Wall clock time and date at job start Tue Mar 31 2020 00:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34773 * 116.99658 * 2 1 4 4 O 1.21516 * 120.00398 * 359.97438 * 3 2 1 5 5 C 1.47328 * 119.99736 * 179.97438 * 3 2 1 6 6 C 1.39626 * 120.14459 * 2.52509 * 5 3 2 7 7 C 1.38101 * 120.28210 * 180.27658 * 6 5 3 8 8 C 1.38106 * 120.58655 * 359.97438 * 7 6 5 9 9 C 1.39620 * 120.28209 * 0.02562 * 8 7 6 10 10 C 1.47326 * 120.14439 * 179.97438 * 9 8 7 11 11 O 1.21524 * 120.00160 * 177.29871 * 10 9 8 12 12 O 1.34772 * 120.00019 * 357.29087 * 10 9 8 13 13 C 1.45200 * 117.00321 * 180.02562 * 12 10 9 14 14 C 1.40532 * 119.71076 * 359.97438 * 9 8 7 15 15 N 1.37944 * 120.28714 * 180.02562 * 14 9 8 16 16 C 1.36789 * 119.99577 * 84.44684 * 15 14 9 17 17 H 1.07997 * 120.00782 * 353.34572 * 16 15 14 18 18 C 1.38925 * 119.99928 * 173.34953 * 16 15 14 19 19 N 1.31466 * 120.00420 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99554 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47065 * 90.00307 * 20 18 16 22 22 H 1.48506 * 109.47049 * 209.99726 * 20 18 16 23 23 H 1.48492 * 109.47636 * 330.00210 * 20 18 16 24 24 H 1.08994 * 109.46733 * 60.00426 * 1 2 3 25 25 H 1.08999 * 109.46608 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47153 * 300.00435 * 1 2 3 27 27 H 1.07993 * 119.85954 * 0.25200 * 6 5 3 28 28 H 1.07999 * 119.70987 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.85632 * 179.97438 * 8 7 6 30 30 H 1.08997 * 109.47501 * 179.97438 * 13 12 10 31 31 H 1.09005 * 109.47049 * 299.99897 * 13 12 10 32 32 H 1.09007 * 109.47094 * 59.99662 * 13 12 10 33 33 H 0.97002 * 119.99821 * 264.44892 * 15 14 9 34 34 H 0.97001 * 120.00561 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5351 1.2780 0.0006 6 6 4.2985 0.1101 -0.0521 7 6 5.6778 0.1788 -0.0459 8 6 6.3203 1.4000 0.0117 9 6 5.5806 2.5829 0.0651 10 6 6.2691 3.8839 0.1270 11 8 5.6238 4.9137 0.1238 12 8 7.6146 3.9320 0.1873 13 6 8.2252 5.2480 0.2468 14 6 4.1764 2.5271 0.0595 15 7 3.4338 3.6885 0.1113 16 6 3.1648 4.3801 -1.0378 17 1 3.6214 4.0788 -1.9690 18 6 2.3042 5.4703 -1.0071 19 7 2.0461 6.1353 -2.1113 20 14 1.5139 5.9911 0.6034 21 1 2.3882 6.9775 1.2876 22 1 0.1915 6.6086 0.3289 23 1 1.3338 4.8017 1.4739 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.8083 -0.8511 -0.0974 28 1 6.2592 -0.7304 -0.0874 29 1 7.3996 1.4400 0.0162 30 1 9.3093 5.1439 0.2923 31 1 7.9515 5.8161 -0.6423 32 1 7.8732 5.7721 1.1355 33 1 3.1024 4.0147 0.9626 34 1 1.4455 6.8968 -2.0899 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187353.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:28 Heat of formation + Delta-G solvation = -124.923666 kcal Electronic energy + Delta-G solvation = -22165.354266 eV Core-core repulsion = 18643.341160 eV Total energy + Delta-G solvation = -3522.013106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.76040 -41.08504 -39.56793 -37.46494 -37.23285 -36.31818 -33.63815 -32.89917 -30.70165 -28.78259 -28.33480 -26.04659 -25.17009 -23.99582 -21.76584 -21.64241 -20.10247 -19.27572 -18.19632 -18.02061 -17.40171 -17.24835 -17.16466 -17.06617 -16.40207 -15.87307 -15.53430 -14.99972 -14.87772 -14.37125 -14.29486 -14.16595 -13.85964 -13.27035 -13.10848 -13.02457 -12.93552 -12.85660 -12.64293 -12.34116 -11.92819 -11.69873 -11.67414 -11.66255 -11.32729 -10.90083 -10.08278 -9.78750 -9.41733 -8.06099 -5.39599 -0.37138 -0.01143 1.27992 1.32221 1.40451 1.44284 1.64103 1.90410 1.97561 2.45998 2.84138 3.29744 3.35039 3.81217 3.92923 4.01829 4.32982 4.35325 4.35712 4.37309 4.40373 4.42811 4.58357 4.65796 4.75243 4.84086 5.24294 5.27688 5.33380 5.41479 5.56723 5.65081 5.85312 6.15715 6.93563 6.96401 7.03232 7.74188 7.84739 9.15364 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.009861 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.216862 B = 2838.646804 C = 4760.360870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.494 3.506 4 O -0.507 6.507 5 C -0.183 4.183 6 C -0.009 4.009 7 C -0.142 4.142 8 C -0.010 4.010 9 C -0.183 4.183 10 C 0.489 3.511 11 O -0.502 6.502 12 O -0.357 6.357 13 C 0.034 3.966 14 C 0.284 3.716 15 N -0.683 5.683 16 C -0.181 4.181 17 H 0.047 0.953 18 C -0.043 4.043 19 N -0.980 5.980 20 Si 0.947 3.053 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.261 1.261 24 H 0.047 0.953 25 H 0.144 0.856 26 H 0.054 0.946 27 H 0.171 0.829 28 H 0.190 0.810 29 H 0.171 0.829 30 H 0.144 0.856 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.373 0.627 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.189 -17.618 7.647 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.338 3.662 4 O -0.395 6.395 5 C -0.187 4.187 6 C -0.028 4.028 7 C -0.159 4.159 8 C -0.028 4.028 9 C -0.187 4.187 10 C 0.333 3.667 11 O -0.389 6.389 12 O -0.275 6.275 13 C -0.059 4.059 14 C 0.184 3.816 15 N -0.320 5.320 16 C -0.310 4.310 17 H 0.065 0.935 18 C -0.234 4.234 19 N -0.631 5.631 20 Si 0.776 3.224 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.186 1.186 24 H 0.066 0.934 25 H 0.162 0.838 26 H 0.073 0.927 27 H 0.189 0.811 28 H 0.207 0.793 29 H 0.188 0.812 30 H 0.161 0.839 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.210 0.790 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.709 -16.849 7.430 20.817 hybrid contribution -1.215 1.723 0.531 2.174 sum 8.494 -15.126 7.961 19.087 Atomic orbital electron populations 1.23469 0.75144 1.05641 1.01763 1.86483 1.24466 1.31501 1.84879 1.21332 0.89662 0.81650 0.73516 1.90990 1.67115 1.36842 1.44529 1.19939 0.89573 0.95377 1.13806 1.21985 0.94679 0.97034 0.89103 1.21548 0.93453 0.98850 1.02092 1.21981 1.01733 0.90007 0.89107 1.19947 0.92804 0.92120 1.13863 1.21351 0.81230 0.90127 0.73947 1.91030 1.66961 1.36734 1.44203 1.86474 1.20731 1.35462 1.84826 1.23450 0.99652 0.81190 1.01642 1.17733 0.89131 0.86741 0.87986 1.39461 1.61678 1.24497 1.06362 1.18251 1.19256 1.07566 0.85960 0.93541 1.25141 1.00402 0.98413 0.99446 1.69773 1.41940 1.23228 1.28111 0.85519 0.77555 0.77960 0.81404 1.21209 1.22059 1.18557 0.93364 0.83839 0.92713 0.81114 0.79316 0.81202 0.83851 0.93537 0.92722 0.78992 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.57 113.37 1.20 2.01 16 2 O -0.36 -10.75 9.80 -56.84 -0.56 -11.30 16 3 C 0.49 19.59 7.88 70.21 0.55 20.15 16 4 O -0.51 -25.33 14.40 19.78 0.28 -25.05 16 5 C -0.18 -6.60 5.89 -19.99 -0.12 -6.72 16 6 C -0.01 -0.22 9.60 22.57 0.22 0.00 16 7 C -0.14 -2.52 10.00 22.21 0.22 -2.30 16 8 C -0.01 -0.23 9.60 22.57 0.22 -0.01 16 9 C -0.18 -6.67 5.89 -19.99 -0.12 -6.79 16 10 C 0.49 19.76 7.88 70.21 0.55 20.31 16 11 O -0.50 -25.61 13.74 19.76 0.27 -25.34 16 12 O -0.36 -11.06 9.80 -56.83 -0.56 -11.62 16 13 C 0.03 0.86 10.57 113.37 1.20 2.06 16 14 C 0.28 12.28 5.87 39.30 0.23 12.51 16 15 N -0.68 -36.51 1.76 -183.01 -0.32 -36.83 16 16 C -0.18 -11.40 8.40 84.08 0.71 -10.69 16 17 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 18 C -0.04 -2.79 5.50 84.91 0.47 -2.33 16 19 N -0.98 -67.99 13.96 21.66 0.30 -67.69 16 20 Si 0.95 52.78 27.67 68.60 1.90 54.68 16 21 H -0.29 -15.61 7.11 99.48 0.71 -14.90 16 22 H -0.29 -16.20 7.11 99.48 0.71 -15.49 16 23 H -0.26 -13.89 6.62 99.48 0.66 -13.23 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.17 2.79 7.59 -2.91 -0.02 2.77 16 28 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 29 H 0.17 2.84 7.59 -2.91 -0.02 2.82 16 30 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.37 20.24 5.97 -92.71 -0.55 19.69 16 34 H 0.26 16.95 8.31 -92.71 -0.77 16.18 16 Total: -1.00 -90.07 304.03 7.19 -82.88 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.54 Total: 12.08 kcal Atomic # 6 Polarization: 22.87 SS G_CDS: 5.33 Total: 28.19 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -0.02 Total: -104.52 kcal Atomic # 8 Polarization: -72.76 SS G_CDS: -0.56 Total: -73.31 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 1.90 Total: 54.68 kcal Total: -90.07 7.19 -82.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187353.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.040 kcal (2) G-P(sol) polarization free energy of solvation -90.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds