Wall clock time and date at job start Tue Mar 31 2020 00:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00472 * 2 1 4 4 C 1.50701 * 109.46684 * 66.04948 * 3 2 1 5 5 H 1.08000 * 120.00460 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99862 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99983 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99956 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47039 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47255 * 120.00060 * 8 6 4 11 11 H 1.48500 * 109.47169 * 239.99929 * 8 6 4 12 12 C 1.46908 * 110.99389 * 236.04981 * 2 1 3 13 13 C 1.50700 * 109.47028 * 293.94943 * 12 2 1 14 14 C 1.35073 * 125.67432 * 95.00817 * 13 12 2 15 15 N 1.36922 * 107.17188 * 180.02562 * 14 13 12 16 16 C 1.37091 * 106.99046 * 359.97438 * 15 14 13 17 17 C 1.40905 * 119.64488 * 179.97438 * 16 15 14 18 18 C 1.36063 * 119.35638 * 0.02562 * 17 16 15 19 19 C 1.40381 * 119.70744 * 0.09114 * 18 17 16 20 20 C 1.35162 * 120.27751 * 359.84806 * 19 18 17 21 21 Cl 1.73610 * 119.70898 * 180.09699 * 20 19 18 22 22 N 1.32571 * 108.02961 * 0.02562 * 16 15 14 23 23 H 1.09002 * 109.47263 * 183.95580 * 1 2 3 24 24 H 1.09006 * 109.46553 * 303.94770 * 1 2 3 25 25 H 1.08994 * 109.47451 * 63.94544 * 1 2 3 26 26 H 1.09000 * 109.47450 * 186.04893 * 3 2 1 27 27 H 1.08994 * 109.47338 * 306.05520 * 3 2 1 28 28 H 0.97006 * 119.99860 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.46844 * 173.95472 * 12 2 1 30 30 H 1.08996 * 109.47370 * 53.95704 * 12 2 1 31 31 H 1.07996 * 126.42091 * 0.02932 * 14 13 12 32 32 H 1.08008 * 120.32406 * 179.72228 * 17 16 15 33 33 H 1.08001 * 120.14392 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.86297 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6371 2.0469 1.2985 5 1 1.0741 1.5113 2.0486 6 6 2.0279 3.3489 1.5291 7 7 2.7131 4.0013 0.6156 8 14 1.5843 4.1862 3.1389 9 1 0.8170 3.2435 3.9921 10 1 2.8263 4.5926 3.8443 11 1 0.7574 5.3878 2.8605 12 6 1.9953 -0.7660 -1.1377 13 6 1.6368 -2.2204 -0.9730 14 6 0.5612 -2.8328 -1.5139 15 7 0.6038 -4.1443 -1.1232 16 6 1.7218 -4.2942 -0.3442 17 6 2.0245 -5.5560 0.2051 18 6 1.2003 -6.6086 -0.0476 19 6 0.0639 -6.4251 -0.8511 20 6 -0.2145 -5.2086 -1.3702 21 17 -1.6252 -4.9978 -2.3599 22 7 2.3294 -3.1184 -0.2678 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3633 0.5739 0.8526 25 1 -0.3634 0.4513 -0.9232 26 1 3.0798 1.3443 -0.1083 27 1 1.5612 1.9273 -0.8308 28 1 2.9877 4.9175 0.7777 29 1 3.0797 -0.6611 -1.1758 30 1 1.5610 -0.3872 -2.0629 31 1 -0.1914 -2.3739 -2.1379 32 1 2.9050 -5.6875 0.8168 33 1 1.4204 -7.5815 0.3666 34 1 -0.5919 -7.2591 -1.0536 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233551819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:29 Heat of formation + Delta-G solvation = 72.586239 kcal Electronic energy + Delta-G solvation = -18713.576184 eV Core-core repulsion = 15673.129667 eV Total energy + Delta-G solvation = -3040.446518 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.88865 -39.16091 -38.13995 -37.46830 -34.78086 -34.51645 -31.88083 -30.14397 -29.07962 -28.37834 -25.96543 -24.17426 -23.86164 -22.66153 -21.29137 -19.06540 -18.52291 -17.96630 -17.32792 -16.89401 -16.65418 -16.23687 -15.88427 -15.65041 -15.23909 -15.11540 -14.04770 -13.91556 -13.67085 -13.48695 -13.30296 -13.10662 -12.91194 -12.66694 -12.59649 -12.43586 -12.32508 -12.19619 -11.96767 -11.88786 -11.33934 -11.10637 -10.62128 -9.81361 -9.03636 -8.87990 -8.20083 -6.30035 -0.42345 0.20473 0.37069 1.40485 1.41869 1.51050 1.55429 1.66427 2.40188 2.44672 3.12162 3.13311 3.37012 3.54129 3.79472 4.04740 4.10986 4.18997 4.35943 4.45385 4.60763 4.63084 4.73819 4.77299 4.95982 5.02880 5.13551 5.16116 5.27464 5.37641 5.48161 5.64596 5.89985 6.03837 6.31489 6.58093 6.82943 6.85315 7.39201 8.91244 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.029626 B = 0.003649 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.885854 B = 7670.797740 C = 7980.290264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.546 5.546 3 C 0.209 3.791 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.275 1.275 12 C 0.133 3.867 13 C 0.071 3.929 14 C -0.089 4.089 15 N -0.367 5.367 16 C 0.214 3.786 17 C -0.091 4.091 18 C -0.073 4.073 19 C -0.106 4.106 20 C 0.100 3.900 21 Cl -0.015 7.015 22 N -0.515 5.515 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.022 0.978 26 H 0.004 0.996 27 H -0.028 1.028 28 H 0.265 0.735 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.196 0.804 32 H 0.171 0.829 33 H 0.199 0.801 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 -25.514 -5.375 27.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.270 5.270 3 C 0.083 3.917 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.200 1.200 12 C 0.005 3.995 13 C -0.062 4.062 14 C -0.220 4.220 15 N -0.043 5.043 16 C -0.029 4.029 17 C -0.111 4.111 18 C -0.096 4.096 19 C -0.127 4.127 20 C -0.030 4.030 21 Cl 0.014 6.986 22 N -0.236 5.236 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.022 0.978 27 H -0.011 1.011 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.213 0.787 32 H 0.188 0.812 33 H 0.216 0.784 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.481 -25.319 -4.692 26.815 hybrid contribution -1.004 1.509 -0.774 1.971 sum -8.485 -23.809 -5.466 25.860 Atomic orbital electron populations 1.22149 0.87458 1.00404 1.00178 1.61920 1.08342 1.15419 1.41359 1.19400 0.93762 0.83083 0.95437 1.21457 1.34919 0.97516 1.02288 0.92290 1.25896 0.94942 0.97926 1.00743 1.70087 1.39277 1.11905 1.36109 0.85320 0.78111 0.78172 0.78912 1.19032 1.20328 1.20043 1.20297 1.00205 0.86430 0.92610 1.20636 0.93187 0.95507 0.96839 1.22528 1.05268 0.82251 1.11944 1.42948 1.19172 1.07937 1.34202 1.21695 0.86203 0.96791 0.98191 1.20799 1.02902 0.86845 1.00562 1.21533 0.91619 1.00594 0.95899 1.21297 0.99987 0.94007 0.97426 1.21474 0.90327 0.88516 1.02677 1.98441 1.35242 1.97514 1.67389 1.70620 1.30632 0.98644 1.23685 0.91928 0.92459 0.95988 0.97786 1.01063 0.92598 0.91144 0.92579 0.78668 0.81193 0.78382 0.78551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.93 9.13 127.69 1.17 3.10 16 2 N -0.55 -26.01 4.74 -931.64 -4.42 -30.43 16 3 C 0.21 11.75 4.72 85.56 0.40 12.16 16 4 C -0.52 -31.07 8.46 25.60 0.22 -30.85 16 5 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 6 C 0.00 0.17 5.46 84.66 0.46 0.63 16 7 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 8 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 C 0.13 5.45 5.50 85.56 0.47 5.92 16 13 C 0.07 2.61 5.81 41.57 0.24 2.85 16 14 C -0.09 -2.69 10.22 83.17 0.85 -1.84 16 15 N -0.37 -9.90 2.95 -341.95 -1.01 -10.91 16 16 C 0.21 6.37 7.81 134.09 1.05 7.42 16 17 C -0.09 -1.75 10.11 22.42 0.23 -1.52 16 18 C -0.07 -0.78 10.06 22.29 0.22 -0.55 16 19 C -0.11 -1.23 9.73 22.08 0.21 -1.02 16 20 C 0.10 1.91 7.24 83.26 0.60 2.51 16 21 Cl -0.01 -0.24 28.66 -2.72 -0.08 -0.32 16 22 N -0.52 -19.70 11.32 -182.42 -2.06 -21.77 16 23 H 0.06 2.34 6.54 -2.39 -0.02 2.32 16 24 H 0.06 2.56 6.76 -2.38 -0.02 2.54 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.00 0.24 7.93 -2.39 -0.02 0.23 16 27 H -0.03 -1.67 8.12 -2.39 -0.02 -1.69 16 28 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 29 H 0.07 3.04 7.93 -2.38 -0.02 3.02 16 30 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 31 H 0.20 5.01 8.06 -2.91 -0.02 4.99 16 32 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.20 0.25 8.06 -2.91 -0.02 0.22 16 34 H 0.20 0.73 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -75.44 307.26 1.97 -73.47 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: 1.11 Total: 0.61 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 6.13 Total: -1.19 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -7.21 Total: -120.25 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -75.44 1.97 -73.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233551819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.056 kcal (2) G-P(sol) polarization free energy of solvation -75.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds