Wall clock time and date at job start Tue Mar 31 2020 00:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.47011 * 2 1 4 4 C 1.34801 * 117.00065 * 180.02562 * 3 2 1 5 5 O 1.21563 * 120.00169 * 359.97438 * 4 3 2 6 6 C 1.47101 * 120.00145 * 179.97438 * 4 3 2 7 7 C 1.40047 * 120.08730 * 0.02562 * 6 4 3 8 8 C 1.36426 * 120.19852 * 179.67887 * 7 6 4 9 9 C 1.39456 * 120.39243 * 0.57943 * 8 7 6 10 10 N 1.38911 * 119.90582 * 179.70731 * 9 8 7 11 11 C 1.36752 * 119.99640 * 359.72088 * 10 9 8 12 12 H 1.08002 * 120.00450 * 0.02562 * 11 10 9 13 13 C 1.38862 * 119.99862 * 180.02562 * 11 10 9 14 14 N 1.31545 * 119.99844 * 180.27807 * 13 11 10 15 15 Si 1.86800 * 119.99767 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 90.00157 * 15 13 11 17 17 H 1.48499 * 109.47026 * 210.00005 * 15 13 11 18 18 H 1.48496 * 109.47474 * 330.00041 * 15 13 11 19 19 C 1.39414 * 120.19178 * 359.42700 * 9 8 7 20 20 C 1.38856 * 119.76315 * 0.28338 * 19 9 8 21 21 O 1.36216 * 108.78036 * 179.97438 * 20 19 9 22 22 C 1.43999 * 105.51574 * 17.25496 * 21 20 19 23 23 O 1.36562 * 131.56743 * 180.27870 * 19 9 8 24 24 H 1.09002 * 109.46892 * 299.99988 * 1 2 3 25 25 H 1.08992 * 109.47401 * 60.00007 * 1 2 3 26 26 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47549 * 239.99805 * 2 1 3 28 28 H 1.09003 * 109.47756 * 119.99645 * 2 1 3 29 29 H 1.08002 * 119.89755 * 359.97438 * 7 6 4 30 30 H 1.07998 * 119.80307 * 180.28079 * 8 7 6 31 31 H 0.97000 * 120.00521 * 179.72782 * 10 9 8 32 32 H 0.97004 * 119.99743 * 179.72657 * 14 13 11 33 33 H 1.08998 * 110.58609 * 91.51479 * 22 21 20 34 34 H 1.08997 * 110.58989 * 214.28403 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5457 -0.0005 5 8 4.0909 0.5817 -0.0005 6 6 3.9126 2.9050 -0.0011 7 6 3.0612 4.0169 -0.0006 8 6 3.5802 5.2786 0.0054 9 6 4.9610 5.4735 -0.0010 10 7 5.4785 6.7627 -0.0009 11 6 4.6341 7.8383 -0.0003 12 1 3.5649 7.6856 0.0006 13 6 5.1513 9.1270 -0.0007 14 7 4.3391 10.1617 0.0055 15 14 7.0006 9.3912 -0.0015 16 1 7.4900 9.4609 -1.4018 17 1 7.3194 10.6616 0.6982 18 1 7.6623 8.2610 0.6985 19 6 5.8237 4.3783 -0.0017 20 6 5.3033 3.0910 -0.0018 21 8 6.3346 2.2011 -0.0031 22 6 7.4922 2.9525 0.4079 23 8 7.1870 4.2988 -0.0023 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.9905 3.8751 -0.0002 30 1 2.9177 6.1315 0.0104 31 1 6.4387 6.8999 -0.0014 32 1 4.7004 11.0619 0.0092 33 1 7.6186 2.9007 1.4893 34 1 8.3856 2.5881 -0.0992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187438.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:13 Heat of formation + Delta-G solvation = -115.731563 kcal Electronic energy + Delta-G solvation = -21409.303184 eV Core-core repulsion = 17887.688677 eV Total energy + Delta-G solvation = -3521.614506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46923 -39.64862 -37.85354 -36.17820 -35.45391 -34.94717 -32.51353 -31.53860 -29.34717 -28.91934 -25.51948 -25.03822 -23.36064 -22.46185 -21.93603 -20.38753 -18.85435 -17.74633 -17.48605 -16.71155 -16.38560 -16.11404 -15.83526 -15.79028 -15.04743 -14.15061 -13.81229 -13.75849 -13.52325 -13.13911 -12.97817 -12.79616 -12.63957 -12.49207 -12.26546 -11.79162 -11.64935 -11.58491 -11.49135 -11.28362 -10.93131 -10.72653 -10.30261 -10.22549 -10.05847 -9.74627 -9.14344 -7.56003 -7.15345 -6.88832 -4.09995 1.50677 2.06665 2.83306 2.87012 2.91771 3.15574 3.23153 3.42745 3.70764 4.04330 4.33593 4.41182 4.81734 5.01721 5.06074 5.13339 5.26628 5.27401 5.37676 5.59718 5.70641 5.82461 5.82740 5.95157 6.00252 6.07574 6.49572 6.60978 6.77211 6.96681 7.00838 7.18048 7.24521 7.45136 7.85972 8.14840 8.45780 8.79033 8.80697 10.19098 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.004872 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.266302 B = 5745.667439 C = 6935.705561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.361 6.361 4 C 0.517 3.483 5 O -0.532 6.532 6 C -0.251 4.251 7 C 0.004 3.996 8 C -0.214 4.214 9 C 0.249 3.751 10 N -0.540 5.540 11 C -0.307 4.307 12 H 0.130 0.870 13 C 0.048 3.952 14 N -0.846 5.846 15 Si 0.881 3.119 16 H -0.263 1.263 17 H -0.268 1.268 18 H -0.262 1.262 19 C -0.129 4.129 20 C 0.162 3.838 21 O -0.297 6.297 22 C 0.214 3.786 23 O -0.317 6.317 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.388 0.612 32 H 0.285 0.715 33 H 0.071 0.929 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -10.593 0.958 10.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.279 6.279 4 C 0.366 3.634 5 O -0.423 6.423 6 C -0.257 4.257 7 C -0.016 4.016 8 C -0.237 4.237 9 C 0.122 3.878 10 N -0.138 5.138 11 C -0.436 4.436 12 H 0.148 0.852 13 C -0.160 4.160 14 N -0.478 5.478 15 Si 0.706 3.294 16 H -0.187 1.187 17 H -0.193 1.193 18 H -0.187 1.187 19 C -0.178 4.178 20 C 0.114 3.886 21 O -0.212 6.212 22 C 0.101 3.899 23 O -0.235 6.235 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.223 0.777 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.074 -10.333 0.854 10.424 hybrid contribution 1.579 0.146 0.093 1.588 sum 0.505 -10.187 0.948 10.243 Atomic orbital electron populations 1.21785 0.93124 1.02433 1.03463 1.22845 0.94824 0.81287 1.02066 1.86559 1.24937 1.31002 1.85397 1.20926 0.79687 0.89996 0.72750 1.90798 1.60089 1.42699 1.48756 1.17153 0.87764 0.90209 1.30613 1.20435 0.98559 0.90246 0.92399 1.20041 0.91746 0.97592 1.14273 1.16784 0.91078 0.81554 0.98372 1.41429 1.08303 1.03231 1.60879 1.19702 0.93210 0.83213 1.47490 0.85231 1.25155 0.99643 0.95042 0.96209 1.69656 1.35698 0.99219 1.43231 0.86566 0.83419 0.79514 0.79889 1.18746 1.19292 1.18713 1.18482 0.81813 0.93174 1.24320 1.19067 0.88344 0.85865 0.95292 1.87376 1.16444 1.33665 1.83691 1.25408 0.89957 0.75299 0.99236 1.87217 1.18671 1.30902 1.86665 0.91558 0.91543 0.90759 0.91791 0.91805 0.84890 0.84167 0.77700 0.90467 0.91160 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.83 6.20 37.16 0.23 1.06 16 3 O -0.36 -5.95 9.45 -40.77 -0.39 -6.33 16 4 C 0.52 10.10 7.88 34.33 0.27 10.37 16 5 O -0.53 -11.55 15.76 -24.49 -0.39 -11.94 16 6 C -0.25 -5.01 5.89 -104.85 -0.62 -5.63 16 7 C 0.00 0.07 9.55 -39.56 -0.38 -0.30 16 8 C -0.21 -4.18 9.22 -39.78 -0.37 -4.55 16 9 C 0.25 5.31 6.63 -83.76 -0.56 4.75 16 10 N -0.54 -11.92 5.22 -9.53 -0.05 -11.97 16 11 C -0.31 -7.30 10.03 -15.13 -0.15 -7.45 16 12 H 0.13 3.17 5.88 -52.49 -0.31 2.86 16 13 C 0.05 1.16 5.50 -17.44 -0.10 1.06 16 14 N -0.85 -21.29 13.96 55.49 0.77 -20.52 16 15 Si 0.88 17.83 27.73 -169.99 -4.71 13.11 16 16 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.26 -5.15 6.52 56.52 0.37 -4.78 16 19 C -0.13 -2.71 6.99 -38.92 -0.27 -2.98 16 20 C 0.16 3.39 6.79 -38.58 -0.26 3.12 16 21 O -0.30 -5.93 10.57 -50.08 -0.53 -6.46 16 22 C 0.21 3.41 8.90 101.05 0.90 4.31 16 23 O -0.32 -6.17 11.39 -45.90 -0.52 -6.69 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.13 2.05 7.59 -52.49 -0.40 1.65 16 30 H 0.14 2.68 5.92 -52.49 -0.31 2.37 16 31 H 0.39 8.30 5.73 -40.82 -0.23 8.07 16 32 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 299.10 15.07 4.51 4.51 Total: -1.00 -28.51 299.10 -5.60 -34.11 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -3.38 Total: 9.46 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.92 Total: 2.73 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.73 Total: -32.49 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.82 Total: -31.43 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -4.71 Total: 13.11 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.51 -5.60 -34.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187438.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.624 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds