Wall clock time and date at job start Tue Mar 31 2020 00:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47133 * 2 1 4 4 C 1.46901 * 110.99747 * 294.61363 * 3 2 1 5 5 C 1.50699 * 109.47079 * 288.73165 * 4 3 2 6 6 H 1.07998 * 120.00206 * 356.24278 * 5 4 3 7 7 C 1.37879 * 119.99563 * 176.23762 * 5 4 3 8 8 N 1.31516 * 119.99899 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00284 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47398 * 89.99924 * 9 7 5 11 11 H 1.48511 * 109.47105 * 210.00089 * 9 7 5 12 12 H 1.48498 * 109.47137 * 329.99515 * 9 7 5 13 13 C 1.38794 * 110.99776 * 58.56652 * 3 2 1 14 14 N 1.32309 * 119.99831 * 236.06671 * 13 3 2 15 15 C 1.32486 * 122.09655 * 179.97438 * 14 13 3 16 16 Cl 1.73607 * 119.22386 * 180.27961 * 15 14 13 17 17 C 1.37683 * 121.55747 * 359.97438 * 15 14 13 18 18 C 1.39583 * 119.02510 * 0.02562 * 17 15 14 19 19 N 1.37042 * 134.51809 * 180.02562 * 18 17 15 20 20 H 0.97001 * 125.06614 * 359.96014 * 19 18 17 21 21 C 1.37094 * 109.88501 * 179.97438 * 19 18 17 22 22 C 1.34278 * 109.85332 * 359.97438 * 21 19 18 23 23 C 1.40092 * 119.99605 * 56.04744 * 13 3 2 24 24 H 1.08999 * 109.46990 * 64.70917 * 1 2 3 25 25 H 1.09003 * 109.46983 * 184.70990 * 1 2 3 26 26 H 1.09000 * 109.47143 * 304.70676 * 1 2 3 27 27 H 1.09007 * 109.46824 * 240.00032 * 2 1 3 28 28 H 1.09001 * 109.47204 * 120.00466 * 2 1 3 29 29 H 1.08994 * 109.47649 * 48.73725 * 4 3 2 30 30 H 1.09009 * 109.46872 * 168.73618 * 4 3 2 31 31 H 0.96998 * 120.00066 * 179.97438 * 8 7 5 32 32 H 1.07999 * 120.49060 * 179.97438 * 17 15 14 33 33 H 1.07996 * 125.07593 * 179.97438 * 21 19 18 34 34 H 1.07995 * 126.52818 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6566 2.0717 -1.2468 5 6 2.4796 1.5198 -2.3823 6 1 3.2425 0.7807 -2.1868 7 6 2.2585 1.9584 -3.6706 8 7 2.9764 1.4765 -4.6616 9 14 0.9394 3.2371 -4.0085 10 1 1.5309 4.5958 -3.9124 11 1 0.3892 3.0322 -5.3726 12 1 -0.1506 3.0999 -3.0094 13 6 1.5484 2.0791 1.1056 14 7 0.8707 3.2035 0.9412 15 6 0.4015 3.8990 1.9666 16 17 -0.4845 5.3612 1.6646 17 6 0.5946 3.4864 3.2658 18 6 1.3024 2.3071 3.5038 19 7 1.6710 1.6183 4.6297 20 1 1.4668 1.8868 5.5392 21 6 2.3718 0.4933 4.2795 22 6 2.4767 0.4189 2.9429 23 6 1.7899 1.5889 2.3956 24 1 -0.3633 0.4390 -0.9292 25 1 -0.3633 -1.0242 0.0844 26 1 -0.3633 0.5851 0.8448 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5985 1.9128 -1.4544 30 1 1.8503 3.1394 -1.1432 31 1 2.8206 1.7847 -5.5680 32 1 0.2048 4.0670 4.0889 33 1 2.7788 -0.2259 4.9748 34 1 2.9744 -0.3562 2.3793 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592450.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:13 Heat of formation + Delta-G solvation = 57.928328 kcal Electronic energy + Delta-G solvation = -19628.810606 eV Core-core repulsion = 16587.728474 eV Total energy + Delta-G solvation = -3041.082133 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.62332 -40.03940 -38.36564 -37.09401 -34.78030 -32.63396 -32.07130 -31.14619 -30.13648 -28.41497 -25.02924 -24.58108 -23.17275 -21.96290 -21.48732 -19.34306 -18.83889 -17.89987 -17.01201 -16.91189 -16.39117 -16.17119 -15.81472 -15.40700 -14.92487 -14.66148 -14.45012 -14.29048 -14.03362 -13.85430 -13.40561 -12.99706 -12.76314 -12.59254 -12.51069 -12.34389 -12.23267 -11.92813 -11.75479 -11.54805 -10.92801 -10.79544 -10.54312 -9.85350 -9.66052 -8.41924 -8.30952 -6.32612 -0.11673 0.47886 0.81415 1.31371 1.33157 1.46212 1.75528 2.20043 2.32351 2.62103 2.94576 3.03298 3.74716 3.88876 3.95344 4.15394 4.22726 4.26575 4.35578 4.46335 4.58115 4.68844 4.77337 4.88361 5.00104 5.03724 5.15102 5.25500 5.34356 5.51557 5.61985 5.81958 5.87331 6.16460 6.56880 6.68338 6.70699 7.04193 7.31191 8.84901 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.006987 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.399303 B = 4006.642387 C = 5275.671754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.062 3.938 3 N -0.473 5.473 4 C 0.186 3.814 5 C -0.516 4.516 6 H 0.048 0.952 7 C 0.022 3.978 8 N -0.939 5.939 9 Si 0.931 3.069 10 H -0.272 1.272 11 H -0.275 1.275 12 H -0.259 1.259 13 C 0.382 3.618 14 N -0.580 5.580 15 C 0.183 3.817 16 Cl -0.042 7.042 17 C -0.188 4.188 18 C 0.142 3.858 19 N -0.563 5.563 20 H 0.438 0.562 21 C 0.073 3.927 22 C -0.200 4.200 23 C -0.192 4.192 24 H 0.037 0.963 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.006 0.994 30 H 0.022 0.978 31 H 0.268 0.732 32 H 0.168 0.832 33 H 0.227 0.773 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -1.270 23.847 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.063 4.063 3 N -0.187 5.187 4 C 0.060 3.940 5 C -0.555 4.555 6 H 0.066 0.934 7 C -0.176 4.176 8 N -0.580 5.580 9 Si 0.756 3.244 10 H -0.197 1.197 11 H -0.200 1.200 12 H -0.183 1.183 13 C 0.143 3.857 14 N -0.300 5.300 15 C 0.024 3.976 16 Cl -0.013 7.013 17 C -0.214 4.214 18 C 0.024 3.976 19 N -0.168 5.168 20 H 0.280 0.720 21 C -0.052 4.052 22 C -0.225 4.225 23 C -0.202 4.202 24 H 0.056 0.944 25 H 0.109 0.891 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.023 0.977 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.185 0.815 33 H 0.243 0.757 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.671 -0.853 22.918 23.625 hybrid contribution -1.008 0.930 -0.126 1.377 sum -6.679 0.076 22.792 23.750 Atomic orbital electron populations 1.22274 0.96949 1.03150 1.00490 1.22329 0.93686 0.86117 1.04123 1.59000 1.53340 1.04447 1.01961 1.19771 0.94382 0.94189 0.85643 1.21221 1.18936 1.24161 0.91138 0.93359 1.25565 0.98053 0.98120 0.95858 1.70004 1.42182 1.45356 1.00453 0.85948 0.80604 0.79989 0.77905 1.19730 1.19970 1.18300 1.19393 0.87129 0.88822 0.90323 1.66923 1.16186 1.10874 1.35984 1.20927 0.96947 0.90480 0.89215 1.98357 1.73117 1.32909 1.96938 1.20392 1.07244 0.97876 0.95869 1.17832 0.98343 0.93815 0.87577 1.41662 1.47389 1.20542 1.07233 0.72032 1.22628 0.96502 0.90083 0.95999 1.21893 1.07190 0.99033 0.94337 1.19781 1.08110 1.01207 0.91130 0.94418 0.89100 0.93931 0.90502 0.87493 0.97672 0.95957 0.92297 0.81486 0.75679 0.82539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.91 9.35 71.98 0.67 -5.24 16 2 C 0.06 2.34 5.66 86.30 0.49 2.83 16 3 N -0.47 -21.17 4.70 -705.47 -3.32 -24.49 16 4 C 0.19 9.81 3.06 85.56 0.26 10.07 16 5 C -0.52 -30.86 9.00 25.60 0.23 -30.63 16 6 H 0.05 3.12 7.86 -2.91 -0.02 3.10 16 7 C 0.02 1.35 5.47 84.65 0.46 1.82 16 8 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 9 Si 0.93 47.38 27.54 68.60 1.89 49.27 16 10 H -0.27 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.26 -12.95 6.43 99.48 0.64 -12.31 16 13 C 0.38 15.38 4.87 133.40 0.65 16.03 16 14 N -0.58 -24.37 8.47 -183.70 -1.56 -25.93 16 15 C 0.18 6.24 7.25 84.46 0.61 6.85 16 16 Cl -0.04 -1.27 29.08 -2.72 -0.08 -1.35 16 17 C -0.19 -4.90 9.87 22.46 0.22 -4.68 16 18 C 0.14 3.54 7.34 39.27 0.29 3.83 16 19 N -0.56 -8.16 6.05 -187.42 -1.13 -9.29 16 20 H 0.44 2.73 8.96 -92.71 -0.83 1.90 16 21 C 0.07 0.99 11.83 82.97 0.98 1.98 16 22 C -0.20 -4.58 9.75 23.46 0.23 -4.35 16 23 C -0.19 -6.03 5.84 -20.11 -0.12 -6.15 16 24 H 0.04 1.50 6.54 -2.39 -0.02 1.49 16 25 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.04 1.48 6.99 -2.39 -0.02 1.47 16 27 H 0.08 3.20 7.20 -2.38 -0.02 3.18 16 28 H 0.11 3.24 5.13 -2.39 -0.01 3.22 16 29 H 0.01 0.30 4.90 -2.39 -0.01 0.28 16 30 H 0.02 1.26 6.90 -2.38 -0.02 1.24 16 31 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.23 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.16 3.40 6.84 -2.91 -0.02 3.38 16 Total: -1.00 -77.31 293.62 1.34 -75.97 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 0.25 Total: 2.71 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.98 Total: -7.65 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -5.71 Total: -118.94 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.89 Total: 49.27 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -77.31 1.34 -75.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592450.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.899 kcal (2) G-P(sol) polarization free energy of solvation -77.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds