Wall clock time and date at job start Tue Mar 31 2020 01:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48498 * 109.47059 * 240.00059 * 3 2 1 5 5 H 1.48506 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47253 * 119.99928 * 3 2 1 7 7 C 1.40053 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00199 * 173.70188 * 7 2 1 9 9 C 1.41270 * 120.00068 * 353.97152 * 7 2 1 10 10 C 1.40718 * 120.15871 * 185.85917 * 9 7 2 11 11 N 1.31904 * 119.92873 * 179.97438 * 10 9 7 12 12 C 1.32159 * 120.27171 * 359.97438 * 11 10 9 13 13 C 1.39920 * 120.32117 * 359.97438 * 12 11 10 14 14 N 1.38828 * 119.96703 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00014 * 0.02562 * 14 13 12 16 16 C 1.50699 * 109.47115 * 179.97438 * 15 14 13 17 17 O 1.20760 * 119.99704 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00080 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.47380 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47408 * 179.97438 * 19 18 16 21 21 O 1.20822 * 120.00053 * 0.02562 * 20 19 18 22 22 O 1.34234 * 120.00088 * 180.02562 * 20 19 18 23 23 N 1.32257 * 120.06333 * 359.74979 * 13 12 11 24 24 H 0.97005 * 120.00305 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.03787 * 359.95401 * 10 9 7 26 26 H 1.08002 * 119.83465 * 179.97438 * 12 11 10 27 27 H 0.97002 * 119.99759 * 179.97438 * 14 13 12 28 28 H 1.09004 * 109.46923 * 299.99318 * 15 14 13 29 29 H 1.08993 * 109.47267 * 59.99461 * 15 14 13 30 30 H 1.09006 * 109.47150 * 299.99340 * 18 16 15 31 31 H 1.09004 * 109.47250 * 59.99430 * 18 16 15 32 32 H 1.08998 * 109.46932 * 300.00254 * 19 18 16 33 33 H 1.09004 * 109.47086 * 59.99707 * 19 18 16 34 34 H 0.96693 * 116.99658 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2762 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0075 -1.2129 0.0005 8 1 3.0827 -1.2158 -0.1021 9 6 1.3071 -2.4329 0.1296 10 6 2.0132 -3.6437 0.2544 11 7 1.3546 -4.7802 0.3751 12 6 0.0330 -4.7870 0.3799 13 6 -0.6801 -3.5894 0.2576 14 7 -2.0682 -3.6052 0.2630 15 6 -2.7858 -4.8754 0.3973 16 6 -4.2706 -4.6183 0.3752 17 8 -4.6864 -3.4904 0.2597 18 6 -5.2364 -5.7686 0.4972 19 6 -6.6705 -5.2380 0.4473 20 6 -7.6364 -6.3884 0.5687 21 8 -7.2203 -7.5169 0.6838 22 8 -8.9589 -6.1594 0.5489 23 7 -0.0329 -2.4419 0.1413 24 1 -0.4851 0.8401 -0.0004 25 1 3.0931 -3.6426 0.2510 26 1 -0.4991 -5.7217 0.4788 27 1 -2.5630 -2.7751 0.1786 28 1 -2.5183 -5.5330 -0.4298 29 1 -2.5134 -5.3486 1.3406 30 1 -5.0776 -6.4653 -0.3260 31 1 -5.0721 -6.2821 1.4446 32 1 -6.8291 -4.5416 1.2706 33 1 -6.8351 -4.7243 -0.4999 34 1 -9.5388 -6.9289 0.6302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160873858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:46 Heat of formation + Delta-G solvation = -110.973491 kcal Electronic energy + Delta-G solvation = -20317.821071 eV Core-core repulsion = 16828.705641 eV Total energy + Delta-G solvation = -3489.115430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44408 -40.92598 -40.40508 -37.16772 -36.64865 -35.72887 -34.17109 -33.53435 -31.47377 -29.15069 -27.75021 -26.28811 -24.30006 -23.02423 -22.10130 -20.63851 -19.38308 -19.17021 -18.56502 -17.60634 -17.44866 -17.20734 -16.84375 -16.67101 -16.50518 -16.06142 -15.62523 -15.25796 -14.72283 -14.45394 -14.45022 -14.04644 -13.65453 -13.26913 -13.18094 -12.95000 -12.92210 -12.54106 -12.52162 -12.25708 -12.05501 -11.75398 -11.65308 -11.39761 -11.34514 -10.81827 -10.24668 -9.31388 -8.51636 -8.31826 -6.63273 0.84924 0.86270 1.20139 1.26704 1.42321 1.55128 1.58815 1.96539 2.21448 2.45105 2.84353 3.07121 3.57554 3.91153 4.04496 4.21008 4.23814 4.39009 4.42390 4.46652 4.47946 4.64206 4.67747 4.79424 4.93297 4.96327 5.15510 5.21297 5.62718 5.71856 6.09485 6.17997 6.40148 6.63549 6.68308 6.95986 6.99718 7.47622 8.09042 8.35603 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.003191 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.537912 B = 8771.484300 C = 9732.809113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.022 3.978 3 Si 0.994 3.006 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.442 4.442 8 H 0.102 0.898 9 C 0.215 3.785 10 C -0.133 4.133 11 N -0.415 5.415 12 C -0.172 4.172 13 C 0.364 3.636 14 N -0.726 5.726 15 C 0.075 3.925 16 C 0.367 3.633 17 O -0.479 6.479 18 C -0.146 4.146 19 C -0.108 4.108 20 C 0.491 3.509 21 O -0.546 6.546 22 O -0.516 6.516 23 N -0.544 5.544 24 H 0.281 0.719 25 H 0.143 0.857 26 H 0.159 0.841 27 H 0.397 0.603 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.891 -7.623 0.966 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.202 4.202 3 Si 0.813 3.187 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.475 4.475 8 H 0.120 0.880 9 C 0.087 3.913 10 C -0.301 4.301 11 N -0.126 5.126 12 C -0.335 4.335 13 C 0.120 3.880 14 N -0.364 5.364 15 C -0.049 4.049 16 C 0.244 3.756 17 O -0.354 6.354 18 C -0.184 4.184 19 C -0.146 4.146 20 C 0.335 3.665 21 O -0.437 6.437 22 O -0.330 6.330 23 N -0.272 5.272 24 H 0.092 0.908 25 H 0.160 0.840 26 H 0.176 0.824 27 H 0.233 0.767 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -15.032 -7.116 0.926 16.657 hybrid contribution -0.202 0.389 0.011 0.438 sum -15.234 -6.728 0.937 16.680 Atomic orbital electron populations 1.70201 1.09143 1.29584 1.27644 1.27132 0.95748 1.04906 0.92389 0.85084 0.78511 0.74726 0.80346 1.17866 1.19485 1.18107 1.20042 0.95758 0.89949 1.41722 0.87959 1.19541 0.88233 0.94446 0.89094 1.23055 0.99687 0.89237 1.18145 1.67527 1.09095 1.29946 1.06048 1.22474 0.90504 0.96869 1.23661 1.19806 0.86370 0.91810 0.90056 1.44072 1.01366 1.09317 1.81634 1.21884 0.90521 0.87083 1.05426 1.24861 0.91361 0.90033 0.69336 1.90440 1.80960 1.27039 1.36985 1.21834 0.91135 0.97122 1.08271 1.21140 0.90794 0.94963 1.07657 1.23440 0.82443 0.89967 0.70674 1.90739 1.79585 1.26201 1.47212 1.84509 1.18270 1.45714 1.84483 1.69001 1.08785 1.24198 1.25218 0.90798 0.83996 0.82431 0.76662 0.86909 0.86954 0.85367 0.85382 0.86495 0.86496 0.70926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.74 11.51 21.84 0.25 -39.49 16 2 C 0.02 1.08 5.49 85.30 0.47 1.55 16 3 Si 0.99 37.08 29.56 68.60 2.03 39.11 16 4 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 5 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 6 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.44 -23.62 9.15 23.46 0.21 -23.41 16 8 H 0.10 4.97 7.86 -2.91 -0.02 4.94 16 9 C 0.21 12.11 6.54 40.16 0.26 12.37 16 10 C -0.13 -6.96 10.97 85.29 0.94 -6.02 16 11 N -0.41 -20.85 10.47 -192.23 -2.01 -22.86 16 12 C -0.17 -7.92 10.49 85.05 0.89 -7.03 16 13 C 0.36 17.69 7.66 133.36 1.02 18.71 16 14 N -0.73 -28.33 5.69 -348.37 -1.98 -30.32 16 15 C 0.08 1.89 5.31 85.63 0.45 2.35 16 16 C 0.37 7.85 7.23 29.10 0.21 8.06 16 17 O -0.48 -13.88 15.29 -1.45 -0.02 -13.90 16 18 C -0.15 -1.99 4.93 29.85 0.15 -1.84 16 19 C -0.11 -1.47 5.10 29.85 0.15 -1.32 16 20 C 0.49 7.21 8.33 71.24 0.59 7.81 16 21 O -0.55 -11.07 16.74 21.98 0.37 -10.70 16 22 O -0.52 -5.62 13.42 -51.45 -0.69 -6.31 16 23 N -0.54 -30.69 8.09 -186.01 -1.51 -32.19 16 24 H 0.28 13.62 8.29 -92.70 -0.77 12.85 16 25 H 0.14 6.80 8.06 -2.91 -0.02 6.78 16 26 H 0.16 5.83 6.70 -2.91 -0.02 5.81 16 27 H 0.40 16.85 7.57 -92.71 -0.70 16.15 16 28 H 0.11 2.43 7.93 -2.38 -0.02 2.41 16 29 H 0.11 2.42 7.93 -2.39 -0.02 2.40 16 30 H 0.13 1.42 8.10 -2.38 -0.02 1.40 16 31 H 0.13 1.42 8.10 -2.38 -0.02 1.40 16 32 H 0.12 1.55 8.10 -2.39 -0.02 1.53 16 33 H 0.12 1.55 8.10 -2.38 -0.02 1.53 16 34 H 0.43 1.10 9.10 -74.06 -0.67 0.42 16 Total: -1.00 -75.30 309.15 1.58 -73.72 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.20 Total: 31.73 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 5.35 Total: 11.23 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -5.25 Total: -124.87 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.35 Total: -30.92 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -75.30 1.58 -73.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160873858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.256 kcal (2) G-P(sol) polarization free energy of solvation -75.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds