Wall clock time and date at job start Tue Mar 31 2020 01:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47021 * 125.64958 * 359.96780 * 9 7 2 11 11 C 1.54331 * 107.26526 * 178.84865 * 10 9 7 12 12 C 1.55157 * 103.02099 * 338.14342 * 11 10 9 13 13 H 1.09007 * 111.00065 * 277.22946 * 12 11 10 14 14 O 1.42901 * 111.00393 * 153.38646 * 12 11 10 15 15 C 1.35736 * 116.99983 * 156.35370 * 14 12 11 16 16 C 1.39278 * 120.84892 * 359.70974 * 15 14 12 17 17 C 1.37954 * 119.09332 * 179.77872 * 16 15 14 18 18 N 1.31977 * 120.82466 * 0.51509 * 17 16 15 19 19 C 1.31954 * 121.85665 * 359.73512 * 18 17 16 20 20 N 1.48010 * 119.58144 * 179.97438 * 19 18 17 21 21 O 1.21802 * 119.99422 * 180.02562 * 20 19 18 22 22 O 1.21791 * 120.00300 * 0.02562 * 20 19 18 23 23 C 1.37987 * 120.82987 * 0.02562 * 19 18 17 24 24 C 1.47423 * 125.64463 * 180.27811 * 9 7 2 25 25 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.88257 * 298.39786 * 10 9 7 27 27 H 1.09008 * 109.88006 * 59.55999 * 10 9 7 28 28 H 1.09003 * 110.84977 * 219.67319 * 11 10 9 29 29 H 1.08998 * 110.66654 * 96.52690 * 11 10 9 30 30 H 1.07999 * 120.45363 * 0.02891 * 16 15 14 31 31 H 1.08004 * 119.58816 * 180.22810 * 17 16 15 32 32 H 1.07994 * 120.45689 * 180.02562 * 23 19 18 33 33 H 1.09000 * 110.36923 * 322.92896 * 24 9 7 34 34 H 1.08999 * 110.37105 * 85.25804 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1374 -2.5328 0.0140 11 6 -0.4483 -4.0443 -0.0103 12 6 0.8518 -4.6592 -0.5925 13 1 0.8560 -4.6051 -1.6812 14 8 1.0248 -6.0063 -0.1481 15 6 1.7945 -6.8156 -0.9196 16 6 2.3774 -6.3413 -2.0922 17 6 3.1567 -7.1940 -2.8463 18 7 3.3439 -8.4463 -2.4741 19 6 2.8045 -8.9336 -1.3729 20 7 3.0472 -10.3461 -1.0036 21 8 2.5526 -10.8039 0.0110 22 8 3.7415 -11.0507 -1.7141 23 6 2.0161 -8.1431 -0.5620 24 6 1.9336 -3.7310 0.0139 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5501 -2.0818 0.9165 27 1 -0.5616 -2.0547 -0.8691 28 1 -1.2987 -4.2551 -0.6587 29 1 -0.6326 -4.4153 0.9979 30 1 2.2248 -5.3189 -2.4046 31 1 3.6157 -6.8335 -3.7552 32 1 1.5779 -8.5481 0.3382 33 1 2.8328 -3.7437 -0.6020 34 1 2.1670 -4.0365 1.0339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233858621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:47 Heat of formation + Delta-G solvation = 21.136036 kcal Electronic energy + Delta-G solvation = -21045.969619 eV Core-core repulsion = 17562.582889 eV Total energy + Delta-G solvation = -3483.386731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.45456 -42.03519 -40.18991 -38.19217 -37.79760 -34.46223 -33.37380 -32.91689 -31.15969 -29.41062 -28.18241 -26.58893 -25.06609 -24.18435 -22.29735 -22.01790 -20.85247 -20.00840 -19.08448 -18.91593 -18.85451 -17.72035 -17.22736 -16.81146 -16.62705 -16.12369 -15.87819 -15.27804 -14.99402 -14.76108 -14.34346 -13.94869 -13.81328 -13.10368 -12.95529 -12.87384 -12.75838 -12.50803 -12.38900 -12.20566 -12.11817 -12.00173 -11.78906 -11.60404 -11.27738 -10.98873 -10.76072 -10.29208 -8.99283 -7.90407 -5.27457 -1.50247 -0.25708 -0.10342 0.06305 1.47027 1.47946 1.57056 1.62385 2.16770 2.46874 2.96631 3.15154 3.28463 3.30811 3.45390 3.57614 3.64265 3.80743 3.87465 4.05832 4.23302 4.50762 4.54201 4.63266 4.76747 4.78625 4.88819 4.94739 5.12069 5.41658 5.56099 5.68892 5.90397 5.98937 6.13986 6.51883 7.04127 7.68970 8.30373 9.19811 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038241 B = 0.003427 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.018629 B = 8169.187301 C = 8532.525656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.059 4.059 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.295 1.295 7 C -0.245 4.245 8 H 0.086 0.914 9 N -0.622 5.622 10 C 0.183 3.817 11 C -0.123 4.123 12 C 0.077 3.923 13 H 0.113 0.887 14 O -0.289 6.289 15 C 0.179 3.821 16 C -0.204 4.204 17 C 0.168 3.832 18 N -0.483 5.483 19 C 0.187 3.813 20 N 0.028 4.972 21 O -0.148 6.148 22 O -0.148 6.148 23 C -0.131 4.131 24 C 0.115 3.885 25 H 0.249 0.751 26 H 0.013 0.987 27 H 0.027 0.973 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.183 0.817 31 H 0.224 0.776 32 H 0.178 0.822 33 H 0.061 0.939 34 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.549 -13.019 -5.166 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.223 1.223 7 C -0.373 4.373 8 H 0.103 0.897 9 N -0.350 5.350 10 C 0.059 3.941 11 C -0.162 4.162 12 C 0.020 3.980 13 H 0.131 0.869 14 O -0.199 6.199 15 C 0.124 3.876 16 C -0.224 4.224 17 C 0.010 3.990 18 N -0.200 5.200 19 C -0.027 4.027 20 N 0.549 4.451 21 O -0.363 6.363 22 O -0.366 6.366 23 C -0.155 4.155 24 C -0.011 4.011 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.201 0.799 31 H 0.240 0.760 32 H 0.196 0.804 33 H 0.079 0.921 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.762 -12.711 -5.604 14.164 hybrid contribution -0.175 1.324 0.812 1.563 sum 2.587 -11.387 -4.792 12.622 Atomic orbital electron populations 1.70129 1.06214 1.25485 1.57810 1.25610 0.96586 1.00916 1.02188 0.85040 0.78265 0.79496 0.76678 1.18976 1.21706 1.22263 1.19459 0.91100 0.83251 1.43536 0.89654 1.44596 1.02453 1.00645 1.87328 1.20981 0.83788 0.90426 0.98953 1.22895 0.95898 0.94892 1.02474 1.23880 0.97391 0.76438 1.00248 0.86909 1.86152 1.63056 1.22839 1.47817 1.19104 0.89287 0.89426 0.89820 1.23088 0.99595 1.04921 0.94823 1.23258 0.92267 0.84042 0.99435 1.66544 1.22020 1.17644 1.13824 1.21029 1.01902 0.83701 0.96117 1.43566 0.98903 1.02729 0.99917 1.94547 1.51123 1.76103 1.14560 1.94567 1.34717 1.57472 1.49855 1.20873 0.99989 0.91707 1.02885 1.22048 0.95402 0.85150 0.98454 0.94184 0.96831 0.95436 0.88229 0.90322 0.79950 0.75969 0.80413 0.92126 0.95709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.24 10.31 21.65 0.22 -53.01 16 2 C -0.06 -3.15 5.49 84.86 0.47 -2.69 16 3 Si 0.98 42.90 29.55 68.60 2.03 44.92 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.24 -12.61 10.28 84.03 0.86 -11.74 16 8 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.62 -28.65 3.39 -691.96 -2.35 -31.00 16 10 C 0.18 8.04 5.38 86.73 0.47 8.50 16 11 C -0.12 -3.79 6.68 31.79 0.21 -3.58 16 12 C 0.08 2.06 2.93 31.99 0.09 2.16 16 13 H 0.11 2.53 6.02 -2.38 -0.01 2.52 16 14 O -0.29 -7.02 9.96 -90.60 -0.90 -7.93 16 15 C 0.18 3.73 6.74 22.76 0.15 3.88 16 16 C -0.20 -3.34 9.09 22.45 0.20 -3.14 16 17 C 0.17 2.57 11.17 84.60 0.95 3.51 16 18 N -0.48 -10.89 10.04 -186.71 -1.88 -12.77 16 19 C 0.19 4.56 7.76 129.56 1.01 5.56 16 20 N 0.03 0.77 4.45 -50.00 -0.22 0.54 16 21 O -0.15 -4.00 18.42 18.88 0.35 -3.66 16 22 O -0.15 -4.39 19.02 18.90 0.36 -4.03 16 23 C -0.13 -2.80 9.56 22.45 0.21 -2.59 16 24 C 0.12 4.00 6.97 86.86 0.61 4.60 16 25 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 26 H 0.01 0.68 7.51 -2.39 -0.02 0.67 16 27 H 0.03 1.34 7.38 -2.38 -0.02 1.32 16 28 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.18 2.46 6.02 -2.91 -0.02 2.44 16 31 H 0.22 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.18 3.43 7.60 -2.91 -0.02 3.41 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -64.60 299.82 3.98 -60.63 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 1.14 Total: 1.81 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.23 Total: 4.49 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -4.22 Total: -96.24 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.20 Total: -15.61 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -64.60 3.98 -60.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233858621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.762 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds