Wall clock time and date at job start Tue Mar 31 2020 00:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47133 * 2 1 4 4 C 1.46901 * 110.99747 * 294.61363 * 3 2 1 5 5 C 1.50699 * 109.47079 * 288.73165 * 4 3 2 6 6 H 1.07998 * 120.00206 * 356.24278 * 5 4 3 7 7 C 1.37879 * 119.99563 * 176.23762 * 5 4 3 8 8 N 1.31516 * 119.99899 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00284 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47398 * 89.99924 * 9 7 5 11 11 H 1.48511 * 109.47105 * 210.00089 * 9 7 5 12 12 H 1.48498 * 109.47137 * 329.99515 * 9 7 5 13 13 C 1.38794 * 110.99776 * 58.56652 * 3 2 1 14 14 N 1.32309 * 119.99831 * 236.06671 * 13 3 2 15 15 C 1.32486 * 122.09655 * 179.97438 * 14 13 3 16 16 Cl 1.73607 * 119.22386 * 180.27961 * 15 14 13 17 17 C 1.37683 * 121.55747 * 359.97438 * 15 14 13 18 18 C 1.39583 * 119.02510 * 0.02562 * 17 15 14 19 19 N 1.37042 * 134.51809 * 180.02562 * 18 17 15 20 20 H 0.97001 * 125.06614 * 359.96014 * 19 18 17 21 21 C 1.37094 * 109.88501 * 179.97438 * 19 18 17 22 22 C 1.34278 * 109.85332 * 359.97438 * 21 19 18 23 23 C 1.40092 * 119.99605 * 56.04744 * 13 3 2 24 24 H 1.08999 * 109.46990 * 64.70917 * 1 2 3 25 25 H 1.09003 * 109.46983 * 184.70990 * 1 2 3 26 26 H 1.09000 * 109.47143 * 304.70676 * 1 2 3 27 27 H 1.09007 * 109.46824 * 240.00032 * 2 1 3 28 28 H 1.09001 * 109.47204 * 120.00466 * 2 1 3 29 29 H 1.08994 * 109.47649 * 48.73725 * 4 3 2 30 30 H 1.09009 * 109.46872 * 168.73618 * 4 3 2 31 31 H 0.96998 * 120.00066 * 179.97438 * 8 7 5 32 32 H 1.07999 * 120.49060 * 179.97438 * 17 15 14 33 33 H 1.07996 * 125.07593 * 179.97438 * 21 19 18 34 34 H 1.07995 * 126.52818 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6566 2.0717 -1.2468 5 6 2.4796 1.5198 -2.3823 6 1 3.2425 0.7807 -2.1868 7 6 2.2585 1.9584 -3.6706 8 7 2.9764 1.4765 -4.6616 9 14 0.9394 3.2371 -4.0085 10 1 1.5309 4.5958 -3.9124 11 1 0.3892 3.0322 -5.3726 12 1 -0.1506 3.0999 -3.0094 13 6 1.5484 2.0791 1.1056 14 7 0.8707 3.2035 0.9412 15 6 0.4015 3.8990 1.9666 16 17 -0.4845 5.3612 1.6646 17 6 0.5946 3.4864 3.2658 18 6 1.3024 2.3071 3.5038 19 7 1.6710 1.6183 4.6297 20 1 1.4668 1.8868 5.5392 21 6 2.3718 0.4933 4.2795 22 6 2.4767 0.4189 2.9429 23 6 1.7899 1.5889 2.3956 24 1 -0.3633 0.4390 -0.9292 25 1 -0.3633 -1.0242 0.0844 26 1 -0.3633 0.5851 0.8448 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5985 1.9128 -1.4544 30 1 1.8503 3.1394 -1.1432 31 1 2.8206 1.7847 -5.5680 32 1 0.2048 4.0670 4.0889 33 1 2.7788 -0.2259 4.9748 34 1 2.9744 -0.3562 2.3793 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592450.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:14 Heat of formation + Delta-G solvation = 81.235835 kcal Electronic energy + Delta-G solvation = -19627.799917 eV Core-core repulsion = 16587.728474 eV Total energy + Delta-G solvation = -3040.071443 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51769 -38.74333 -37.05090 -35.82039 -32.61342 -31.43703 -30.78927 -29.74915 -28.65591 -26.84648 -23.57402 -23.05019 -21.87947 -20.76654 -20.13954 -18.16677 -16.81983 -16.48996 -15.78812 -15.44253 -15.07406 -14.78878 -14.09724 -14.01266 -13.52089 -13.45343 -13.12762 -12.92869 -12.65736 -12.23926 -11.68315 -11.65874 -11.26392 -11.16841 -11.03532 -10.69103 -10.45285 -10.28368 -9.96344 -9.73836 -9.40160 -9.14388 -8.70779 -8.52735 -8.32915 -7.16947 -6.02844 -4.00833 1.05744 1.69008 2.00523 2.67017 3.08469 3.37407 3.43755 3.51949 3.91702 4.30990 4.48639 4.80483 5.00578 5.05638 5.24303 5.30512 5.36025 5.52676 5.59332 5.70304 5.80507 5.91838 6.01102 6.11735 6.36643 6.49178 6.62536 6.64139 6.82783 6.99315 7.09811 7.40459 7.52516 7.62114 7.93397 8.36965 8.61908 9.03011 9.58663 11.09657 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.006987 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.399303 B = 4006.642387 C = 5275.671754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.062 3.938 3 N -0.455 5.455 4 C 0.163 3.837 5 C -0.516 4.516 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.869 3.131 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.415 3.585 14 N -0.541 5.541 15 C 0.220 3.780 16 Cl -0.045 7.045 17 C -0.218 4.218 18 C 0.153 3.847 19 N -0.586 5.586 20 H 0.416 0.584 21 C 0.024 3.976 22 C -0.157 4.157 23 C -0.182 4.182 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.015 0.985 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.133 0.867 33 H 0.173 0.827 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 -0.912 19.969 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.064 4.064 3 N -0.168 5.168 4 C 0.038 3.962 5 C -0.555 4.555 6 H 0.099 0.901 7 C -0.128 4.128 8 N -0.538 5.538 9 Si 0.696 3.304 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.186 1.186 13 C 0.175 3.825 14 N -0.260 5.260 15 C 0.060 3.940 16 Cl -0.017 7.017 17 C -0.245 4.245 18 C 0.038 3.962 19 N -0.189 5.189 20 H 0.252 0.748 21 C -0.100 4.100 22 C -0.182 4.182 23 C -0.192 4.192 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.190 0.810 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.896 -0.517 18.971 19.600 hybrid contribution -1.303 0.896 0.825 1.783 sum -6.198 0.379 19.796 20.747 Atomic orbital electron populations 1.22408 0.97712 1.01641 1.02324 1.22277 0.93030 0.87173 1.03871 1.59006 1.51414 1.03494 1.02876 1.20306 0.95899 0.95363 0.84590 1.21021 1.19568 1.25189 0.89697 0.90128 1.24804 0.95926 0.96132 0.95988 1.69890 1.40351 1.43683 0.99890 0.86924 0.83154 0.82636 0.77639 1.20009 1.21325 1.18584 1.19406 0.84934 0.88275 0.89846 1.67157 1.15137 1.10046 1.33641 1.20699 0.95076 0.89646 0.88568 1.98372 1.73212 1.33254 1.96828 1.20081 1.09903 0.98369 0.96196 1.17794 0.98042 0.93725 0.86677 1.41591 1.48892 1.21338 1.07129 0.74767 1.21849 1.00581 0.91085 0.96508 1.21712 1.04876 0.98948 0.92692 1.19516 1.08064 0.99677 0.91921 0.91443 0.92206 0.93644 0.88004 0.90721 0.96711 0.93826 0.92646 0.84947 0.81029 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 9.35 37.16 0.35 -2.79 16 2 C 0.06 1.13 5.66 -3.82 -0.02 1.11 16 3 N -0.45 -9.80 4.70 -174.33 -0.82 -10.62 16 4 C 0.16 4.09 3.06 -4.98 -0.02 4.08 16 5 C -0.52 -14.67 9.00 -34.44 -0.31 -14.98 16 6 H 0.08 2.45 7.86 -52.49 -0.41 2.04 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 9 Si 0.87 22.23 27.54 -169.99 -4.68 17.55 16 10 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.26 -6.57 6.43 56.52 0.36 -6.20 16 13 C 0.42 8.25 4.87 -154.94 -0.75 7.50 16 14 N -0.54 -11.15 8.47 -9.41 -0.08 -11.23 16 15 C 0.22 3.82 7.25 -17.47 -0.13 3.69 16 16 Cl -0.05 -0.70 29.08 -51.86 -1.51 -2.21 16 17 C -0.22 -3.14 9.87 -39.28 -0.39 -3.53 16 18 C 0.15 2.17 7.34 -84.08 -0.62 1.55 16 19 N -0.59 -5.84 6.05 -10.59 -0.06 -5.90 16 20 H 0.42 2.62 8.96 -40.82 -0.37 2.25 16 21 C 0.02 0.23 11.83 -16.60 -0.20 0.04 16 22 C -0.16 -2.04 9.75 -37.74 -0.37 -2.41 16 23 C -0.18 -3.01 5.84 -105.01 -0.61 -3.62 16 24 H 0.07 1.30 6.54 -51.93 -0.34 0.96 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.79 6.99 -51.93 -0.36 0.43 16 27 H 0.10 2.00 7.20 -51.92 -0.37 1.63 16 28 H 0.07 1.14 5.13 -51.93 -0.27 0.88 16 29 H 0.02 0.39 4.90 -51.93 -0.25 0.13 16 30 H 0.04 1.17 6.90 -51.92 -0.36 0.81 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.15 1.84 6.84 -52.49 -0.36 1.48 16 LS Contribution 293.62 15.07 4.42 4.42 Total: -1.00 -33.16 293.62 -8.65 -41.81 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -3.53 Total: 0.28 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -3.16 Total: -7.31 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.19 Total: -54.55 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.68 Total: 17.55 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.51 Total: -2.21 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.16 -8.65 -41.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592450.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.048 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds