Wall clock time and date at job start Tue Mar 31 2020 00:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99824 * 2 1 4 4 C 1.50701 * 109.47282 * 66.04585 * 3 2 1 5 5 H 1.07997 * 119.99686 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00029 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99891 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99950 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47224 * 89.99949 * 8 6 4 10 10 H 1.48494 * 109.47247 * 210.00243 * 8 6 4 11 11 H 1.48506 * 109.46866 * 330.00197 * 8 6 4 12 12 C 1.46901 * 110.99866 * 236.04475 * 2 1 3 13 13 C 1.50696 * 109.47190 * 293.95496 * 12 2 1 14 14 N 1.30230 * 126.10283 * 269.95850 * 13 12 2 15 15 N 1.39874 * 110.08713 * 180.02562 * 14 13 12 16 16 H 0.97003 * 125.46444 * 179.97438 * 15 14 13 17 17 C 1.37044 * 109.07292 * 359.97438 * 15 14 13 18 18 C 1.39288 * 133.80610 * 179.97438 * 17 15 14 19 19 C 1.37688 * 119.72969 * 180.02562 * 18 17 15 20 20 Cl 1.73601 * 119.68056 * 179.97438 * 19 18 17 21 21 C 1.39098 * 120.63764 * 359.95917 * 19 18 17 22 22 C 1.36415 * 120.62457 * 0.02562 * 21 19 18 23 23 C 1.39931 * 119.79459 * 359.97438 * 22 21 19 24 24 H 1.08998 * 109.47138 * 183.95360 * 1 2 3 25 25 H 1.08994 * 109.47057 * 303.95602 * 1 2 3 26 26 H 1.09001 * 109.46887 * 63.95640 * 1 2 3 27 27 H 1.09001 * 109.47043 * 186.04297 * 3 2 1 28 28 H 1.08996 * 109.47592 * 306.04231 * 3 2 1 29 29 H 0.97000 * 119.99911 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46694 * 173.95613 * 12 2 1 31 31 H 1.09004 * 109.46822 * 53.95698 * 12 2 1 32 32 H 1.07999 * 120.13438 * 0.02562 * 18 17 15 33 33 H 1.08001 * 119.68678 * 180.29710 * 21 19 18 34 34 H 1.08001 * 120.10021 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5115 2.0484 6 6 2.0276 3.3492 1.5289 7 7 2.7136 4.0012 0.6158 8 14 1.5838 4.1865 3.1386 9 1 2.6607 3.9494 4.1333 10 1 1.4320 5.6461 2.9119 11 1 0.3059 3.6294 3.6504 12 6 1.9955 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9728 14 7 2.3524 -3.1231 -0.3652 15 7 1.7034 -4.3613 -0.4108 16 1 2.0387 -5.1869 -0.0275 17 6 0.5179 -4.2210 -1.0839 18 6 -0.5088 -5.0995 -1.4218 19 6 -1.5997 -4.6374 -2.1234 20 17 -2.8782 -5.7336 -2.5445 21 6 -1.6873 -3.3006 -2.4977 22 6 -0.6937 -2.4226 -2.1771 23 6 0.4250 -2.8685 -1.4645 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3444 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 2.9882 4.9173 0.7777 30 1 3.0797 -0.6611 -1.1755 31 1 1.5611 -0.3872 -2.0628 32 1 -0.4494 -6.1390 -1.1347 33 1 -2.5522 -2.9536 -3.0435 34 1 -0.7707 -1.3864 -2.4716 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237992135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:10 Heat of formation + Delta-G solvation = 82.011022 kcal Electronic energy + Delta-G solvation = -18739.990538 eV Core-core repulsion = 15699.952709 eV Total energy + Delta-G solvation = -3040.037829 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35284 -37.77037 -36.64635 -36.21758 -33.02455 -32.11641 -30.01080 -29.66419 -27.51987 -26.79474 -24.06099 -23.26372 -22.32448 -20.89085 -19.40475 -18.06494 -17.02929 -16.34857 -15.90088 -15.33786 -14.88530 -14.62261 -14.27381 -14.03184 -13.85422 -13.73380 -13.05871 -12.62373 -12.27312 -11.96808 -11.79699 -11.48182 -11.28020 -11.17663 -11.16738 -10.89549 -10.74248 -10.53343 -10.47654 -10.13526 -9.87180 -9.26382 -8.62271 -8.44507 -8.13882 -7.32150 -6.03696 -4.04731 0.67322 1.27804 1.80500 2.43411 2.73554 3.32813 3.38733 3.42316 3.51988 4.41045 4.43428 4.50693 4.63005 4.87052 5.08985 5.12545 5.30324 5.32963 5.49340 5.59756 5.89950 5.90778 6.01034 6.15907 6.18160 6.30005 6.35287 6.57669 6.73500 7.20721 7.23497 7.28258 7.66053 7.76852 8.03385 8.14128 8.49322 9.02394 9.59376 11.07207 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.029880 B = 0.003598 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.845057 B = 7779.772850 C = 8183.229590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.532 5.532 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.126 3.874 13 C 0.132 3.868 14 N -0.230 5.230 15 N -0.512 5.512 16 H 0.439 0.561 17 C 0.137 3.863 18 C -0.139 4.139 19 C 0.014 3.986 20 Cl -0.069 7.069 21 C -0.157 4.157 22 C -0.018 4.018 23 C -0.166 4.166 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.014 0.986 27 H 0.033 0.967 28 H -0.005 1.005 29 H 0.261 0.739 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 -17.769 -7.621 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.258 5.258 3 C 0.069 3.931 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.004 4.004 13 C -0.047 4.047 14 N -0.044 5.044 15 N -0.225 5.225 16 H 0.283 0.717 17 C 0.020 3.980 18 C -0.162 4.162 19 C -0.016 4.016 20 Cl -0.040 7.040 21 C -0.177 4.177 22 C -0.039 4.039 23 C -0.174 4.174 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.013 0.987 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.629 -18.150 -6.601 20.419 hybrid contribution -1.115 0.375 -0.053 1.178 sum -7.745 -17.775 -6.654 20.499 Atomic orbital electron populations 1.22327 0.88582 0.99800 1.00726 1.62104 1.07278 1.17931 1.38447 1.19777 0.95601 0.80791 0.96947 1.21132 1.34891 0.96876 1.01638 0.91835 1.24971 0.95282 0.97311 0.96980 1.69950 1.38313 1.11516 1.34030 0.86493 0.78879 0.78392 0.83618 1.20631 1.21319 1.19866 1.20497 1.01547 0.84321 0.94081 1.23730 0.90414 0.96347 0.94233 1.76719 1.19843 0.89393 1.18407 1.46010 1.15569 1.09996 1.50937 0.71655 1.18545 0.88931 0.94891 0.95610 1.19713 0.92626 0.99418 1.04411 1.20538 0.90188 0.91149 0.99694 1.98370 1.50057 1.63506 1.92066 1.20481 1.01064 0.91107 1.05094 1.20368 0.90402 0.99787 0.93331 1.19952 0.97922 0.92636 1.06887 0.93505 0.90562 0.96759 0.94902 0.98719 0.92894 0.89037 0.93143 0.84797 0.84576 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 8.93 60.07 0.54 1.19 16 2 N -0.53 -11.29 4.74 -245.83 -1.17 -12.46 16 3 C 0.19 4.90 4.72 -4.98 -0.02 4.87 16 4 C -0.51 -14.04 8.46 -34.44 -0.29 -14.33 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.28 13.29 55.43 0.74 -25.55 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.13 2.22 5.56 -4.98 -0.03 2.19 16 13 C 0.13 2.17 6.23 -80.18 -0.50 1.67 16 14 N -0.23 -3.78 12.55 34.84 0.44 -3.34 16 15 N -0.51 -6.63 7.37 32.36 0.24 -6.39 16 16 H 0.44 4.13 8.96 -182.77 -1.64 2.49 16 17 C 0.14 1.78 7.33 -84.17 -0.62 1.16 16 18 C -0.14 -1.50 9.84 -39.39 -0.39 -1.89 16 19 C 0.01 0.15 6.31 -39.46 -0.25 -0.10 16 20 Cl -0.07 -0.65 28.93 -51.86 -1.50 -2.15 16 21 C -0.16 -1.68 9.74 -39.92 -0.39 -2.07 16 22 C -0.02 -0.22 9.27 -39.61 -0.37 -0.59 16 23 C -0.17 -2.37 5.28 -105.20 -0.55 -2.92 16 24 H 0.05 0.81 5.87 -51.93 -0.30 0.51 16 25 H 0.08 1.58 6.76 -51.93 -0.35 1.23 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 28 H 0.00 -0.13 8.12 -51.93 -0.42 -0.55 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.09 1.62 7.93 -51.93 -0.41 1.21 16 31 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 306.32 15.07 4.62 4.62 Total: -1.00 -30.64 306.32 -9.79 -40.43 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.16 Total: -2.28 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.97 Total: -9.36 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.25 Total: -47.74 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.64 -9.79 -40.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237992135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.437 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds