Wall clock time and date at job start Tue Mar 31 2020 01:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00049 * 2 1 4 4 H 1.48503 * 109.46877 * 95.35490 * 3 2 1 5 5 H 1.48501 * 109.47185 * 335.35690 * 3 2 1 6 6 H 1.48496 * 109.47348 * 215.35471 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99730 * 29.16252 * 7 2 1 9 9 N 1.36933 * 119.99719 * 209.16582 * 7 2 1 10 10 C 1.47021 * 125.65083 * 9.38726 * 9 7 2 11 11 C 1.54332 * 107.26555 * 178.84852 * 10 9 7 12 12 C 1.55156 * 103.02210 * 338.13987 * 11 10 9 13 13 H 1.09004 * 111.00725 * 277.23315 * 12 11 10 14 14 O 1.42900 * 111.03819 * 153.39617 * 12 11 10 15 15 C 1.35679 * 116.99835 * 156.33562 * 14 12 11 16 16 N 1.32274 * 119.68846 * 359.97438 * 15 14 12 17 17 C 1.31927 * 121.65339 * 180.02562 * 16 15 14 18 18 C 1.38089 * 120.83301 * 0.02562 * 17 16 15 19 19 C 1.38793 * 119.28779 * 359.97438 * 18 17 16 20 20 C 1.38427 * 118.48032 * 359.73332 * 19 18 17 21 21 N 1.47994 * 120.43937 * 180.26505 * 20 19 18 22 22 O 1.21801 * 120.00576 * 0.26916 * 21 20 19 23 23 O 1.21802 * 119.99800 * 180.26827 * 21 20 19 24 24 C 1.47429 * 125.64488 * 189.69235 * 9 7 2 25 25 H 0.96999 * 119.99811 * 184.89936 * 1 2 3 26 26 H 1.09004 * 109.88168 * 298.38929 * 10 9 7 27 27 H 1.08999 * 109.88416 * 59.56028 * 10 9 7 28 28 H 1.08997 * 110.85272 * 219.66826 * 11 10 9 29 29 H 1.09003 * 110.51893 * 96.44990 * 11 10 9 30 30 H 1.08001 * 119.58929 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.36014 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.75946 * 180.02562 * 19 18 17 33 33 H 1.08996 * 110.36839 * 322.93314 * 24 9 7 34 34 H 1.09000 * 110.36348 * 85.25464 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6109 1.9811 1.3940 5 1 1.3957 2.6827 -0.5838 6 1 3.4866 1.4755 -0.8101 7 6 2.0103 -1.2022 -0.0005 8 1 1.5730 -2.0779 -0.4567 9 7 3.2494 -1.2775 0.5774 10 6 3.8778 -0.2310 1.3968 11 6 5.2507 -0.7689 1.8527 12 6 5.0832 -2.3062 1.7269 13 1 4.5884 -2.7187 2.6062 14 8 6.3432 -2.9431 1.5057 15 6 6.4437 -4.2492 1.8593 16 7 5.3985 -4.8684 2.3827 17 6 5.4532 -6.1370 2.7406 18 6 6.6136 -6.8682 2.5804 19 6 7.7328 -6.2549 2.0347 20 6 7.6413 -4.9244 1.6636 21 7 8.8062 -4.2293 1.0721 22 8 9.8529 -4.8292 0.9044 23 8 8.7183 -3.0571 0.7530 24 6 4.1769 -2.4190 0.4756 25 1 -0.4850 -0.8370 0.0717 26 1 4.0103 0.6742 0.8043 27 1 3.2571 -0.0192 2.2674 28 1 5.4546 -0.4864 2.8855 29 1 6.0399 -0.4115 1.1911 30 1 4.5797 -6.6095 3.1651 31 1 6.6498 -7.9065 2.8756 32 1 8.6525 -6.8044 1.8984 33 1 3.6250 -3.3588 0.4904 34 1 4.7738 -2.3429 -0.4333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225593020.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:13 Heat of formation + Delta-G solvation = 15.246646 kcal Electronic energy + Delta-G solvation = -21710.738917 eV Core-core repulsion = 18227.096803 eV Total energy + Delta-G solvation = -3483.642114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.34110 -41.92766 -40.15680 -38.33799 -37.55265 -34.70422 -34.32209 -32.49076 -31.33888 -29.81177 -27.86596 -26.28259 -24.80325 -24.11141 -22.63540 -22.11600 -20.63917 -19.89162 -19.74651 -19.57152 -18.68691 -17.97550 -17.26067 -16.88763 -16.58110 -16.21094 -15.60663 -15.34674 -15.00095 -14.61420 -14.31762 -14.19517 -13.93899 -13.61268 -13.15262 -13.06874 -12.72464 -12.35973 -12.31370 -12.25995 -12.08099 -11.92818 -11.71301 -11.66141 -11.20946 -11.09806 -10.65945 -10.10567 -9.24131 -8.74265 -5.48602 -1.31671 -0.20088 0.17024 0.30581 1.38822 1.40532 1.52711 1.71649 2.23689 2.50276 2.75142 2.96906 3.11960 3.28603 3.44698 3.48186 3.63108 3.66311 3.93778 4.03514 4.20410 4.36067 4.49899 4.59596 4.67124 4.72872 4.73816 4.80574 5.02523 5.06454 5.23126 5.48094 5.80105 6.03732 6.29933 6.49647 6.73539 7.36098 8.02336 8.76863 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027651 B = 0.004715 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.383569 B = 5937.066902 C = 6637.324407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.060 4.060 3 Si 1.093 2.907 4 H -0.261 1.261 5 H -0.301 1.301 6 H -0.283 1.283 7 C -0.331 4.331 8 H 0.047 0.953 9 N -0.623 5.623 10 C 0.111 3.889 11 C -0.112 4.112 12 C 0.088 3.912 13 H 0.108 0.892 14 O -0.276 6.276 15 C 0.372 3.628 16 N -0.552 5.552 17 C 0.194 3.806 18 C -0.183 4.183 19 C 0.024 3.976 20 C -0.148 4.148 21 N 0.042 4.958 22 O -0.159 6.159 23 O -0.197 6.197 24 C 0.125 3.875 25 H 0.253 0.747 26 H 0.031 0.969 27 H 0.045 0.955 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.219 0.781 31 H 0.213 0.787 32 H 0.196 0.804 33 H 0.043 0.957 34 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.617 -16.334 10.064 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.256 4.256 3 Si 0.920 3.080 4 H -0.187 1.187 5 H -0.230 1.230 6 H -0.210 1.210 7 C -0.459 4.459 8 H 0.065 0.935 9 N -0.352 5.352 10 C -0.013 4.013 11 C -0.150 4.150 12 C 0.031 3.969 13 H 0.126 0.874 14 O -0.179 6.179 15 C 0.191 3.809 16 N -0.277 5.277 17 C 0.038 3.962 18 C -0.203 4.203 19 C -0.002 4.002 20 C -0.236 4.236 21 N 0.554 4.446 22 O -0.376 6.376 23 O -0.403 6.403 24 C -0.002 4.002 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.132 0.868 29 H 0.108 0.892 30 H 0.235 0.765 31 H 0.230 0.770 32 H 0.214 0.786 33 H 0.061 0.939 34 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 15.208 -14.284 10.206 23.227 hybrid contribution 0.513 -1.808 -0.779 2.034 sum 15.721 -16.092 9.427 24.392 Atomic orbital electron populations 1.70996 1.07225 1.28725 1.51396 1.26918 0.96092 1.03885 0.98683 0.83463 0.73369 0.73032 0.78172 1.18671 1.22957 1.20965 1.19894 0.91544 0.97262 1.37192 0.93455 1.44734 1.15783 1.15899 1.58734 1.21828 0.93072 0.92157 0.94211 1.22701 0.96627 0.91308 1.04363 1.23566 0.80962 0.93469 0.98900 0.87373 1.86550 1.36273 1.18853 1.76220 1.19775 0.88150 0.85901 0.87081 1.67938 1.26927 1.15069 1.17783 1.23942 0.99964 0.86043 0.86247 1.22680 0.90605 1.04810 1.02211 1.21962 1.02707 0.88127 0.87398 1.21579 0.86206 0.96914 1.18881 1.43519 1.01889 1.00956 0.98187 1.94447 1.17634 1.67565 1.57988 1.94661 1.90438 1.00074 1.55137 1.21871 0.91313 0.91433 0.95535 0.93835 0.95152 0.93745 0.86773 0.89200 0.76499 0.77018 0.78648 0.93861 0.96243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.14 13.70 21.65 0.30 -59.84 16 2 C -0.06 -3.59 5.41 84.86 0.46 -3.13 16 3 Si 1.09 53.94 24.71 68.60 1.70 55.63 16 4 H -0.26 -11.52 6.70 99.48 0.67 -10.86 16 5 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 6 H -0.28 -13.42 6.84 99.48 0.68 -12.74 16 7 C -0.33 -19.64 10.41 84.04 0.87 -18.77 16 8 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 9 N -0.62 -31.43 3.29 -691.97 -2.28 -33.70 16 10 C 0.11 4.78 4.94 86.73 0.43 5.21 16 11 C -0.11 -3.75 6.68 31.79 0.21 -3.54 16 12 C 0.09 3.05 3.22 31.99 0.10 3.15 16 13 H 0.11 3.60 7.17 -2.38 -0.02 3.58 16 14 O -0.28 -9.21 7.97 -68.92 -0.55 -9.76 16 15 C 0.37 10.33 7.47 84.78 0.63 10.96 16 16 N -0.55 -12.94 8.73 -308.94 -2.70 -15.64 16 17 C 0.19 2.31 11.18 84.64 0.95 3.25 16 18 C -0.18 -1.23 10.11 22.37 0.23 -1.00 16 19 C 0.02 0.31 9.67 22.45 0.22 0.52 16 20 C -0.15 -3.55 6.89 36.58 0.25 -3.30 16 21 N 0.04 1.24 4.45 -46.01 -0.20 1.04 16 22 O -0.16 -4.37 18.52 18.88 0.35 -4.02 16 23 O -0.20 -6.97 17.27 25.58 0.44 -6.53 16 24 C 0.12 5.35 6.97 86.85 0.61 5.96 16 25 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 26 H 0.03 1.36 3.91 -2.39 -0.01 1.35 16 27 H 0.04 1.92 7.86 -2.39 -0.02 1.90 16 28 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.22 0.81 8.06 -2.91 -0.02 0.79 16 31 H 0.21 -0.70 8.06 -2.91 -0.02 -0.73 16 32 H 0.20 1.39 7.69 -2.91 -0.02 1.36 16 33 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 34 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -79.23 294.36 3.04 -76.19 By element: Atomic # 1 Polarization: -3.70 SS G_CDS: 1.03 Total: -2.68 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.96 Total: -0.68 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -4.88 Total: -108.15 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.24 Total: -20.32 kcal Atomic # 14 Polarization: 53.94 SS G_CDS: 1.70 Total: 55.63 kcal Total: -79.23 3.04 -76.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225593020.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.436 kcal (2) G-P(sol) polarization free energy of solvation -79.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds