Wall clock time and date at job start Tue Mar 31 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99711 * 2 1 4 4 C 1.50702 * 109.47573 * 293.95635 * 3 2 1 5 5 H 1.07997 * 119.99552 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00209 * 179.97438 * 4 3 2 7 7 N 1.31523 * 119.99936 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00281 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47103 * 59.99597 * 8 6 4 10 10 H 1.48491 * 109.47470 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46895 * 300.00067 * 8 6 4 12 12 C 1.46895 * 111.00231 * 123.95517 * 2 1 3 13 13 C 1.50708 * 109.47102 * 66.04669 * 12 2 1 14 14 C 1.34226 * 126.56390 * 259.98030 * 13 12 2 15 15 N 1.36904 * 109.91402 * 180.02562 * 14 13 12 16 16 H 0.97005 * 124.99387 * 179.97438 * 15 14 13 17 17 C 1.37474 * 110.02017 * 359.97438 * 15 14 13 18 18 N 1.32641 * 133.17200 * 180.02562 * 17 15 14 19 19 C 1.31588 * 121.68658 * 179.97438 * 18 17 15 20 20 C 1.38775 * 121.56549 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 120.30588 * 180.02562 * 20 19 18 22 22 C 1.38290 * 119.38524 * 359.97438 * 20 19 18 23 23 C 1.39705 * 118.03026 * 0.02562 * 22 20 19 24 24 H 1.08995 * 109.47284 * 296.04114 * 1 2 3 25 25 H 1.09004 * 109.47046 * 56.04497 * 1 2 3 26 26 H 1.09002 * 109.46577 * 176.04333 * 1 2 3 27 27 H 1.09001 * 109.47213 * 53.95709 * 3 2 1 28 28 H 1.09001 * 109.46827 * 173.95203 * 3 2 1 29 29 H 0.96997 * 120.00077 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47474 * 306.05115 * 12 2 1 31 31 H 1.08997 * 109.47330 * 186.04709 * 12 2 1 32 32 H 1.07994 * 125.04213 * 0.02562 * 14 13 12 33 33 H 1.08004 * 119.21922 * 180.27012 * 19 18 17 34 34 H 1.07995 * 120.98680 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 -1.2984 5 1 1.0746 1.5114 -2.0487 6 6 2.0266 3.3496 -1.5284 7 7 2.7118 4.0020 -0.6148 8 14 1.5816 4.1875 -3.1374 9 1 0.1044 4.2238 -3.2846 10 1 2.1138 5.5738 -3.1374 11 1 2.1734 3.4306 -4.2698 12 6 1.9955 -0.7660 1.1375 13 6 1.6370 -2.2205 0.9727 14 6 0.6281 -2.8686 1.5758 15 7 0.6143 -4.1796 1.1816 16 1 -0.0234 -4.8449 1.4843 17 6 1.6371 -4.4149 0.2937 18 7 2.0395 -5.4957 -0.3616 19 6 3.0725 -5.4655 -1.1762 20 6 3.7940 -4.2998 -1.3916 21 17 5.1512 -4.2970 -2.4740 22 6 3.4211 -3.1402 -0.7368 23 6 2.3214 -3.1964 0.1229 24 1 -0.3633 0.4511 0.9233 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3632 -1.0253 -0.0709 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3444 0.1083 29 1 2.9857 4.9184 -0.7764 30 1 1.5612 -0.3874 2.0627 31 1 3.0798 -0.6611 1.1755 32 1 -0.0692 -2.4222 2.2691 33 1 3.3629 -6.3683 -1.6930 34 1 3.9639 -2.2185 -0.8857 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209592637.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:39 Heat of formation + Delta-G solvation = 69.212815 kcal Electronic energy + Delta-G solvation = -18832.135311 eV Core-core repulsion = 15791.542510 eV Total energy + Delta-G solvation = -3040.592801 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56242 -38.10649 -36.57549 -36.22597 -33.09625 -32.36955 -30.28789 -29.44916 -27.11356 -26.52542 -23.94892 -23.57228 -22.54923 -20.62221 -19.24308 -18.26723 -16.85125 -16.36141 -16.17924 -15.29845 -15.11313 -14.75188 -14.24293 -13.89475 -13.48949 -13.38469 -12.99734 -12.92662 -12.62018 -12.01952 -11.84002 -11.53450 -11.35060 -11.13698 -11.02945 -10.86534 -10.67688 -10.45925 -10.10048 -9.85628 -9.50524 -9.22436 -8.42964 -8.34657 -7.92474 -7.21829 -6.02031 -4.03173 0.94935 1.19570 2.12159 2.65856 2.78086 3.34421 3.38468 3.41855 3.78100 4.43652 4.45820 4.68378 4.76040 4.85921 5.14744 5.25738 5.33777 5.42976 5.50015 5.84331 5.99103 6.07209 6.14342 6.25457 6.30665 6.34139 6.57171 6.76042 6.89773 7.21633 7.29083 7.33610 7.80675 7.88460 8.08768 8.20606 8.55324 9.04311 9.61066 11.08711 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.004841 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.045227 B = 5782.512714 C = 6982.439212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.535 5.535 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.120 3.880 13 C -0.124 4.124 14 C 0.054 3.946 15 N -0.580 5.580 16 H 0.419 0.581 17 C 0.283 3.717 18 N -0.490 5.490 19 C 0.148 3.852 20 C -0.124 4.124 21 Cl -0.062 7.062 22 C 0.001 3.999 23 C -0.121 4.121 24 H 0.009 0.991 25 H 0.072 0.928 26 H 0.044 0.956 27 H -0.009 1.009 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.177 0.823 33 H 0.165 0.835 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -17.315 3.682 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.259 5.259 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.008 4.008 13 C -0.131 4.131 14 C -0.072 4.072 15 N -0.186 5.186 16 H 0.256 0.744 17 C 0.049 3.951 18 N -0.203 5.203 19 C -0.019 4.019 20 C -0.155 4.155 21 Cl -0.034 7.034 22 C -0.026 4.026 23 C -0.129 4.129 24 H 0.028 0.972 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.009 0.991 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.194 0.806 33 H 0.182 0.818 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.382 -18.145 3.432 18.519 hybrid contribution -0.268 1.418 -0.206 1.458 sum -1.650 -16.727 3.225 17.115 Atomic orbital electron populations 1.22196 0.88974 0.99446 1.00332 1.62101 1.06981 1.17480 1.39379 1.19741 0.95404 0.81389 0.96647 1.21115 1.34847 0.96849 1.01693 0.91954 1.24970 0.95301 0.97339 0.96915 1.69946 1.38374 1.11484 1.34090 0.86577 0.78673 0.78350 0.83915 1.20330 1.21368 1.20147 1.20414 1.00318 0.87103 0.93014 1.20356 0.97290 0.95658 0.99838 1.21710 1.00735 0.82224 1.02512 1.41442 1.27429 1.10677 1.39101 0.74407 1.18434 0.91422 0.90801 0.94407 1.66576 1.15506 1.28664 1.09599 1.22294 0.89229 0.96535 0.93813 1.21592 0.95905 0.96663 1.01321 1.98360 1.43256 1.98796 1.62984 1.20983 0.93437 0.97425 0.90715 1.19616 0.97870 0.94167 1.01227 0.97220 0.90891 0.93746 0.99108 0.95173 0.92891 0.94818 0.90429 0.80596 0.81777 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.17 60.07 0.55 1.30 16 2 N -0.54 -11.20 4.74 -245.82 -1.17 -12.36 16 3 C 0.19 4.90 4.72 -4.97 -0.02 4.88 16 4 C -0.51 -14.06 8.46 -34.44 -0.29 -14.35 16 5 H 0.06 1.73 7.12 -52.49 -0.37 1.35 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 C 0.12 2.06 5.50 -4.97 -0.03 2.03 16 13 C -0.12 -1.85 4.92 -102.76 -0.51 -2.35 16 14 C 0.05 0.63 11.07 -16.70 -0.18 0.45 16 15 N -0.58 -6.54 6.05 -12.14 -0.07 -6.62 16 16 H 0.42 3.39 8.96 -40.82 -0.37 3.02 16 17 C 0.28 4.03 8.43 -155.66 -1.31 2.72 16 18 N -0.49 -6.84 10.38 -12.23 -0.13 -6.97 16 19 C 0.15 1.86 10.95 -17.46 -0.19 1.67 16 20 C -0.12 -1.66 6.34 -39.36 -0.25 -1.91 16 21 Cl -0.06 -0.76 28.98 -51.86 -1.50 -2.27 16 22 C 0.00 0.02 10.02 -39.01 -0.39 -0.38 16 23 C -0.12 -1.87 6.37 -105.11 -0.67 -2.54 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 26 H 0.04 0.74 6.77 -51.93 -0.35 0.39 16 27 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 28 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 30 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.08 1.35 7.93 -51.93 -0.41 0.93 16 32 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.17 1.56 8.06 -52.48 -0.42 1.13 16 34 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -31.18 308.05 -9.84 -41.02 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -3.94 Total: -1.28 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.39 Total: -7.02 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.63 Total: -51.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.18 -9.84 -41.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209592637.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.231 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds