Wall clock time and date at job start Tue Mar 31 2020 01:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86800 * 119.99686 * 2 1 4 4 H 1.48495 * 109.47429 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46993 * 120.00238 * 3 2 1 6 6 H 1.48501 * 109.47457 * 240.00251 * 3 2 1 7 7 C 1.39891 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99554 * 150.28844 * 7 2 1 9 9 C 1.40981 * 119.99799 * 330.28782 * 7 2 1 10 10 C 1.40748 * 120.31434 * 329.98581 * 9 7 2 11 11 C 1.36413 * 119.95310 * 179.97438 * 10 9 7 12 12 C 1.38950 * 120.61914 * 0.02562 * 11 10 9 13 13 C 1.38078 * 120.64051 * 359.97438 * 12 11 10 14 14 C 1.38863 * 120.01932 * 359.73962 * 13 12 11 15 15 N 1.38535 * 120.30506 * 180.27504 * 14 13 12 16 16 C 1.40496 * 119.99985 * 7.51765 * 15 14 13 17 17 C 1.40316 * 126.09428 * 34.14547 * 16 15 14 18 18 N 1.30813 * 108.34304 * 179.97438 * 17 16 15 19 19 N 1.40070 * 108.39500 * 359.97438 * 18 17 16 20 20 C 1.46495 * 126.04721 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47005 * 29.97736 * 20 19 18 22 22 F 1.39899 * 109.47446 * 149.97721 * 20 19 18 23 23 C 1.35851 * 126.09090 * 213.83384 * 16 15 14 24 24 H 0.97002 * 119.99865 * 168.61280 * 1 2 3 25 25 H 1.07997 * 120.01972 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.69063 * 180.02562 * 11 10 9 27 27 H 1.08005 * 119.68003 * 179.97438 * 12 11 10 28 28 H 1.07997 * 119.98688 * 179.97438 * 13 12 11 29 29 H 0.96997 * 119.99970 * 187.51309 * 15 14 13 30 30 H 1.08005 * 125.82517 * 0.02562 * 17 16 15 31 31 H 1.08997 * 109.47488 * 269.98212 * 20 19 18 32 32 H 1.08000 * 126.23570 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 1.2779 2.7465 0.0006 5 1 3.0967 1.6964 1.2125 6 1 3.0966 1.6966 -1.2125 7 6 2.0085 -1.2115 -0.0005 8 1 2.9820 -1.2726 -0.4642 9 6 1.4426 -2.3524 0.6041 10 6 0.5670 -2.2164 1.6977 11 6 0.0233 -3.3254 2.2768 12 6 0.3254 -4.5942 1.7978 13 6 1.1811 -4.7567 0.7265 14 6 1.7450 -3.6457 0.1131 15 7 2.5999 -3.8016 -0.9658 16 6 2.7771 -5.0696 -1.5443 17 6 1.7985 -6.0682 -1.6627 18 7 2.3363 -7.1036 -2.2542 19 7 3.6757 -6.8055 -2.5357 20 6 4.6366 -7.6940 -3.1938 21 9 3.9595 -8.5393 -4.0794 22 9 5.5704 -6.9292 -3.9012 23 6 3.9248 -5.5452 -2.0940 24 1 -0.4850 -0.8235 -0.1659 25 1 0.3260 -1.2348 2.0780 26 1 -0.6484 -3.2161 3.1155 27 1 -0.1134 -5.4619 2.2681 28 1 1.4090 -5.7478 0.3631 29 1 3.0761 -3.0352 -1.3219 30 1 0.7756 -5.9942 -1.3241 31 1 5.1517 -8.2926 -2.4425 32 1 4.8646 -5.0178 -2.1657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201742566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:56 Heat of formation + Delta-G solvation = 11.328905 kcal Electronic energy + Delta-G solvation = -20720.718935 eV Core-core repulsion = 17125.819419 eV Total energy + Delta-G solvation = -3594.899515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.43260 -47.55460 -41.02036 -38.14966 -34.81599 -33.77662 -32.15327 -29.88947 -29.36324 -27.42825 -25.66328 -24.94812 -21.87578 -21.35553 -20.56482 -20.04123 -18.28355 -18.16211 -17.79097 -17.40835 -16.18302 -15.59833 -15.11687 -14.57798 -14.37335 -14.25280 -13.99510 -13.89531 -13.61979 -13.27994 -12.86261 -12.70575 -12.39544 -12.32437 -12.07932 -11.58403 -11.14377 -10.88044 -10.66450 -10.42175 -10.12884 -9.92910 -9.54940 -9.43126 -8.93363 -8.19515 -7.66544 -7.19957 -6.40885 -4.29953 1.69288 1.93060 2.67551 2.73466 3.16127 3.21776 3.27628 3.34069 3.36169 3.85263 4.04266 4.33139 4.36011 4.56476 4.86282 5.19019 5.45050 5.61992 5.85967 6.07600 6.23524 6.35404 6.52934 6.69762 6.80845 6.98018 7.23208 7.43669 7.48779 7.62702 7.78965 7.90824 8.04868 8.16461 8.34414 8.61831 8.78429 8.90940 10.07893 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.004587 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.063133 B = 6103.328603 C = 7131.655250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.049 3.951 3 Si 1.054 2.946 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.073 3.927 10 C -0.187 4.187 11 C -0.118 4.118 12 C -0.211 4.211 13 C -0.156 4.156 14 C 0.084 3.916 15 N -0.651 5.651 16 C 0.074 3.926 17 C 0.048 3.952 18 N -0.266 5.266 19 N -0.446 5.446 20 C 0.521 3.479 21 F -0.179 7.179 22 F -0.185 7.185 23 C -0.015 4.015 24 H 0.297 0.703 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.408 0.592 30 H 0.196 0.804 31 H 0.150 0.850 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 -9.244 -3.964 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.172 4.172 3 Si 0.878 3.122 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.570 4.570 8 H 0.088 0.912 9 C 0.069 3.931 10 C -0.208 4.208 11 C -0.138 4.138 12 C -0.231 4.231 13 C -0.178 4.178 14 C -0.013 4.013 15 N -0.276 5.276 16 C -0.034 4.034 17 C -0.143 4.143 18 N -0.086 5.086 19 N -0.244 5.244 20 C 0.386 3.614 21 F -0.160 7.160 22 F -0.167 7.167 23 C -0.158 4.158 24 H 0.109 0.891 25 H 0.121 0.879 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.245 0.755 30 H 0.212 0.788 31 H 0.166 0.834 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.611 -8.937 -4.351 12.520 hybrid contribution 0.511 -0.504 -0.144 0.732 sum 8.122 -9.441 -4.495 13.241 Atomic orbital electron populations 1.70407 1.08254 1.34320 1.28953 1.26766 0.95460 1.03726 0.91296 0.83808 0.75877 0.74619 0.77850 1.20019 1.20141 1.20338 1.20038 1.05144 0.95435 1.36341 0.91205 1.17254 0.93363 0.90203 0.92325 1.20635 1.04785 0.97221 0.98130 1.20291 1.00628 0.93156 0.99692 1.20139 1.05665 0.95764 1.01525 1.20460 1.02369 0.95808 0.99186 1.17768 0.98909 0.94118 0.90527 1.40918 1.49089 1.04693 1.32855 1.17715 0.91974 0.90061 1.03622 1.24274 1.00567 0.91244 0.98181 1.77318 0.87947 1.23636 1.19658 1.49241 1.10591 1.13337 1.51235 1.21093 0.77370 0.79115 0.83782 1.93106 1.81470 1.70284 1.71176 1.93109 1.64812 1.77866 1.80914 1.21849 0.99547 0.86100 1.08288 0.89084 0.87936 0.89415 0.89180 0.88109 0.75521 0.78788 0.83369 0.80648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.55 12.45 55.55 0.69 -19.86 16 2 C 0.05 1.21 4.78 -17.33 -0.08 1.12 16 3 Si 1.05 20.91 30.02 -169.99 -5.10 15.80 16 4 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.54 -13.37 8.31 -37.92 -0.32 -13.68 16 8 H 0.07 1.65 6.89 -52.48 -0.36 1.29 16 9 C 0.07 1.81 5.17 -106.62 -0.55 1.26 16 10 C -0.19 -4.61 8.28 -39.29 -0.33 -4.94 16 11 C -0.12 -2.65 9.96 -39.98 -0.40 -3.05 16 12 C -0.21 -4.51 10.03 -39.38 -0.40 -4.91 16 13 C -0.16 -3.33 8.35 -39.41 -0.33 -3.66 16 14 C 0.08 1.89 6.61 -83.32 -0.55 1.34 16 15 N -0.65 -12.84 5.51 -8.23 -0.05 -12.89 16 16 C 0.07 1.30 6.37 -83.96 -0.54 0.76 16 17 C 0.05 0.83 9.50 -17.20 -0.16 0.66 16 18 N -0.27 -4.38 12.39 30.72 0.38 -4.00 16 19 N -0.45 -6.35 4.00 -66.28 -0.27 -6.62 16 20 C 0.52 5.42 6.64 59.84 0.40 5.82 16 21 F -0.18 -2.17 17.36 2.25 0.04 -2.13 16 22 F -0.19 -1.97 17.02 2.25 0.04 -1.93 16 23 C -0.02 -0.22 11.13 -16.63 -0.18 -0.41 16 24 H 0.30 7.90 7.53 -40.82 -0.31 7.59 16 25 H 0.10 2.62 7.00 -52.49 -0.37 2.25 16 26 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 27 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 28 H 0.10 1.96 4.92 -52.49 -0.26 1.70 16 29 H 0.41 7.86 7.13 -40.82 -0.29 7.57 16 30 H 0.20 3.23 6.74 -52.48 -0.35 2.87 16 31 H 0.15 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 287.72 15.07 4.34 4.34 Total: -1.00 -27.96 287.72 -5.79 -33.75 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -2.43 Total: 13.21 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -3.43 Total: -19.67 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.76 Total: -43.37 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.08 Total: -4.06 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.10 Total: 15.80 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.96 -5.79 -33.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201742566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.077 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds