Wall clock time and date at job start Tue Mar 31 2020 01:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00049 * 2 1 4 4 H 1.48503 * 109.46877 * 95.35490 * 3 2 1 5 5 H 1.48501 * 109.47185 * 335.35690 * 3 2 1 6 6 H 1.48496 * 109.47348 * 215.35471 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99730 * 29.16252 * 7 2 1 9 9 N 1.36933 * 119.99719 * 209.16582 * 7 2 1 10 10 C 1.47021 * 125.65083 * 9.38726 * 9 7 2 11 11 C 1.54332 * 107.26555 * 178.84852 * 10 9 7 12 12 C 1.55156 * 103.02210 * 338.13987 * 11 10 9 13 13 H 1.09004 * 111.00725 * 277.23315 * 12 11 10 14 14 O 1.42900 * 111.03819 * 153.39617 * 12 11 10 15 15 C 1.35679 * 116.99835 * 156.33562 * 14 12 11 16 16 N 1.32274 * 119.68846 * 359.97438 * 15 14 12 17 17 C 1.31927 * 121.65339 * 180.02562 * 16 15 14 18 18 C 1.38089 * 120.83301 * 0.02562 * 17 16 15 19 19 C 1.38793 * 119.28779 * 359.97438 * 18 17 16 20 20 C 1.38427 * 118.48032 * 359.73332 * 19 18 17 21 21 N 1.47994 * 120.43937 * 180.26505 * 20 19 18 22 22 O 1.21801 * 120.00576 * 0.26916 * 21 20 19 23 23 O 1.21802 * 119.99800 * 180.26827 * 21 20 19 24 24 C 1.47429 * 125.64488 * 189.69235 * 9 7 2 25 25 H 0.96999 * 119.99811 * 184.89936 * 1 2 3 26 26 H 1.09004 * 109.88168 * 298.38929 * 10 9 7 27 27 H 1.08999 * 109.88416 * 59.56028 * 10 9 7 28 28 H 1.08997 * 110.85272 * 219.66826 * 11 10 9 29 29 H 1.09003 * 110.51893 * 96.44990 * 11 10 9 30 30 H 1.08001 * 119.58929 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.36014 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.75946 * 180.02562 * 19 18 17 33 33 H 1.08996 * 110.36839 * 322.93314 * 24 9 7 34 34 H 1.09000 * 110.36348 * 85.25464 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6109 1.9811 1.3940 5 1 1.3957 2.6827 -0.5838 6 1 3.4866 1.4755 -0.8101 7 6 2.0103 -1.2022 -0.0005 8 1 1.5730 -2.0779 -0.4567 9 7 3.2494 -1.2775 0.5774 10 6 3.8778 -0.2310 1.3968 11 6 5.2507 -0.7689 1.8527 12 6 5.0832 -2.3062 1.7269 13 1 4.5884 -2.7187 2.6062 14 8 6.3432 -2.9431 1.5057 15 6 6.4437 -4.2492 1.8593 16 7 5.3985 -4.8684 2.3827 17 6 5.4532 -6.1370 2.7406 18 6 6.6136 -6.8682 2.5804 19 6 7.7328 -6.2549 2.0347 20 6 7.6413 -4.9244 1.6636 21 7 8.8062 -4.2293 1.0721 22 8 9.8529 -4.8292 0.9044 23 8 8.7183 -3.0571 0.7530 24 6 4.1769 -2.4190 0.4756 25 1 -0.4850 -0.8370 0.0717 26 1 4.0103 0.6742 0.8043 27 1 3.2571 -0.0192 2.2674 28 1 5.4546 -0.4864 2.8855 29 1 6.0399 -0.4115 1.1911 30 1 4.5797 -6.6095 3.1651 31 1 6.6498 -7.9065 2.8756 32 1 8.6525 -6.8044 1.8984 33 1 3.6250 -3.3588 0.4904 34 1 4.7738 -2.3429 -0.4333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225593020.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:14 Heat of formation + Delta-G solvation = 39.619870 kcal Electronic energy + Delta-G solvation = -21709.682015 eV Core-core repulsion = 18227.096803 eV Total energy + Delta-G solvation = -3482.585212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.30529 -40.94570 -38.94001 -36.85924 -36.39045 -33.50921 -32.65311 -31.47141 -29.62824 -28.19299 -26.90813 -24.73143 -23.47309 -23.21502 -20.98343 -20.50428 -19.63055 -18.81570 -18.61297 -17.62233 -17.58390 -16.96686 -16.03093 -15.76534 -15.19882 -14.89390 -14.23136 -13.90322 -13.65519 -13.33530 -13.29605 -12.65987 -12.39596 -12.15300 -11.58483 -11.38047 -11.28928 -11.13525 -11.09175 -10.91653 -10.65499 -10.58955 -10.39776 -10.17688 -9.61124 -9.24974 -9.19127 -8.49308 -7.15961 -6.41422 -3.23426 -0.39007 0.53957 1.15219 1.28027 2.47324 2.99541 3.42327 3.53840 3.62802 3.70850 3.95217 4.14900 4.27423 4.60002 4.60652 4.86885 4.97092 5.05626 5.12479 5.25736 5.33749 5.44345 5.52490 5.75499 5.88196 6.09829 6.20690 6.31198 6.42029 6.43654 6.68757 6.94145 7.12111 7.61554 7.64480 8.28720 8.96333 9.51190 10.17072 11.07922 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027651 B = 0.004715 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.383569 B = 5937.066902 C = 6637.324407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.010 4.010 3 Si 1.050 2.950 4 H -0.292 1.292 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.121 3.879 11 C -0.123 4.123 12 C 0.066 3.934 13 H 0.103 0.897 14 O -0.258 6.258 15 C 0.400 3.600 16 N -0.523 5.523 17 C 0.198 3.802 18 C -0.221 4.221 19 C 0.023 3.977 20 C -0.133 4.133 21 N 0.040 4.960 22 O -0.184 6.184 23 O -0.126 6.126 24 C 0.125 3.875 25 H 0.265 0.735 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.181 0.819 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.052 0.948 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.662 -14.156 8.069 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.211 4.211 3 Si 0.883 3.117 4 H -0.219 1.219 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.332 5.332 10 C -0.004 4.004 11 C -0.161 4.161 12 C 0.010 3.990 13 H 0.121 0.879 14 O -0.160 6.160 15 C 0.218 3.782 16 N -0.248 5.248 17 C 0.040 3.960 18 C -0.242 4.242 19 C -0.004 4.004 20 C -0.221 4.221 21 N 0.558 4.442 22 O -0.392 6.392 23 O -0.349 6.349 24 C -0.002 4.002 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.198 0.802 31 H 0.177 0.823 32 H 0.185 0.815 33 H 0.070 0.930 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 13.265 -12.181 8.204 19.790 hybrid contribution 1.095 -2.050 -0.199 2.332 sum 14.360 -14.230 8.004 21.744 Atomic orbital electron populations 1.70903 1.06176 1.29374 1.48415 1.25759 0.96052 1.00652 0.98671 0.84037 0.74409 0.76902 0.76391 1.21936 1.22456 1.21870 1.20009 0.89887 0.98318 1.37929 0.90329 1.44688 1.16153 1.13779 1.58551 1.21663 0.90919 0.92848 0.94986 1.22739 0.99355 0.91672 1.02286 1.24027 0.80754 0.93025 1.01198 0.87887 1.86578 1.37567 1.16949 1.74955 1.19589 0.86905 0.86464 0.85233 1.67940 1.27238 1.12663 1.16974 1.23115 0.97755 0.87525 0.87609 1.22091 0.92893 1.03122 1.06054 1.21423 1.00635 0.90059 0.88235 1.21298 0.87649 0.95537 1.17576 1.43169 1.01263 1.01117 0.98602 1.94505 1.16960 1.68072 1.59629 1.94651 1.89741 0.98748 1.51774 1.21840 0.91464 0.93118 0.93787 0.92543 0.94738 0.93521 0.90311 0.89688 0.80227 0.82260 0.81484 0.93009 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.20 13.70 55.49 0.76 -27.44 16 2 C -0.01 -0.29 5.41 -17.43 -0.09 -0.38 16 3 Si 1.05 26.55 24.71 -169.99 -4.20 22.35 16 4 H -0.29 -6.86 6.70 56.52 0.38 -6.48 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.29 -7.14 6.84 56.52 0.39 -6.76 16 7 C -0.34 -9.62 10.41 -15.06 -0.16 -9.78 16 8 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 9 N -0.60 -15.00 3.29 -170.07 -0.56 -15.56 16 10 C 0.12 2.64 4.94 -3.06 -0.02 2.63 16 11 C -0.12 -2.13 6.68 -24.89 -0.17 -2.30 16 12 C 0.07 1.16 3.22 -24.58 -0.08 1.08 16 13 H 0.10 1.75 7.17 -51.93 -0.37 1.38 16 14 O -0.26 -4.30 7.97 -40.76 -0.32 -4.63 16 15 C 0.40 5.72 7.47 -17.12 -0.13 5.60 16 16 N -0.52 -6.63 8.73 -13.33 -0.12 -6.75 16 17 C 0.20 1.59 11.18 -17.57 -0.20 1.39 16 18 C -0.22 -1.36 10.11 -39.43 -0.40 -1.76 16 19 C 0.02 0.19 9.67 -39.31 -0.38 -0.19 16 20 C -0.13 -1.71 6.89 -79.65 -0.55 -2.26 16 21 N 0.04 0.61 4.45 34.11 0.15 0.76 16 22 O -0.18 -2.68 18.52 -29.46 -0.55 -3.23 16 23 O -0.13 -2.16 17.27 -36.46 -0.63 -2.79 16 24 C 0.12 2.62 6.97 -2.53 -0.02 2.60 16 25 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 26 H 0.04 0.80 3.91 -51.93 -0.20 0.59 16 27 H 0.05 1.04 7.86 -51.93 -0.41 0.63 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.16 0.38 8.06 -52.49 -0.42 -0.05 16 32 H 0.17 1.02 7.69 -52.49 -0.40 0.62 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 294.36 15.07 4.44 4.44 Total: -1.00 -34.00 294.36 -6.75 -40.74 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -3.54 Total: -4.54 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.18 Total: -3.36 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.24 Total: -48.98 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -1.50 Total: -10.65 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -4.20 Total: 22.35 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.00 -6.75 -40.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225593020.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.365 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds