Wall clock time and date at job start Tue Mar 31 2020 00:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99824 * 2 1 4 4 C 1.50701 * 109.47282 * 66.04585 * 3 2 1 5 5 H 1.07997 * 119.99686 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00029 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99891 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99950 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47224 * 89.99949 * 8 6 4 10 10 H 1.48494 * 109.47247 * 210.00243 * 8 6 4 11 11 H 1.48506 * 109.46866 * 330.00197 * 8 6 4 12 12 C 1.46901 * 110.99866 * 236.04475 * 2 1 3 13 13 C 1.50696 * 109.47190 * 293.95496 * 12 2 1 14 14 N 1.30230 * 126.10283 * 269.95850 * 13 12 2 15 15 N 1.39874 * 110.08713 * 180.02562 * 14 13 12 16 16 H 0.97003 * 125.46444 * 179.97438 * 15 14 13 17 17 C 1.37044 * 109.07292 * 359.97438 * 15 14 13 18 18 C 1.39288 * 133.80610 * 179.97438 * 17 15 14 19 19 C 1.37688 * 119.72969 * 180.02562 * 18 17 15 20 20 Cl 1.73601 * 119.68056 * 179.97438 * 19 18 17 21 21 C 1.39098 * 120.63764 * 359.95917 * 19 18 17 22 22 C 1.36415 * 120.62457 * 0.02562 * 21 19 18 23 23 C 1.39931 * 119.79459 * 359.97438 * 22 21 19 24 24 H 1.08998 * 109.47138 * 183.95360 * 1 2 3 25 25 H 1.08994 * 109.47057 * 303.95602 * 1 2 3 26 26 H 1.09001 * 109.46887 * 63.95640 * 1 2 3 27 27 H 1.09001 * 109.47043 * 186.04297 * 3 2 1 28 28 H 1.08996 * 109.47592 * 306.04231 * 3 2 1 29 29 H 0.97000 * 119.99911 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46694 * 173.95613 * 12 2 1 31 31 H 1.09004 * 109.46822 * 53.95698 * 12 2 1 32 32 H 1.07999 * 120.13438 * 0.02562 * 18 17 15 33 33 H 1.08001 * 119.68678 * 180.29710 * 21 19 18 34 34 H 1.08001 * 120.10021 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5115 2.0484 6 6 2.0276 3.3492 1.5289 7 7 2.7136 4.0012 0.6158 8 14 1.5838 4.1865 3.1386 9 1 2.6607 3.9494 4.1333 10 1 1.4320 5.6461 2.9119 11 1 0.3059 3.6294 3.6504 12 6 1.9955 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9728 14 7 2.3524 -3.1231 -0.3652 15 7 1.7034 -4.3613 -0.4108 16 1 2.0387 -5.1869 -0.0275 17 6 0.5179 -4.2210 -1.0839 18 6 -0.5088 -5.0995 -1.4218 19 6 -1.5997 -4.6374 -2.1234 20 17 -2.8782 -5.7336 -2.5445 21 6 -1.6873 -3.3006 -2.4977 22 6 -0.6937 -2.4226 -2.1771 23 6 0.4250 -2.8685 -1.4645 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3444 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 2.9882 4.9173 0.7777 30 1 3.0797 -0.6611 -1.1755 31 1 1.5611 -0.3872 -2.0628 32 1 -0.4494 -6.1390 -1.1347 33 1 -2.5522 -2.9536 -3.0435 34 1 -0.7707 -1.3864 -2.4716 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237992135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:09 Heat of formation + Delta-G solvation = 62.214351 kcal Electronic energy + Delta-G solvation = -18740.848986 eV Core-core repulsion = 15699.952709 eV Total energy + Delta-G solvation = -3040.896277 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.39080 -38.72559 -38.21971 -37.07456 -34.84136 -33.53176 -31.04197 -30.67596 -29.33752 -28.30232 -25.87951 -24.19862 -23.31460 -22.62142 -20.66916 -19.07299 -18.41454 -18.02654 -16.89984 -16.79193 -16.37035 -15.93879 -15.55581 -15.40993 -15.28905 -14.93810 -14.09146 -13.96634 -13.62953 -13.49950 -13.29572 -12.95543 -12.74661 -12.58362 -12.42025 -12.34341 -12.06545 -12.02633 -11.89102 -11.60008 -11.34931 -11.17227 -10.58421 -9.58752 -9.14425 -8.98595 -8.17780 -6.26925 -0.27754 0.36249 0.96753 1.28108 1.43500 1.44668 1.55526 1.76573 2.42827 2.58202 3.15147 3.29242 3.46660 3.55986 3.65074 4.05167 4.21342 4.31455 4.38966 4.52571 4.54989 4.63927 4.74159 4.89854 5.07420 5.10186 5.21601 5.26107 5.30187 5.33999 5.63511 5.66743 6.05848 6.27978 6.34162 6.55834 6.60465 6.88034 7.42152 8.93023 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.029880 B = 0.003598 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.845057 B = 7779.772850 C = 8183.229590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.545 5.545 3 C 0.209 3.791 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.005 3.995 7 N -0.932 5.932 8 Si 0.966 3.034 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.129 3.871 13 C 0.116 3.884 14 N -0.258 5.258 15 N -0.500 5.500 16 H 0.453 0.547 17 C 0.130 3.870 18 C -0.132 4.132 19 C 0.012 3.988 20 Cl -0.053 7.053 21 C -0.148 4.148 22 C -0.029 4.029 23 C -0.184 4.184 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.027 0.973 27 H 0.007 0.993 28 H -0.024 1.024 29 H 0.265 0.735 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.662 -19.193 -7.542 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.270 5.270 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.194 4.194 7 N -0.572 5.572 8 Si 0.791 3.209 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.190 1.190 12 C 0.000 4.000 13 C -0.063 4.063 14 N -0.073 5.073 15 N -0.217 5.217 16 H 0.300 0.700 17 C 0.013 3.987 18 C -0.155 4.155 19 C -0.018 4.018 20 Cl -0.024 7.024 21 C -0.168 4.168 22 C -0.049 4.049 23 C -0.192 4.192 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.026 0.974 28 H -0.006 1.006 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.422 -19.609 -6.527 22.317 hybrid contribution -0.623 0.669 -0.154 0.927 sum -9.045 -18.940 -6.681 22.026 Atomic orbital electron populations 1.22243 0.87181 1.00684 1.00423 1.61949 1.08629 1.15650 1.40811 1.19410 0.93967 0.82896 0.95433 1.21432 1.34864 0.97426 1.02407 0.92232 1.25834 0.95059 0.97995 1.00465 1.70065 1.39238 1.11936 1.35995 0.85432 0.78852 0.77382 0.79245 1.20194 1.20618 1.18968 1.20399 1.00933 0.85231 0.93452 1.23425 0.91821 0.95477 0.95532 1.76592 1.21045 0.90770 1.18912 1.45925 1.15484 1.09512 1.50736 0.69999 1.18744 0.89262 0.94880 0.95807 1.19959 0.91718 1.00267 1.03560 1.20688 0.90469 0.91512 0.99125 1.98383 1.49225 1.62942 1.91860 1.20750 1.01082 0.90909 1.04081 1.20500 0.90252 1.00587 0.93569 1.20054 0.97953 0.93155 1.08079 0.91613 0.92612 0.95454 0.97442 1.00631 0.92658 0.90072 0.91553 0.82352 0.82351 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 8.93 127.69 1.14 2.77 16 2 N -0.55 -23.58 4.74 -931.67 -4.42 -28.00 16 3 C 0.21 10.94 4.72 85.56 0.40 11.34 16 4 C -0.52 -29.52 8.46 25.60 0.22 -29.30 16 5 H 0.06 3.34 7.12 -2.91 -0.02 3.32 16 6 C 0.00 0.26 5.46 84.66 0.46 0.73 16 7 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 8 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 C 0.13 4.66 5.56 85.56 0.48 5.14 16 13 C 0.12 3.79 6.23 44.80 0.28 4.07 16 14 N -0.26 -8.47 12.55 -43.68 -0.55 -9.02 16 15 N -0.50 -12.39 7.37 -51.53 -0.38 -12.77 16 16 H 0.45 7.89 8.96 -213.46 -1.91 5.98 16 17 C 0.13 3.14 7.33 39.21 0.29 3.43 16 18 C -0.13 -2.50 9.84 22.39 0.22 -2.28 16 19 C 0.01 0.21 6.31 22.35 0.14 0.35 16 20 Cl -0.05 -0.84 28.93 -2.72 -0.08 -0.92 16 21 C -0.15 -2.75 9.74 22.05 0.21 -2.54 16 22 C -0.03 -0.64 9.27 22.25 0.21 -0.43 16 23 C -0.18 -5.04 5.28 -20.24 -0.11 -5.15 16 24 H 0.07 2.23 5.87 -2.39 -0.01 2.22 16 25 H 0.06 2.32 6.76 -2.39 -0.02 2.31 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.01 0.42 7.93 -2.39 -0.02 0.40 16 28 H -0.02 -1.32 8.12 -2.39 -0.02 -1.34 16 29 H 0.26 14.80 8.31 -92.71 -0.77 14.02 16 30 H 0.08 3.02 7.93 -2.39 -0.02 3.00 16 31 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 32 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -65.77 306.32 0.05 -65.72 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -0.78 Total: 5.74 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 3.94 Total: -11.88 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -5.06 Total: -104.90 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -65.77 0.05 -65.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237992135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.934 kcal (2) G-P(sol) polarization free energy of solvation -65.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds