Wall clock time and date at job start Tue Mar 31 2020 01:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99945 * 2 1 4 4 H 1.48500 * 109.47203 * 270.00160 * 3 2 1 5 5 H 1.48503 * 109.47217 * 30.00111 * 3 2 1 6 6 H 1.48501 * 109.47186 * 150.00248 * 3 2 1 7 7 C 1.38811 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99725 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99937 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.65081 * 359.95576 * 9 7 2 11 11 C 1.54910 * 104.83451 * 204.16371 * 10 9 7 12 12 C 1.55162 * 101.58215 * 322.99421 * 11 10 9 13 13 H 1.09004 * 110.86692 * 277.06660 * 12 11 10 14 14 O 1.42893 * 110.72046 * 153.86229 * 12 11 10 15 15 C 1.35918 * 116.99702 * 155.02175 * 14 12 11 16 16 C 1.39137 * 120.47312 * 0.02562 * 15 14 12 17 17 C 1.38539 * 118.37208 * 180.02562 * 16 15 14 18 18 C 1.38249 * 119.22143 * 0.25509 * 17 16 15 19 19 N 1.31848 * 120.88707 * 359.47296 * 18 17 16 20 20 C 1.31845 * 121.77992 * 0.53902 * 19 18 17 21 21 N 1.35500 * 119.65836 * 179.70720 * 20 19 18 22 22 O 1.21799 * 120.00145 * 180.02562 * 21 20 19 23 23 O 1.21801 * 120.00178 * 0.02562 * 21 20 19 24 24 C 1.47027 * 125.64404 * 179.97438 * 9 7 2 25 25 H 0.97005 * 120.00005 * 359.97438 * 1 2 3 26 26 H 1.08998 * 110.36566 * 323.00524 * 10 9 7 27 27 H 1.09000 * 110.36483 * 85.21961 * 10 9 7 28 28 H 1.08992 * 111.00856 * 204.91745 * 11 10 9 29 29 H 1.09000 * 111.00264 * 81.06126 * 11 10 9 30 30 H 1.07994 * 120.81428 * 359.97438 * 16 15 14 31 31 H 1.08002 * 120.38514 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.55806 * 179.72699 * 18 17 16 33 33 H 1.08999 * 109.88466 * 59.48542 * 24 9 7 34 34 H 1.08996 * 109.87984 * 298.32029 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0009 11 6 -0.4015 -3.9319 0.6138 12 6 0.7784 -4.7524 0.0290 13 1 0.5477 -5.1010 -0.9777 14 8 1.1005 -5.8529 0.8818 15 6 1.7074 -6.9235 0.3048 16 6 1.9923 -6.9239 -1.0571 17 6 2.6112 -8.0382 -1.5999 18 6 2.9182 -9.1069 -0.7784 19 7 2.6392 -9.0725 0.5097 20 6 2.0509 -8.0315 1.0652 21 7 1.7788 -8.0443 2.3925 22 8 1.2351 -7.0862 2.9121 23 8 2.0779 -9.0140 3.0662 24 6 1.9318 -3.7275 0.0005 25 1 -0.4850 0.8401 0.0004 26 1 -0.5991 -1.7584 0.6161 27 1 -0.5276 -2.4856 -1.0173 28 1 -1.3589 -4.3325 0.2808 29 1 -0.3516 -3.8970 1.7020 30 1 1.7364 -6.0767 -1.6760 31 1 2.8469 -8.0733 -2.6533 32 1 3.3967 -9.9802 -1.1967 33 1 2.5588 -3.8506 0.8836 34 1 2.5277 -3.8646 -0.9018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225630102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:03 Heat of formation + Delta-G solvation = 54.598026 kcal Electronic energy + Delta-G solvation = -21748.171775 eV Core-core repulsion = 18266.236065 eV Total energy + Delta-G solvation = -3481.935710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.91195 -40.83788 -39.14960 -36.76182 -36.15462 -33.36990 -32.63117 -31.59142 -29.46213 -27.74774 -27.46147 -25.03255 -23.77649 -23.07173 -20.61521 -20.52045 -19.77378 -18.85346 -18.30915 -17.86934 -17.28963 -16.65790 -15.88787 -15.65605 -15.00963 -14.80444 -14.40879 -13.98546 -13.52574 -13.26316 -12.90310 -12.69670 -12.01991 -11.71744 -11.24235 -11.16400 -11.13952 -10.92284 -10.88394 -10.79763 -10.73872 -10.48164 -10.35248 -10.20171 -10.03532 -9.77844 -9.08805 -8.80848 -7.04826 -5.81271 -3.24735 -0.53119 0.57400 1.39211 1.85986 2.58574 3.05900 3.32105 3.37872 3.39897 3.65028 4.00240 4.18048 4.24616 4.36789 4.58123 4.79544 4.95190 5.16204 5.25500 5.34041 5.36968 5.49159 5.62651 6.04476 6.16276 6.19806 6.29538 6.37325 6.63512 6.91113 6.99480 7.26459 7.45026 7.66570 7.95642 8.17027 9.04276 9.64280 10.25201 11.23144 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028316 B = 0.004275 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.608768 B = 6548.256324 C = 6882.322305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.918 3.082 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.598 5.598 10 C 0.152 3.848 11 C -0.133 4.133 12 C 0.052 3.948 13 H 0.085 0.915 14 O -0.249 6.249 15 C 0.185 3.815 16 C -0.174 4.174 17 C -0.066 4.066 18 C 0.069 3.931 19 N -0.385 5.385 20 C 0.091 3.909 21 N 0.072 4.928 22 O -0.155 6.155 23 O -0.174 6.174 24 C 0.121 3.879 25 H 0.255 0.745 26 H 0.117 0.883 27 H 0.019 0.981 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.182 0.818 33 H 0.039 0.961 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -15.349 -5.968 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.748 3.252 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.326 5.326 10 C 0.027 3.973 11 C -0.172 4.172 12 C -0.003 4.003 13 H 0.102 0.898 14 O -0.156 6.156 15 C 0.129 3.871 16 C -0.201 4.201 17 C -0.086 4.086 18 C -0.096 4.096 19 N -0.100 5.100 20 C -0.130 4.130 21 N 0.581 4.419 22 O -0.360 6.360 23 O -0.379 6.379 24 C -0.006 4.006 25 H 0.066 0.934 26 H 0.135 0.865 27 H 0.037 0.963 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.199 0.801 33 H 0.057 0.943 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.661 -15.678 -5.747 16.908 hybrid contribution 0.313 1.439 -0.611 1.595 sum 2.975 -14.238 -6.358 15.874 Atomic orbital electron populations 1.69736 1.04965 1.25204 1.57026 1.24804 0.95776 0.97861 1.01768 0.86019 0.78611 0.82920 0.77611 1.21504 1.21423 1.20558 1.19062 0.90586 0.82046 1.44023 0.90294 1.44337 1.01836 0.99175 1.87213 1.22046 0.84779 0.91757 0.98675 1.23278 0.94198 0.97262 1.02467 1.24192 0.99029 0.83867 0.93239 0.89772 1.86648 1.68453 1.23080 1.37400 1.19848 0.87788 0.87392 0.92022 1.22093 1.02686 1.02102 0.93226 1.22544 0.91738 0.91771 1.02545 1.22766 1.00427 0.99813 0.86632 1.66837 1.06075 1.22481 1.14599 1.18521 1.13315 0.94369 0.86789 1.39226 1.00022 1.01110 1.01567 1.94703 1.41531 1.25740 1.74071 1.94563 1.55898 1.24968 1.62521 1.21652 0.93275 0.86579 0.99075 0.93414 0.86502 0.96326 0.91126 0.89847 0.81365 0.82146 0.80078 0.94341 0.95479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.66 10.09 55.49 0.56 -25.10 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.23 -6.15 10.27 -15.06 -0.15 -6.30 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.54 3.39 -170.08 -0.58 -15.12 16 10 C 0.15 3.43 5.89 -2.53 -0.01 3.42 16 11 C -0.13 -2.40 6.81 -24.58 -0.17 -2.56 16 12 C 0.05 0.85 2.85 -24.89 -0.07 0.78 16 13 H 0.08 1.13 5.94 -51.93 -0.31 0.82 16 14 O -0.25 -4.12 7.63 -42.88 -0.33 -4.44 16 15 C 0.19 2.62 6.65 -39.08 -0.26 2.36 16 16 C -0.17 -1.76 9.12 -39.14 -0.36 -2.12 16 17 C -0.07 -0.46 10.11 -39.47 -0.40 -0.86 16 18 C 0.07 0.58 11.18 -17.54 -0.20 0.38 16 19 N -0.39 -5.12 9.82 -13.49 -0.13 -5.25 16 20 C 0.09 1.42 7.37 -158.97 -1.17 0.24 16 21 N 0.07 1.30 4.06 30.26 0.12 1.42 16 22 O -0.15 -2.98 16.76 -36.87 -0.62 -3.60 16 23 O -0.17 -3.21 18.74 -29.46 -0.55 -3.76 16 24 C 0.12 2.37 7.02 -3.06 -0.02 2.35 16 25 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.12 3.01 5.87 -51.93 -0.30 2.70 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.17 1.49 6.00 -52.49 -0.32 1.17 16 31 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 32 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 294.81 15.07 4.44 4.44 Total: -1.00 -32.26 294.81 -8.44 -40.70 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -3.43 Total: -3.02 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.91 Total: -2.56 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.03 Total: -44.05 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.50 Total: -11.80 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.26 -8.44 -40.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225630102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.302 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds