Wall clock time and date at job start Tue Mar 31 2020 01:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00141 * 2 1 4 4 H 1.48503 * 109.47130 * 270.00014 * 3 2 1 5 5 H 1.48499 * 109.47340 * 29.99861 * 3 2 1 6 6 H 1.48503 * 109.47227 * 149.99837 * 3 2 1 7 7 C 1.37878 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50711 * 119.99818 * 359.72480 * 7 2 1 10 10 N 1.46901 * 109.46603 * 180.27343 * 9 7 2 11 11 C 1.47473 * 111.00217 * 265.96785 * 10 9 7 12 12 C 1.53511 * 87.93756 * 221.30205 * 11 10 9 13 13 O 1.42899 * 114.34519 * 272.37203 * 12 11 10 14 14 C 1.35910 * 116.99445 * 250.48259 * 13 12 11 15 15 C 1.39135 * 120.47934 * 5.65046 * 14 13 12 16 16 C 1.38534 * 118.37801 * 180.02562 * 15 14 13 17 17 C 1.38254 * 119.22096 * 359.97438 * 16 15 14 18 18 N 1.48007 * 119.55581 * 179.97438 * 17 16 15 19 19 O 1.21796 * 119.99929 * 0.02562 * 18 17 16 20 20 O 1.21802 * 119.99835 * 180.02562 * 18 17 16 21 21 N 1.31844 * 120.88763 * 0.02562 * 17 16 15 22 22 C 1.31848 * 121.77811 * 359.69776 * 21 17 16 23 23 C 1.47485 * 110.99328 * 170.00067 * 10 9 7 24 24 H 0.97005 * 119.99992 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46837 * 300.27760 * 9 7 2 26 26 H 1.09000 * 109.47109 * 60.27576 * 9 7 2 27 27 H 1.09000 * 113.47773 * 336.06705 * 11 10 9 28 28 H 1.09001 * 113.47772 * 106.53303 * 11 10 9 29 29 H 1.09001 * 114.17353 * 139.66875 * 12 11 10 30 30 H 1.08003 * 120.80710 * 0.02693 * 15 14 13 31 31 H 1.08004 * 120.38907 * 179.97438 * 16 15 14 32 32 H 1.08001 * 119.65506 * 180.29084 * 22 21 17 33 33 H 1.08999 * 113.47382 * 253.46890 * 23 10 9 34 34 H 1.09000 * 113.47805 * 23.93477 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0074 10 7 2.2056 -3.6157 0.0132 11 6 2.4755 -4.0875 -1.3577 12 6 2.4190 -5.5226 -0.8155 13 8 3.6657 -6.0146 -0.3200 14 6 4.2816 -6.9812 -1.0504 15 6 3.7657 -7.3713 -2.2823 16 6 4.4282 -8.3610 -2.9899 17 6 5.5715 -8.9239 -2.4537 18 7 6.2849 -9.9822 -3.2032 19 8 5.8642 -10.3514 -4.2849 20 8 7.2926 -10.4840 -2.7381 21 7 6.0343 -8.5313 -1.2833 22 6 5.4367 -7.5890 -0.5809 23 6 1.5183 -4.8973 0.2590 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5522 0.8976 26 1 0.6243 -2.5616 -0.8823 27 1 1.6755 -3.8575 -2.0615 28 1 3.4596 -3.8022 -1.7293 29 1 1.9079 -6.2277 -1.4711 30 1 2.8707 -6.9138 -2.6771 31 1 4.0560 -8.6890 -3.9493 32 1 5.8482 -7.2906 0.3720 33 1 1.6914 -5.2982 1.2577 34 1 0.4630 -4.8833 -0.0132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226711228.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:43 Heat of formation + Delta-G solvation = 31.559194 kcal Electronic energy + Delta-G solvation = -20534.702778 eV Core-core repulsion = 17051.768030 eV Total energy + Delta-G solvation = -3482.934749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.37589 -42.21761 -40.96769 -38.69095 -37.73452 -35.04983 -33.89085 -32.65965 -31.17419 -28.14601 -27.28305 -26.83841 -25.43734 -24.28650 -23.42663 -21.36861 -20.66162 -19.97154 -19.27327 -18.77798 -18.56280 -18.03072 -17.18050 -16.76443 -16.50593 -16.19894 -15.76883 -15.44912 -15.09296 -14.86220 -14.63029 -14.05976 -13.91104 -13.52254 -12.96429 -12.86974 -12.82301 -12.49494 -12.37500 -12.33911 -12.32774 -11.77007 -11.58827 -11.36923 -11.33201 -11.23593 -10.63676 -10.04776 -9.61669 -8.25503 -6.34713 -1.38493 -0.34836 0.05111 0.10281 1.38508 1.40000 1.51247 1.57530 2.12141 2.37339 2.88504 3.04171 3.07419 3.15963 3.21738 3.31422 3.47806 3.76139 4.07814 4.24932 4.32104 4.44747 4.53723 4.59958 4.63880 4.67321 4.82489 4.92813 5.02874 5.15370 5.56080 5.76820 5.78921 6.01768 6.07246 6.41678 6.56056 6.79721 7.35214 8.85034 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038672 B = 0.002902 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.865203 B = 9647.188829 C = 9811.870337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.171 3.829 10 N -0.490 5.490 11 C -0.010 4.010 12 C 0.061 3.939 13 O -0.267 6.267 14 C 0.144 3.856 15 C -0.156 4.156 16 C -0.034 4.034 17 C 0.091 3.909 18 N 0.036 4.964 19 O -0.141 6.141 20 O -0.185 6.185 21 N -0.421 5.421 22 C 0.097 3.903 23 C -0.001 4.001 24 H 0.265 0.735 25 H 0.004 0.996 26 H -0.008 1.008 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.200 0.800 31 H 0.194 0.806 32 H 0.205 0.795 33 H 0.092 0.908 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.823 -16.122 -5.771 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.044 3.956 10 N -0.213 5.213 11 C -0.140 4.140 12 C 0.005 3.995 13 O -0.175 6.175 14 C 0.093 3.907 15 C -0.182 4.182 16 C -0.056 4.056 17 C -0.123 4.123 18 N 0.554 4.446 19 O -0.360 6.360 20 O -0.395 6.395 21 N -0.134 5.134 22 C -0.068 4.068 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.022 0.978 26 H 0.010 0.990 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.161 0.839 30 H 0.217 0.783 31 H 0.212 0.788 32 H 0.222 0.778 33 H 0.111 0.889 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.696 -15.565 -4.467 16.860 hybrid contribution -0.961 1.044 -0.843 1.651 sum 3.735 -14.521 -5.310 15.906 Atomic orbital electron populations 1.70039 1.07449 1.27978 1.51669 1.25831 0.95746 1.02952 0.94794 0.85465 0.78537 0.78646 0.78498 1.19669 1.20649 1.19420 1.21422 0.93446 0.91503 1.50180 0.92750 1.19965 0.90626 0.90216 0.94753 1.69032 1.33212 1.02173 1.16905 1.24339 1.03200 0.93286 0.93140 1.23823 0.82639 0.95193 0.97811 1.86291 1.35424 1.48517 1.47317 1.20672 0.92413 0.86824 0.90822 1.22195 1.03674 0.98737 0.93600 1.21877 0.89669 0.92092 1.01952 1.21512 0.97056 0.98432 0.95320 1.43570 1.00213 1.00454 1.00406 1.94496 1.69832 1.64404 1.07282 1.94586 1.14621 1.58106 1.72137 1.66405 1.31032 1.11372 1.04597 1.22471 0.91900 0.91443 1.00967 1.24109 0.97401 0.90718 1.00767 0.92572 0.97831 0.99002 0.89271 0.90284 0.83916 0.78270 0.78847 0.77834 0.88949 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.51 13.29 21.45 0.28 -53.23 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.53 -28.88 9.39 25.60 0.24 -28.64 16 8 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 9 C 0.17 8.31 4.57 85.56 0.39 8.70 16 10 N -0.49 -18.61 6.32 -932.96 -5.89 -24.50 16 11 C -0.01 -0.29 7.56 83.57 0.63 0.34 16 12 C 0.06 1.20 4.10 30.94 0.13 1.33 16 13 O -0.27 -5.52 10.20 -92.53 -0.94 -6.46 16 14 C 0.14 2.38 6.70 22.60 0.15 2.53 16 15 C -0.16 -1.83 9.12 22.56 0.21 -1.63 16 16 C -0.03 -0.47 9.59 22.34 0.21 -0.26 16 17 C 0.09 1.98 7.77 129.66 1.01 2.99 16 18 N 0.04 0.94 4.45 -49.90 -0.22 0.72 16 19 O -0.14 -3.40 18.42 18.89 0.35 -3.05 16 20 O -0.18 -5.56 19.02 18.88 0.36 -5.20 16 21 N -0.42 -9.69 10.04 -186.08 -1.87 -11.55 16 22 C 0.10 1.76 11.14 84.80 0.94 2.70 16 23 C 0.00 -0.03 7.52 83.57 0.63 0.60 16 24 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 25 H 0.00 0.19 8.08 -2.39 -0.02 0.17 16 26 H -0.01 -0.39 7.30 -2.39 -0.02 -0.40 16 27 H 0.09 2.43 7.42 -2.39 -0.02 2.42 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.14 1.43 5.93 -2.39 -0.01 1.42 16 30 H 0.20 1.04 6.01 -2.91 -0.02 1.02 16 31 H 0.19 1.57 7.60 -2.91 -0.02 1.55 16 32 H 0.21 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.10 2.36 7.91 -2.39 -0.02 2.34 16 Total: -1.00 -70.01 306.22 0.23 -69.78 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: 1.14 Total: -0.98 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 5.00 Total: -10.58 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -7.70 Total: -88.56 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.24 Total: -14.72 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -70.01 0.23 -69.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226711228.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.336 kcal (2) G-P(sol) polarization free energy of solvation -70.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds