Wall clock time and date at job start Tue Mar 31 2020 01:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47021 * 125.64958 * 359.96780 * 9 7 2 11 11 C 1.54331 * 107.26526 * 178.84865 * 10 9 7 12 12 C 1.55157 * 103.02099 * 338.14342 * 11 10 9 13 13 H 1.09007 * 111.00065 * 277.22946 * 12 11 10 14 14 O 1.42901 * 111.00393 * 153.38646 * 12 11 10 15 15 C 1.35736 * 116.99983 * 156.35370 * 14 12 11 16 16 C 1.39278 * 120.84892 * 359.70974 * 15 14 12 17 17 C 1.37954 * 119.09332 * 179.77872 * 16 15 14 18 18 N 1.31977 * 120.82466 * 0.51509 * 17 16 15 19 19 C 1.31954 * 121.85665 * 359.73512 * 18 17 16 20 20 N 1.48010 * 119.58144 * 179.97438 * 19 18 17 21 21 O 1.21802 * 119.99422 * 180.02562 * 20 19 18 22 22 O 1.21791 * 120.00300 * 0.02562 * 20 19 18 23 23 C 1.37987 * 120.82987 * 0.02562 * 19 18 17 24 24 C 1.47423 * 125.64463 * 180.27811 * 9 7 2 25 25 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.88257 * 298.39786 * 10 9 7 27 27 H 1.09008 * 109.88006 * 59.55999 * 10 9 7 28 28 H 1.09003 * 110.84977 * 219.67319 * 11 10 9 29 29 H 1.08998 * 110.66654 * 96.52690 * 11 10 9 30 30 H 1.07999 * 120.45363 * 0.02891 * 16 15 14 31 31 H 1.08004 * 119.58816 * 180.22810 * 17 16 15 32 32 H 1.07994 * 120.45689 * 180.02562 * 23 19 18 33 33 H 1.09000 * 110.36923 * 322.92896 * 24 9 7 34 34 H 1.08999 * 110.37105 * 85.25804 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1374 -2.5328 0.0140 11 6 -0.4483 -4.0443 -0.0103 12 6 0.8518 -4.6592 -0.5925 13 1 0.8560 -4.6051 -1.6812 14 8 1.0248 -6.0063 -0.1481 15 6 1.7945 -6.8156 -0.9196 16 6 2.3774 -6.3413 -2.0922 17 6 3.1567 -7.1940 -2.8463 18 7 3.3439 -8.4463 -2.4741 19 6 2.8045 -8.9336 -1.3729 20 7 3.0472 -10.3461 -1.0036 21 8 2.5526 -10.8039 0.0110 22 8 3.7415 -11.0507 -1.7141 23 6 2.0161 -8.1431 -0.5620 24 6 1.9336 -3.7310 0.0139 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5501 -2.0818 0.9165 27 1 -0.5616 -2.0547 -0.8691 28 1 -1.2987 -4.2551 -0.6587 29 1 -0.6326 -4.4153 0.9979 30 1 2.2248 -5.3189 -2.4046 31 1 3.6157 -6.8335 -3.7552 32 1 1.5779 -8.5481 0.3382 33 1 2.8328 -3.7437 -0.6020 34 1 2.1670 -4.0365 1.0339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233858621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:48 Heat of formation + Delta-G solvation = 37.761356 kcal Electronic energy + Delta-G solvation = -21045.248691 eV Core-core repulsion = 17562.582889 eV Total energy + Delta-G solvation = -3482.665803 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.42214 -41.05338 -39.07091 -36.80493 -36.64990 -32.81050 -32.44491 -31.80014 -29.51971 -28.04864 -27.03053 -24.85568 -24.19234 -23.06729 -20.97085 -20.43805 -19.79424 -18.94443 -17.93251 -17.80869 -17.39346 -16.61272 -16.24313 -15.61574 -15.21901 -14.82167 -14.48254 -14.21149 -13.82004 -13.40742 -12.91489 -12.52792 -12.26457 -11.79739 -11.78129 -11.46152 -11.28502 -11.15516 -10.99453 -10.85107 -10.60687 -10.38545 -10.23311 -10.21600 -10.11461 -9.94374 -9.27387 -8.82513 -7.11726 -5.93535 -3.29652 -0.50967 0.60459 0.87641 1.06236 2.68140 3.03755 3.27199 3.33441 3.35594 3.82374 4.00710 4.21172 4.32291 4.37782 4.73774 4.80271 4.98757 5.03714 5.24647 5.32451 5.38009 5.45866 5.57216 5.87643 6.04286 6.11694 6.12131 6.24004 6.30127 6.89280 6.98003 7.30068 7.31033 7.55636 7.58552 7.99614 8.97467 9.56900 10.18725 11.18128 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038241 B = 0.003427 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.018629 B = 8169.187301 C = 8532.525656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.003 4.003 3 Si 0.916 3.084 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.135 4.135 12 C 0.056 3.944 13 H 0.089 0.911 14 O -0.285 6.285 15 C 0.194 3.806 16 C -0.219 4.219 17 C 0.158 3.842 18 N -0.465 5.465 19 C 0.203 3.797 20 N 0.028 4.972 21 O -0.153 6.153 22 O -0.118 6.118 23 C -0.139 4.139 24 C 0.120 3.880 25 H 0.255 0.745 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.167 0.833 31 H 0.184 0.816 32 H 0.170 0.830 33 H 0.045 0.955 34 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 -12.586 -4.102 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.200 4.200 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.053 3.947 11 C -0.173 4.173 12 C 0.000 4.000 13 H 0.107 0.893 14 O -0.194 6.194 15 C 0.137 3.863 16 C -0.240 4.240 17 C 0.000 4.000 18 N -0.182 5.182 19 C -0.013 4.013 20 N 0.552 4.448 21 O -0.364 6.364 22 O -0.343 6.343 23 C -0.163 4.163 24 C -0.007 4.007 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.184 0.816 31 H 0.201 0.799 32 H 0.188 0.812 33 H 0.063 0.937 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.954 -12.206 -4.504 13.157 hybrid contribution 0.031 1.214 0.454 1.296 sum 1.985 -10.993 -4.050 11.882 Atomic orbital electron populations 1.69927 1.04974 1.25422 1.56342 1.24837 0.95785 0.97888 1.01511 0.85995 0.78738 0.83276 0.77413 1.20376 1.21531 1.21520 1.19093 0.90560 0.81927 1.44886 0.90111 1.44340 1.01611 0.99409 1.87499 1.21255 0.84447 0.86885 1.02142 1.23097 0.94112 0.98947 1.01191 1.24260 1.00097 0.76273 0.99408 0.89332 1.86178 1.62289 1.23656 1.47286 1.19025 0.88576 0.89610 0.89061 1.22864 1.00881 1.04253 0.95958 1.22592 0.93255 0.85411 0.98730 1.66514 1.21620 1.16260 1.13834 1.21057 1.00627 0.84404 0.95196 1.43336 0.99246 1.02065 1.00130 1.94572 1.51618 1.75622 1.14631 1.94572 1.33587 1.56687 1.49417 1.20842 1.00701 0.91790 1.02919 1.21907 0.93837 0.86652 0.98264 0.93459 0.92889 0.92724 0.90962 0.90750 0.81563 0.79865 0.81213 0.93678 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.22 10.31 55.49 0.57 -24.65 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 3 Si 0.92 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.13 10.28 -15.06 -0.15 -6.29 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -13.96 3.39 -170.06 -0.58 -14.53 16 10 C 0.18 3.86 5.38 -3.06 -0.02 3.84 16 11 C -0.14 -2.20 6.68 -24.89 -0.17 -2.37 16 12 C 0.06 0.83 2.93 -24.58 -0.07 0.76 16 13 H 0.09 1.18 6.02 -51.92 -0.31 0.87 16 14 O -0.29 -3.91 9.96 -18.92 -0.19 -4.10 16 15 C 0.19 2.32 6.74 -38.82 -0.26 2.06 16 16 C -0.22 -2.24 9.09 -39.30 -0.36 -2.59 16 17 C 0.16 1.52 11.17 -17.59 -0.20 1.32 16 18 N -0.46 -5.82 10.04 -10.37 -0.10 -5.92 16 19 C 0.20 2.65 7.76 -146.21 -1.13 1.51 16 20 N 0.03 0.40 4.45 32.85 0.15 0.55 16 21 O -0.15 -2.13 18.42 -29.46 -0.54 -2.67 16 22 O -0.12 -1.76 19.02 -29.46 -0.56 -2.32 16 23 C -0.14 -1.65 9.56 -39.30 -0.38 -2.02 16 24 C 0.12 2.21 6.97 -2.53 -0.02 2.19 16 25 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.05 1.29 7.51 -51.93 -0.39 0.90 16 27 H 0.05 1.30 7.38 -51.92 -0.38 0.92 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.17 1.53 6.02 -52.49 -0.32 1.22 16 31 H 0.18 1.09 8.06 -52.48 -0.42 0.66 16 32 H 0.17 1.80 7.60 -52.49 -0.40 1.40 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -29.27 299.82 -8.07 -37.34 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -3.46 Total: -2.22 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.85 Total: -1.77 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.04 Total: -44.56 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -1.29 Total: -9.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.27 -8.07 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233858621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.101 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds