Wall clock time and date at job start Tue Mar 31 2020 00:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.47011 * 2 1 4 4 C 1.34801 * 117.00065 * 180.02562 * 3 2 1 5 5 O 1.21563 * 120.00169 * 359.97438 * 4 3 2 6 6 C 1.47101 * 120.00145 * 179.97438 * 4 3 2 7 7 C 1.40047 * 120.08730 * 0.02562 * 6 4 3 8 8 C 1.36426 * 120.19852 * 179.67887 * 7 6 4 9 9 C 1.39456 * 120.39243 * 0.57943 * 8 7 6 10 10 N 1.38911 * 119.90582 * 179.70731 * 9 8 7 11 11 C 1.36752 * 119.99640 * 359.72088 * 10 9 8 12 12 H 1.08002 * 120.00450 * 0.02562 * 11 10 9 13 13 C 1.38862 * 119.99862 * 180.02562 * 11 10 9 14 14 N 1.31545 * 119.99844 * 180.27807 * 13 11 10 15 15 Si 1.86800 * 119.99767 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 90.00157 * 15 13 11 17 17 H 1.48499 * 109.47026 * 210.00005 * 15 13 11 18 18 H 1.48496 * 109.47474 * 330.00041 * 15 13 11 19 19 C 1.39414 * 120.19178 * 359.42700 * 9 8 7 20 20 C 1.38856 * 119.76315 * 0.28338 * 19 9 8 21 21 O 1.36216 * 108.78036 * 179.97438 * 20 19 9 22 22 C 1.43999 * 105.51574 * 17.25496 * 21 20 19 23 23 O 1.36562 * 131.56743 * 180.27870 * 19 9 8 24 24 H 1.09002 * 109.46892 * 299.99988 * 1 2 3 25 25 H 1.08992 * 109.47401 * 60.00007 * 1 2 3 26 26 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47549 * 239.99805 * 2 1 3 28 28 H 1.09003 * 109.47756 * 119.99645 * 2 1 3 29 29 H 1.08002 * 119.89755 * 359.97438 * 7 6 4 30 30 H 1.07998 * 119.80307 * 180.28079 * 8 7 6 31 31 H 0.97000 * 120.00521 * 179.72782 * 10 9 8 32 32 H 0.97004 * 119.99743 * 179.72657 * 14 13 11 33 33 H 1.08998 * 110.58609 * 91.51479 * 22 21 20 34 34 H 1.08997 * 110.58989 * 214.28403 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5457 -0.0005 5 8 4.0909 0.5817 -0.0005 6 6 3.9126 2.9050 -0.0011 7 6 3.0612 4.0169 -0.0006 8 6 3.5802 5.2786 0.0054 9 6 4.9610 5.4735 -0.0010 10 7 5.4785 6.7627 -0.0009 11 6 4.6341 7.8383 -0.0003 12 1 3.5649 7.6856 0.0006 13 6 5.1513 9.1270 -0.0007 14 7 4.3391 10.1617 0.0055 15 14 7.0006 9.3912 -0.0015 16 1 7.4900 9.4609 -1.4018 17 1 7.3194 10.6616 0.6982 18 1 7.6623 8.2610 0.6985 19 6 5.8237 4.3783 -0.0017 20 6 5.3033 3.0910 -0.0018 21 8 6.3346 2.2011 -0.0031 22 6 7.4922 2.9525 0.4079 23 8 7.1870 4.2988 -0.0023 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.9905 3.8751 -0.0002 30 1 2.9177 6.1315 0.0104 31 1 6.4387 6.8999 -0.0014 32 1 4.7004 11.0619 0.0092 33 1 7.6186 2.9007 1.4893 34 1 8.3856 2.5881 -0.0992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187438.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:12 Heat of formation + Delta-G solvation = -132.883829 kcal Electronic energy + Delta-G solvation = -21410.046962 eV Core-core repulsion = 17887.688677 eV Total energy + Delta-G solvation = -3522.358284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.99287 -41.11428 -39.46170 -37.62659 -36.98738 -36.55812 -34.20917 -32.55735 -30.89128 -30.51069 -27.06503 -26.50297 -24.65659 -24.02162 -23.28195 -21.89238 -20.51910 -19.25561 -19.04524 -18.17831 -17.87858 -17.43446 -17.39497 -17.23273 -16.62148 -15.67818 -15.32946 -15.10442 -14.97034 -14.58232 -14.52308 -14.34859 -14.04395 -13.76235 -13.52164 -13.21308 -13.16334 -13.00739 -12.79869 -12.43576 -12.40964 -12.26410 -11.99249 -11.58486 -11.41309 -11.32515 -10.85776 -9.11865 -8.81432 -8.61918 -5.91424 -0.08740 0.46592 1.25266 1.27708 1.32455 1.65963 1.81576 1.95586 2.07179 2.63942 2.70222 2.78884 3.10102 3.84211 3.92532 4.03566 4.08048 4.08864 4.19522 4.26514 4.42160 4.44586 4.57388 4.80792 4.91684 5.00529 5.07200 5.19351 5.27020 5.36259 5.52775 5.59997 5.66352 5.76862 6.24873 6.44565 6.94422 7.07944 7.11741 8.49900 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.004872 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.266302 B = 5745.667439 C = 6935.705561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.521 3.479 5 O -0.555 6.555 6 C -0.253 4.253 7 C 0.021 3.979 8 C -0.220 4.220 9 C 0.248 3.752 10 N -0.558 5.558 11 C -0.317 4.317 12 H 0.111 0.889 13 C 0.005 3.995 14 N -0.896 5.896 15 Si 0.937 3.063 16 H -0.261 1.261 17 H -0.266 1.266 18 H -0.254 1.254 19 C -0.132 4.132 20 C 0.149 3.851 21 O -0.313 6.313 22 C 0.205 3.795 23 O -0.329 6.329 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.165 0.835 30 H 0.142 0.858 31 H 0.389 0.611 32 H 0.286 0.714 33 H 0.094 0.906 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 -12.830 1.119 12.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.371 3.629 5 O -0.448 6.448 6 C -0.259 4.259 7 C 0.001 3.999 8 C -0.243 4.243 9 C 0.124 3.876 10 N -0.161 5.161 11 C -0.446 4.446 12 H 0.129 0.871 13 C -0.199 4.199 14 N -0.532 5.532 15 Si 0.760 3.240 16 H -0.186 1.186 17 H -0.190 1.190 18 H -0.178 1.178 19 C -0.181 4.181 20 C 0.102 3.898 21 O -0.228 6.228 22 C 0.094 3.906 23 O -0.247 6.247 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.183 0.817 30 H 0.160 0.840 31 H 0.224 0.776 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.047 -12.623 1.020 12.708 hybrid contribution 1.459 0.352 0.051 1.502 sum 0.412 -12.271 1.071 12.325 Atomic orbital electron populations 1.21813 0.90043 1.04360 1.03805 1.23261 0.97179 0.79350 1.02202 1.86546 1.22902 1.33440 1.84562 1.20842 0.80639 0.89367 0.72090 1.90787 1.61008 1.43347 1.49698 1.17568 0.87979 0.91263 1.29044 1.20714 0.99956 0.88957 0.90276 1.20209 0.91346 0.98387 1.14345 1.17193 0.91946 0.81697 0.96734 1.41228 1.08006 1.02871 1.63959 1.19548 0.92709 0.84038 1.48319 0.87133 1.25753 1.03342 0.94659 0.96159 1.69743 1.37309 0.99605 1.46512 0.85707 0.78933 0.79535 0.79852 1.18586 1.19018 1.17818 1.18606 0.82722 0.93041 1.23775 1.19349 0.89085 0.86131 0.95277 1.87352 1.17181 1.34385 1.83864 1.26005 0.89853 0.73448 1.01314 1.87200 1.17668 1.32841 1.86958 0.91176 0.91225 0.88038 0.91775 0.91678 0.81737 0.84002 0.77553 0.90417 0.88859 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.29 71.98 0.74 -1.46 16 2 C 0.05 1.25 6.20 71.98 0.45 1.70 16 3 O -0.36 -10.86 9.45 -57.13 -0.54 -11.40 16 4 C 0.52 19.30 7.88 70.15 0.55 19.86 16 5 O -0.55 -23.19 15.76 24.58 0.39 -22.81 16 6 C -0.25 -9.62 5.89 -20.01 -0.12 -9.74 16 7 C 0.02 0.72 9.55 22.29 0.21 0.93 16 8 C -0.22 -8.45 9.22 22.14 0.20 -8.24 16 9 C 0.25 10.47 6.63 38.60 0.26 10.73 16 10 N -0.56 -24.82 5.22 -184.06 -0.96 -25.78 16 11 C -0.32 -15.50 10.03 84.08 0.84 -14.65 16 12 H 0.11 5.65 5.88 -2.91 -0.02 5.63 16 13 C 0.00 0.23 5.50 84.89 0.47 0.70 16 14 N -0.90 -46.84 13.96 21.66 0.30 -46.54 16 15 Si 0.94 37.19 27.73 68.60 1.90 39.09 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 17 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 18 H -0.25 -9.54 6.52 99.48 0.65 -8.90 16 19 C -0.13 -5.41 6.99 22.70 0.16 -5.25 16 20 C 0.15 6.01 6.79 22.92 0.16 6.17 16 21 O -0.31 -11.88 10.57 -67.66 -0.72 -12.59 16 22 C 0.20 5.99 8.90 113.37 1.01 7.00 16 23 O -0.33 -12.23 11.39 -76.77 -0.87 -13.11 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.17 4.56 7.59 -2.91 -0.02 4.54 16 30 H 0.14 5.45 5.92 -2.91 -0.02 5.44 16 31 H 0.39 16.61 5.73 -92.71 -0.53 16.08 16 32 H 0.29 13.84 8.31 -92.71 -0.77 13.07 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.16 3.29 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -61.94 299.10 5.00 -56.94 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.57 Total: 28.45 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.93 Total: 7.74 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -0.66 Total: -72.32 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -1.74 Total: -59.90 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 1.90 Total: 39.09 kcal Total: -61.94 5.00 -56.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187438.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.941 kcal (2) G-P(sol) polarization free energy of solvation -61.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds