Wall clock time and date at job start Tue Mar 31 2020 01:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86800 * 119.99686 * 2 1 4 4 H 1.48495 * 109.47429 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46993 * 120.00238 * 3 2 1 6 6 H 1.48501 * 109.47457 * 240.00251 * 3 2 1 7 7 C 1.39891 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99554 * 150.28844 * 7 2 1 9 9 C 1.40981 * 119.99799 * 330.28782 * 7 2 1 10 10 C 1.40748 * 120.31434 * 329.98581 * 9 7 2 11 11 C 1.36413 * 119.95310 * 179.97438 * 10 9 7 12 12 C 1.38950 * 120.61914 * 0.02562 * 11 10 9 13 13 C 1.38078 * 120.64051 * 359.97438 * 12 11 10 14 14 C 1.38863 * 120.01932 * 359.73962 * 13 12 11 15 15 N 1.38535 * 120.30506 * 180.27504 * 14 13 12 16 16 C 1.40496 * 119.99985 * 7.51765 * 15 14 13 17 17 C 1.40316 * 126.09428 * 34.14547 * 16 15 14 18 18 N 1.30813 * 108.34304 * 179.97438 * 17 16 15 19 19 N 1.40070 * 108.39500 * 359.97438 * 18 17 16 20 20 C 1.46495 * 126.04721 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47005 * 29.97736 * 20 19 18 22 22 F 1.39899 * 109.47446 * 149.97721 * 20 19 18 23 23 C 1.35851 * 126.09090 * 213.83384 * 16 15 14 24 24 H 0.97002 * 119.99865 * 168.61280 * 1 2 3 25 25 H 1.07997 * 120.01972 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.69063 * 180.02562 * 11 10 9 27 27 H 1.08005 * 119.68003 * 179.97438 * 12 11 10 28 28 H 1.07997 * 119.98688 * 179.97438 * 13 12 11 29 29 H 0.96997 * 119.99970 * 187.51309 * 15 14 13 30 30 H 1.08005 * 125.82517 * 0.02562 * 17 16 15 31 31 H 1.08997 * 109.47488 * 269.98212 * 20 19 18 32 32 H 1.08000 * 126.23570 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 1.2779 2.7465 0.0006 5 1 3.0967 1.6964 1.2125 6 1 3.0966 1.6966 -1.2125 7 6 2.0085 -1.2115 -0.0005 8 1 2.9820 -1.2726 -0.4642 9 6 1.4426 -2.3524 0.6041 10 6 0.5670 -2.2164 1.6977 11 6 0.0233 -3.3254 2.2768 12 6 0.3254 -4.5942 1.7978 13 6 1.1811 -4.7567 0.7265 14 6 1.7450 -3.6457 0.1131 15 7 2.5999 -3.8016 -0.9658 16 6 2.7771 -5.0696 -1.5443 17 6 1.7985 -6.0682 -1.6627 18 7 2.3363 -7.1036 -2.2542 19 7 3.6757 -6.8055 -2.5357 20 6 4.6366 -7.6940 -3.1938 21 9 3.9595 -8.5393 -4.0794 22 9 5.5704 -6.9292 -3.9012 23 6 3.9248 -5.5452 -2.0940 24 1 -0.4850 -0.8235 -0.1659 25 1 0.3260 -1.2348 2.0780 26 1 -0.6484 -3.2161 3.1155 27 1 -0.1134 -5.4619 2.2681 28 1 1.4090 -5.7478 0.3631 29 1 3.0761 -3.0352 -1.3219 30 1 0.7756 -5.9942 -1.3241 31 1 5.1517 -8.2926 -2.4425 32 1 4.8646 -5.0178 -2.1657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201742566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:56 Heat of formation + Delta-G solvation = -4.572691 kcal Electronic energy + Delta-G solvation = -20721.408479 eV Core-core repulsion = 17125.819419 eV Total energy + Delta-G solvation = -3595.589060 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.29341 -48.42589 -42.28639 -39.84303 -36.36314 -35.55229 -33.35383 -31.46007 -31.01177 -28.92682 -26.79656 -26.70383 -23.33043 -22.83464 -22.05927 -21.47341 -19.65895 -19.30557 -19.01570 -18.38223 -17.77390 -17.01099 -16.61852 -15.81073 -15.78030 -15.51016 -15.21067 -15.01811 -14.82205 -14.71267 -14.33876 -14.26681 -13.99139 -13.71320 -13.39337 -13.13546 -12.72804 -12.35491 -12.21506 -11.95891 -11.64295 -11.63664 -11.27669 -10.75978 -10.66557 -9.69083 -9.47515 -9.06287 -8.01770 -6.14974 0.49004 0.87167 0.97049 1.04624 1.55240 1.66201 1.79253 1.82056 2.40584 2.57011 2.64966 2.77128 3.14940 3.61337 3.63857 3.76008 3.95374 4.37317 4.44585 4.50769 4.58125 4.73490 5.01521 5.14408 5.23228 5.45663 5.55830 5.69076 5.74975 5.89321 6.11261 6.25180 6.34756 6.43028 6.60842 6.97009 7.08376 7.15326 8.17590 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.004587 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.063133 B = 6103.328603 C = 7131.655250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.013 3.987 3 Si 1.105 2.895 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.040 3.960 10 C -0.205 4.205 11 C -0.133 4.133 12 C -0.200 4.200 13 C -0.165 4.165 14 C 0.092 3.908 15 N -0.653 5.653 16 C 0.036 3.964 17 C 0.038 3.962 18 N -0.279 5.279 19 N -0.442 5.442 20 C 0.515 3.485 21 F -0.189 7.189 22 F -0.185 7.185 23 C 0.017 3.983 24 H 0.278 0.722 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.407 0.593 30 H 0.192 0.808 31 H 0.204 0.796 32 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.944 -10.820 -4.435 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.203 4.203 3 Si 0.924 3.076 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.035 3.965 10 C -0.226 4.226 11 C -0.153 4.153 12 C -0.220 4.220 13 C -0.187 4.187 14 C -0.007 4.007 15 N -0.278 5.278 16 C -0.071 4.071 17 C -0.152 4.152 18 N -0.099 5.099 19 N -0.239 5.239 20 C 0.383 3.617 21 F -0.171 7.171 22 F -0.166 7.166 23 C -0.127 4.127 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.243 0.757 30 H 0.208 0.792 31 H 0.220 0.780 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 9.608 -10.581 -4.864 15.097 hybrid contribution -0.010 -0.280 -0.074 0.290 sum 9.598 -10.862 -4.938 15.313 Atomic orbital electron populations 1.70528 1.09126 1.33078 1.32122 1.28043 0.95449 1.06848 0.89954 0.83155 0.74875 0.70711 0.78829 1.20458 1.19364 1.18209 1.20197 1.05469 0.96165 1.37507 0.90840 1.17538 0.94420 0.91465 0.93048 1.20612 1.05954 0.97024 0.98986 1.20520 1.01188 0.93099 1.00475 1.20547 1.04393 0.96235 1.00785 1.20736 1.02304 0.96503 0.99207 1.17943 0.98303 0.93657 0.90809 1.40796 1.48780 1.05787 1.32409 1.17911 0.93389 0.89659 1.06101 1.24234 1.00659 0.91491 0.98809 1.77289 0.89143 1.23523 1.19982 1.49728 1.10387 1.13559 1.50211 1.22008 0.76571 0.78651 0.84486 1.93091 1.81828 1.70393 1.71763 1.93116 1.64409 1.77997 1.81106 1.22295 0.99700 0.85883 1.04803 0.91059 0.90118 0.87523 0.86187 0.85991 0.75653 0.79155 0.78033 0.77652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.41 12.45 21.82 0.27 -44.14 16 2 C 0.01 0.64 4.78 85.23 0.41 1.05 16 3 Si 1.11 42.67 30.02 68.60 2.06 44.73 16 4 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.56 -28.63 8.31 23.34 0.19 -28.44 16 8 H 0.07 3.53 6.89 -2.91 -0.02 3.51 16 9 C 0.04 2.03 5.17 -21.16 -0.11 1.92 16 10 C -0.21 -10.44 8.28 22.46 0.19 -10.26 16 11 C -0.13 -5.99 9.96 22.01 0.22 -5.77 16 12 C -0.20 -8.28 10.03 22.40 0.22 -8.05 16 13 C -0.16 -6.87 8.35 22.38 0.19 -6.69 16 14 C 0.09 4.14 6.61 39.06 0.26 4.40 16 15 N -0.65 -25.45 5.51 -179.94 -0.99 -26.44 16 16 C 0.04 1.20 6.37 37.70 0.24 1.44 16 17 C 0.04 1.25 9.50 85.35 0.81 2.06 16 18 N -0.28 -8.58 12.39 -56.74 -0.70 -9.28 16 19 N -0.44 -11.13 4.00 -363.62 -1.45 -12.58 16 20 C 0.52 8.67 6.64 127.77 0.85 9.52 16 21 F -0.19 -4.03 17.36 44.97 0.78 -3.25 16 22 F -0.18 -3.22 17.02 44.97 0.77 -2.45 16 23 C 0.02 0.46 11.13 83.52 0.93 1.39 16 24 H 0.28 15.69 7.53 -92.71 -0.70 15.00 16 25 H 0.08 4.35 7.00 -2.91 -0.02 4.33 16 26 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 27 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.12 4.53 4.92 -2.91 -0.01 4.52 16 29 H 0.41 15.62 7.13 -92.71 -0.66 14.96 16 30 H 0.19 6.22 6.74 -2.91 -0.02 6.20 16 31 H 0.20 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.21 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -61.91 287.72 5.72 -56.19 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.60 Total: 34.67 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 4.40 Total: -37.44 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -2.88 Total: -92.45 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 1.55 Total: -5.70 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.06 Total: 44.73 kcal Total: -61.91 5.72 -56.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201742566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.620 kcal (2) G-P(sol) polarization free energy of solvation -61.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds