Wall clock time and date at job start Tue Mar 31 2020 00:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99762 * 2 1 4 4 C 1.50692 * 109.47553 * 66.04471 * 3 2 1 5 5 H 1.08001 * 120.00176 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00262 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00303 * 180.02562 * 6 4 3 8 8 Si 1.86795 * 119.99764 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.47074 * 90.00381 * 8 6 4 10 10 H 1.48502 * 109.47071 * 210.00270 * 8 6 4 11 11 H 1.48497 * 109.47436 * 330.00551 * 8 6 4 12 12 C 1.46895 * 111.00296 * 236.04460 * 2 1 3 13 13 C 1.50703 * 109.46879 * 293.95041 * 12 2 1 14 14 C 1.34647 * 126.51715 * 270.02194 * 13 12 2 15 15 Cl 1.73594 * 125.03005 * 359.97438 * 14 13 12 16 16 N 1.36686 * 109.93870 * 179.97438 * 14 13 12 17 17 H 0.97002 * 125.05845 * 180.02562 * 16 14 13 18 18 C 1.37638 * 109.89071 * 0.02562 * 16 14 13 19 19 C 1.38811 * 134.45127 * 179.97438 * 18 16 14 20 20 N 1.31771 * 120.28050 * 179.97438 * 19 18 16 21 21 C 1.32295 * 122.57308 * 0.02562 * 20 19 18 22 22 C 1.36632 * 121.31694 * 0.22488 * 21 20 19 23 23 C 1.39851 * 118.69299 * 359.53455 * 22 21 20 24 24 H 1.09002 * 109.47093 * 183.95921 * 1 2 3 25 25 H 1.09004 * 109.47632 * 303.95689 * 1 2 3 26 26 H 1.08998 * 109.47244 * 63.95677 * 1 2 3 27 27 H 1.08999 * 109.47318 * 186.04664 * 3 2 1 28 28 H 1.09005 * 109.46659 * 306.04220 * 3 2 1 29 29 H 0.97000 * 120.00472 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47224 * 173.95393 * 12 2 1 31 31 H 1.08998 * 109.47166 * 53.94927 * 12 2 1 32 32 H 1.07998 * 119.85589 * 0.02562 * 19 18 16 33 33 H 1.08010 * 119.34057 * 180.02562 * 21 20 19 34 34 H 1.07998 * 120.65388 * 179.69497 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0739 1.5117 2.0484 6 6 2.0267 3.3496 1.5283 7 7 1.7142 3.9392 2.6616 8 14 2.9998 4.2762 0.2307 9 1 2.0631 4.9798 -0.6819 10 1 3.8862 5.2680 0.8911 11 1 3.8237 3.3176 -0.5486 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2204 -0.9726 14 6 2.3695 -3.1600 -0.3453 15 17 3.9051 -2.8829 0.4154 16 7 1.7250 -4.3643 -0.3960 17 1 2.0574 -5.1908 -0.0121 18 6 0.5341 -4.2299 -1.0728 19 6 -0.4935 -5.0986 -1.4140 20 7 -1.5385 -4.6600 -2.0863 21 6 -1.6637 -3.3986 -2.4650 22 6 -0.7008 -2.4724 -2.1789 23 6 0.4296 -2.8783 -1.4624 24 1 -0.3633 -1.0252 0.0710 25 1 -0.3634 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0796 1.3445 -0.1082 28 1 1.5610 1.9273 -0.8310 29 1 1.9888 4.8553 2.8236 30 1 3.0797 -0.6611 -1.1755 31 1 1.5611 -0.3873 -2.0627 32 1 -0.4366 -6.1380 -1.1264 33 1 -2.5431 -3.0956 -3.0140 34 1 -0.8117 -1.4464 -2.4975 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237452606.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:14 Heat of formation + Delta-G solvation = 73.517421 kcal Electronic energy + Delta-G solvation = -19092.615735 eV Core-core repulsion = 16052.209596 eV Total energy + Delta-G solvation = -3040.406139 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72358 -38.31064 -36.70725 -36.63517 -32.98339 -32.15428 -30.32887 -29.97917 -27.82875 -26.48376 -23.81575 -23.48721 -22.62700 -20.50207 -19.42975 -18.38367 -17.15582 -16.75801 -15.94349 -15.42110 -15.12221 -14.70048 -14.46393 -14.21223 -14.03249 -13.42184 -13.19961 -13.05159 -12.37519 -12.10203 -11.86979 -11.64785 -11.56953 -11.28979 -11.19628 -10.90419 -10.68722 -10.23745 -10.07548 -9.80945 -9.68064 -9.27679 -8.63081 -8.56323 -7.95439 -7.34566 -6.03449 -4.00469 0.79467 1.33780 1.51646 2.38447 3.07013 3.28923 3.36823 3.38484 3.82044 4.37056 4.43212 4.55121 4.68201 4.86343 4.96064 5.05845 5.29669 5.39789 5.56336 5.57102 5.87991 5.93374 6.08436 6.17970 6.25672 6.37403 6.41239 6.71795 6.75554 6.86382 7.00644 7.07373 7.60952 7.91656 7.93364 8.05623 8.67726 9.05830 9.58250 11.09766 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.021054 B = 0.005096 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.600260 B = 5493.082596 C = 6336.574229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.522 5.522 3 C 0.162 3.838 4 C -0.506 4.506 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.119 3.881 13 C -0.117 4.117 14 C 0.141 3.859 15 Cl 0.002 6.998 16 N -0.578 5.578 17 H 0.420 0.580 18 C 0.050 3.950 19 C 0.112 3.888 20 N -0.467 5.467 21 C 0.052 3.948 22 C -0.110 4.110 23 C -0.060 4.060 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.010 0.990 27 H 0.029 0.971 28 H -0.016 1.016 29 H 0.263 0.737 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 -17.518 -9.681 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.246 5.246 3 C 0.036 3.964 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.191 1.191 12 C -0.010 4.010 13 C -0.126 4.126 14 C 0.005 3.995 15 Cl 0.031 6.969 16 N -0.186 5.186 17 H 0.258 0.742 18 C -0.060 4.060 19 C -0.056 4.056 20 N -0.175 5.175 21 C -0.098 4.098 22 C -0.130 4.130 23 C -0.072 4.072 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.029 0.971 27 H 0.047 0.953 28 H 0.002 0.998 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.171 0.829 33 H 0.173 0.827 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.557 -18.132 -9.279 20.376 hybrid contribution 1.294 1.227 -0.731 1.927 sum 0.737 -16.905 -10.010 19.661 Atomic orbital electron populations 1.22285 0.88205 1.00031 1.00565 1.61986 1.07500 1.16062 1.39022 1.20207 0.95241 0.83886 0.97084 1.21021 1.35422 0.97113 1.00904 0.90129 1.24887 0.95781 0.97344 0.95288 1.69891 1.46992 1.13226 1.23921 0.86884 0.80677 0.80092 0.82219 1.20369 1.21200 1.19131 1.20453 1.00278 0.87008 0.93238 1.19994 0.93259 0.95505 1.03838 1.20631 0.90424 0.86382 1.02104 1.98434 1.23719 1.95051 1.79713 1.41482 1.17072 1.09799 1.50214 0.74158 1.19224 0.89383 0.96953 1.00448 1.21759 0.87866 0.98645 0.97330 1.67582 1.21862 1.17584 1.10504 1.22044 0.99143 0.88210 1.00364 1.21303 0.92625 1.01307 0.97751 1.19141 0.95479 0.92172 1.00418 0.93290 0.90328 0.97138 0.95319 0.99825 0.92702 0.90129 0.94543 0.82901 0.82730 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.05 60.06 0.54 1.27 16 2 N -0.52 -10.83 4.74 -245.83 -1.17 -12.00 16 3 C 0.16 3.88 3.79 -4.98 -0.02 3.86 16 4 C -0.51 -14.30 9.01 -34.44 -0.31 -14.61 16 5 H 0.08 2.49 7.37 -52.49 -0.39 2.10 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 8 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 12 C 0.12 2.03 5.29 -4.98 -0.03 2.00 16 13 C -0.12 -1.79 5.10 -102.80 -0.52 -2.31 16 14 C 0.14 1.92 7.69 -16.66 -0.13 1.79 16 15 Cl 0.00 0.03 28.78 -51.86 -1.49 -1.46 16 16 N -0.58 -6.36 6.06 -7.81 -0.05 -6.40 16 17 H 0.42 3.17 8.96 -40.82 -0.37 2.80 16 18 C 0.05 0.61 7.33 -83.98 -0.62 -0.01 16 19 C 0.11 1.25 11.25 -17.37 -0.20 1.05 16 20 N -0.47 -5.82 10.32 -13.41 -0.14 -5.96 16 21 C 0.05 0.61 11.11 -17.93 -0.20 0.41 16 22 C -0.11 -1.39 9.53 -39.56 -0.38 -1.77 16 23 C -0.06 -0.85 5.36 -105.13 -0.56 -1.41 16 24 H 0.05 0.88 5.93 -51.93 -0.31 0.57 16 25 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.03 0.69 6.99 -51.93 -0.36 0.33 16 28 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.08 1.35 7.64 -51.93 -0.40 0.95 16 31 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 301.98 15.07 4.55 4.55 Total: -1.00 -31.97 301.98 -8.54 -40.52 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -3.84 Total: -1.28 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.51 Total: -7.85 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.58 Total: -51.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.49 Total: -1.46 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.97 -8.54 -40.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237452606.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.035 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds