Wall clock time and date at job start Tue Mar 31 2020 01:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38830 * 119.24898 * 2 1 4 4 C 1.36906 * 119.81373 * 179.97438 * 3 2 1 5 5 C 1.41076 * 118.40365 * 0.02562 * 4 3 2 6 6 C 1.40885 * 120.71922 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00041 * 154.02242 * 6 5 4 8 8 C 1.40015 * 119.99639 * 334.01605 * 6 5 4 9 9 N 1.30814 * 120.00140 * 334.70462 * 8 6 5 10 10 Si 1.86798 * 119.99622 * 154.70224 * 8 6 5 11 11 H 1.48506 * 109.47409 * 270.00074 * 10 8 6 12 12 H 1.48505 * 109.47337 * 29.99901 * 10 8 6 13 13 H 1.48499 * 109.47081 * 149.99839 * 10 8 6 14 14 C 1.41924 * 118.56183 * 0.26843 * 5 4 3 15 15 C 1.47744 * 119.99757 * 179.72857 * 14 5 4 16 16 C 1.41191 * 126.39242 * 324.68879 * 15 14 5 17 17 N 1.30513 * 108.09480 * 179.88091 * 16 15 14 18 18 N 1.39944 * 108.88593 * 0.37890 * 17 16 15 19 19 C 1.46499 * 125.79082 * 179.77770 * 18 17 16 20 20 F 1.39895 * 109.46965 * 29.97289 * 19 18 17 21 21 F 1.39903 * 109.47250 * 149.97914 * 19 18 17 22 22 C 1.34582 * 108.41898 * 359.75786 * 18 17 16 23 23 N 1.31777 * 119.24655 * 180.02562 * 2 1 3 24 24 H 1.08991 * 109.46909 * 89.99923 * 1 2 3 25 25 H 1.08999 * 109.47161 * 210.00164 * 1 2 3 26 26 H 1.09003 * 109.46480 * 329.99719 * 1 2 3 27 27 H 1.08001 * 120.09206 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.79438 * 179.97438 * 4 3 2 29 29 H 0.96998 * 120.00272 * 354.07127 * 9 8 6 30 30 H 1.08005 * 125.95191 * 0.03040 * 16 15 14 31 31 H 1.09005 * 109.47008 * 269.97728 * 19 18 17 32 32 H 1.08004 * 126.30825 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2113 0.0000 4 6 3.5543 1.2248 0.0005 5 6 4.2376 -0.0095 0.0005 6 6 5.6458 -0.0525 0.0005 7 1 6.1599 -0.9094 0.4102 8 6 6.3788 1.0156 -0.5308 9 7 5.8421 1.7899 -1.4384 10 14 8.1230 1.3351 0.0567 11 1 8.0925 2.2586 1.2192 12 1 8.7522 0.0519 0.4603 13 1 8.9109 1.9486 -1.0424 14 6 3.4757 -1.2068 -0.0059 15 6 4.1587 -2.5169 -0.0122 16 6 5.3686 -2.8277 -0.6701 17 7 5.6462 -4.0816 -0.4373 18 7 4.6363 -4.6281 0.3626 19 6 4.5761 -6.0118 0.8401 20 9 5.8747 -6.5081 0.9962 21 9 3.9103 -6.0521 2.0699 22 6 3.7299 -3.6668 0.6190 23 7 2.1508 -1.1498 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3632 0.8900 0.5139 27 1 1.6346 2.1403 0.0004 28 1 4.0981 2.1580 0.0001 29 1 4.9707 1.5744 -1.8060 30 1 5.9625 -2.1459 -1.2609 31 1 4.0381 -6.6231 0.1155 32 1 2.8327 -3.7752 1.2103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238865562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:08 Heat of formation + Delta-G solvation = -2.212478 kcal Electronic energy + Delta-G solvation = -21008.608909 eV Core-core repulsion = 17413.122195 eV Total energy + Delta-G solvation = -3595.486714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.25215 -47.37266 -40.56401 -38.54289 -34.70086 -32.73992 -31.50144 -30.76726 -28.95538 -27.81211 -25.70877 -24.23205 -22.30710 -21.22464 -20.35460 -19.82264 -18.20908 -18.01238 -17.78003 -17.15280 -15.36777 -14.82264 -14.62265 -14.25797 -14.15601 -14.07031 -13.92324 -13.72790 -13.46669 -13.20310 -12.70376 -12.48573 -12.17333 -11.96782 -11.75253 -11.57162 -11.34217 -11.15505 -10.93875 -10.51619 -10.33416 -9.79805 -9.31340 -9.20966 -8.82360 -8.24582 -8.18212 -7.50363 -7.19916 -4.59852 1.94426 2.20253 2.49101 2.67303 3.09127 3.17901 3.27625 3.51955 3.54820 3.87667 4.15122 4.42769 4.51955 5.16622 5.34682 5.41432 5.58860 5.91571 6.01852 6.10339 6.26262 6.30903 6.34649 6.44013 6.69357 6.85538 6.98363 7.01739 7.14717 7.40871 7.54254 7.59998 7.79301 7.96017 8.06738 8.44777 8.58674 9.45674 9.82448 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.006934 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.600208 B = 4037.066432 C = 5858.815095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.023 4.023 3 C -0.124 4.124 4 C -0.184 4.184 5 C 0.065 3.935 6 C -0.497 4.497 7 H 0.089 0.911 8 C 0.039 3.961 9 N -0.783 5.783 10 Si 1.063 2.937 11 H -0.273 1.273 12 H -0.272 1.272 13 H -0.274 1.274 14 C 0.058 3.942 15 C -0.109 4.109 16 C 0.094 3.906 17 N -0.298 5.298 18 N -0.448 5.448 19 C 0.516 3.484 20 F -0.179 7.179 21 F -0.187 7.187 22 C 0.054 3.946 23 N -0.447 5.447 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.301 0.699 30 H 0.199 0.801 31 H 0.148 0.852 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -7.827 2.038 8.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.209 4.209 5 C 0.060 3.940 6 C -0.524 4.524 7 H 0.107 0.893 8 C -0.185 4.185 9 N -0.405 5.405 10 Si 0.886 3.114 11 H -0.199 1.199 12 H -0.197 1.197 13 H -0.199 1.199 14 C -0.083 4.083 15 C -0.120 4.120 16 C -0.095 4.095 17 N -0.116 5.116 18 N -0.241 5.241 19 C 0.381 3.619 20 F -0.161 7.161 21 F -0.169 7.169 22 C -0.087 4.087 23 N -0.155 5.155 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.215 0.785 31 H 0.164 0.836 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.753 -8.635 1.736 8.840 hybrid contribution -1.440 0.566 0.553 1.644 sum -2.194 -8.068 2.289 8.669 Atomic orbital electron populations 1.20254 0.91436 1.00812 1.00446 1.20161 0.94848 0.88345 1.12906 1.21155 0.95029 0.97310 1.00964 1.21209 0.93463 0.97847 1.08413 1.18319 0.94225 0.90972 0.90460 1.20645 0.91355 1.05916 1.34530 0.89338 1.27124 1.06831 0.91473 0.93036 1.70442 1.18941 1.34759 1.16400 0.83639 0.72824 0.77637 0.77255 1.19855 1.19678 1.19928 1.18587 0.87731 0.89714 1.12299 1.18794 0.96833 0.92473 1.03943 1.24458 0.95884 0.91560 0.97567 1.77178 1.09529 1.11271 1.13669 1.49328 1.20876 1.09457 1.44443 1.21097 0.77686 0.80956 0.82140 1.93094 1.40249 1.86703 1.96015 1.93104 1.80466 1.95919 1.47391 1.22716 0.95934 0.87949 1.02135 1.66803 1.09648 1.29364 1.09681 0.93237 0.92645 0.92967 0.88229 0.86793 0.88572 0.78473 0.83563 0.80698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.15 36.01 0.37 -0.87 16 2 C -0.02 -0.50 6.79 -82.40 -0.56 -1.06 16 3 C -0.12 -2.73 9.64 -39.85 -0.38 -3.12 16 4 C -0.18 -4.41 8.01 -38.99 -0.31 -4.72 16 5 C 0.07 1.62 5.31 -106.41 -0.57 1.05 16 6 C -0.50 -11.95 7.03 -37.92 -0.27 -12.21 16 7 H 0.09 2.12 6.11 -52.49 -0.32 1.80 16 8 C 0.04 0.90 4.97 -17.32 -0.09 0.82 16 9 N -0.78 -19.12 12.35 55.55 0.69 -18.43 16 10 Si 1.06 20.27 30.00 -169.99 -5.10 15.17 16 11 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 12 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 13 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 14 C 0.06 1.39 6.74 -82.24 -0.55 0.83 16 15 C -0.11 -2.36 5.57 -104.98 -0.58 -2.94 16 16 C 0.09 1.94 9.88 -16.99 -0.17 1.77 16 17 N -0.30 -5.81 12.33 30.85 0.38 -5.43 16 18 N -0.45 -7.74 3.95 -66.02 -0.26 -8.01 16 19 C 0.52 6.60 6.62 59.85 0.40 7.00 16 20 F -0.18 -2.56 17.35 2.25 0.04 -2.52 16 21 F -0.19 -2.43 17.00 2.25 0.04 -2.39 16 22 C 0.05 1.02 11.00 -16.43 -0.18 0.83 16 23 N -0.45 -10.44 10.14 -5.45 -0.06 -10.49 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 28 H 0.11 2.77 6.63 -52.48 -0.35 2.42 16 29 H 0.30 7.55 6.71 -40.82 -0.27 7.28 16 30 H 0.20 4.00 6.88 -52.48 -0.36 3.63 16 31 H 0.15 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.18 2.94 8.06 -52.48 -0.42 2.52 16 LS Contribution 291.10 15.07 4.39 4.39 Total: -1.00 -27.84 291.10 -5.42 -33.26 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.63 Total: 7.07 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.90 Total: -12.62 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.75 Total: -42.36 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.08 Total: -4.90 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.10 Total: 15.17 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.84 -5.42 -33.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238865562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.044 kcal (2) G-P(sol) polarization free energy of solvation -27.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds