03484 7.10648 7.30412 7.50856 7.57227 7.92321 8.02227 8.42875 8.54945 8.83590 9.40030 9.99448 10.19121 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.003191 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.537912 B = 8771.484300 C = 9732.809113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.067 3.933 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.415 4.415 8 H 0.091 0.909 9 C 0.245 3.755 10 C -0.106 4.106 11 N -0.407 5.407 12 C -0.174 4.174 13 C 0.374 3.626 14 N -0.729 5.729 15 C 0.090 3.910 16 C 0.353 3.647 17 O -0.443 6.443 18 C -0.158 4.158 19 C -0.107 4.107 20 C 0.481 3.519 21 O -0.517 6.517 22 O -0.517 6.517 23 N -0.507 5.507 24 H 0.276 0.724 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.406 0.594 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 -7.179 0.832 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.447 4.447 8 H 0.109 0.891 9 C 0.117 3.883 10 C -0.276 4.276 11 N -0.118 5.118 12 C -0.336 4.336 13 C 0.131 3.869 14 N -0.369 5.369 15 C -0.037 4.037 16 C 0.227 3.773 17 O -0.315 6.315 18 C -0.196 4.196 19 C -0.145 4.145 20 C 0.324 3.676 21 O -0.405 6.405 22 O -0.329 6.329 23 N -0.234 5.234 24 H 0.087 0.913 25 H 0.148 0.852 26 H 0.138 0.862 27 H 0.243 0.757 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -14.207 -6.621 0.790 15.694 hybrid contribution -0.279 0.371 0.048 0.467 sum -14.486 -6.250 0.838 15.799 Atomic orbital electron populations 1.70097 1.07352 1.28258 1.27039 1.26148 0.94949 1.01361 0.93571 0.86315 0.80058 0.80031 0.80049 1.18778 1.20199 1.18754 1.19606 0.94916 0.89250 1.40941 0.89129 1.19098 0.87608 0.93273 0.88344 1.22914 0.98986 0.89283 1.16432 1.67497 1.08187 1.30188 1.05945 1.21904 0.90843 0.95630 1.25187 1.19435 0.84590 0.92147 0.90765 1.43861 1.02837 1.07313 1.82903 1.21402 0.89421 0.89332 1.03535 1.24700 0.91983 0.89662 0.70913 1.90431 1.80779 1.25363 1.34963 1.21895 0.92115 0.98733 1.06829 1.21142 0.91016 0.95034 1.07293 1.23493 0.81955 0.90568 0.71599 1.90744 1.79037 1.25139 1.45583 1.84548 1.18753 1.44495 1.85090 1.69015 1.08356 1.22337 1.23662 0.91316 0.85203 0.86233 0.75668 0.89027 0.89046 0.86983 0.86991 0.86792 0.86795 0.73058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.49 11.51 55.55 0.64 -17.85 16 2 C 0.07 1.66 5.49 -17.34 -0.10 1.56 16 3 Si 0.91 18.12 29.56 -169.99 -5.03 13.10 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.41 -10.84 9.15 -37.75 -0.35 -11.19 16 8 H 0.09 2.17 7.86 -52.48 -0.41 1.75 16 9 C 0.24 6.73 6.54 -84.83 -0.55 6.18 16 10 C -0.11 -2.72 10.97 -16.58 -0.18 -2.91 16 11 N -0.41 -10.28 10.47 -12.11 -0.13 -10.41 16 12 C -0.17 -4.09 10.49 -16.78 -0.18 -4.27 16 13 C 0.37 9.06 7.66 -155.01 -1.19 7.87 16 14 N -0.73 -14.39 5.69 -61.46 -0.35 -14.74 16 15 C 0.09 1.22 5.31 -5.19 -0.03 1.20 16 16 C 0.35 4.09 7.23 -29.04 -0.21 3.88 16 17 O -0.44 -6.57 15.29 6.00 0.09 -6.48 16 18 C -0.16 -1.28 4.93 -27.88 -0.14 -1.42 16 19 C -0.11 -0.84 5.10 -27.88 -0.14 -0.98 16 20 C 0.48 4.04 8.33 36.00 0.30 4.34 16 21 O -0.52 -5.76 16.74 -18.75 -0.31 -6.07 16 22 O -0.52 -3.37 13.42 -39.27 -0.53 -3.90 16 23 N -0.51 -13.98 8.09 -10.14 -0.08 -14.06 16 24 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 25 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 26 H 0.12 2.38 6.70 -52.49 -0.35 2.03 16 27 H 0.41 8.49 7.57 -40.82 -0.31 8.19 16 28 H 0.09 1.12 7.93 -51.93 -0.41 0.71 16 29 H 0.09 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.11 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.11 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.41 0.97 9.10 45.56 0.41 1.38 16 LS Contribution 309.15 15.07 4.66 4.66 Total: -1.00 -34.21 309.15 -6.52 -40.73 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -2.72 Total: 10.76 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -2.76 Total: 4.26 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.08 Total: -57.05 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.75 Total: -16.45 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.21 -6.52 -40.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160873858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.836 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds