Wall clock time and date at job start Tue Mar 31 2020 01:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38830 * 119.24898 * 2 1 4 4 C 1.36906 * 119.81373 * 179.97438 * 3 2 1 5 5 C 1.41076 * 118.40365 * 0.02562 * 4 3 2 6 6 C 1.40885 * 120.71922 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00041 * 154.02242 * 6 5 4 8 8 C 1.40015 * 119.99639 * 334.01605 * 6 5 4 9 9 N 1.30814 * 120.00140 * 334.70462 * 8 6 5 10 10 Si 1.86798 * 119.99622 * 154.70224 * 8 6 5 11 11 H 1.48506 * 109.47409 * 270.00074 * 10 8 6 12 12 H 1.48505 * 109.47337 * 29.99901 * 10 8 6 13 13 H 1.48499 * 109.47081 * 149.99839 * 10 8 6 14 14 C 1.41924 * 118.56183 * 0.26843 * 5 4 3 15 15 C 1.47744 * 119.99757 * 179.72857 * 14 5 4 16 16 C 1.41191 * 126.39242 * 324.68879 * 15 14 5 17 17 N 1.30513 * 108.09480 * 179.88091 * 16 15 14 18 18 N 1.39944 * 108.88593 * 0.37890 * 17 16 15 19 19 C 1.46499 * 125.79082 * 179.77770 * 18 17 16 20 20 F 1.39895 * 109.46965 * 29.97289 * 19 18 17 21 21 F 1.39903 * 109.47250 * 149.97914 * 19 18 17 22 22 C 1.34582 * 108.41898 * 359.75786 * 18 17 16 23 23 N 1.31777 * 119.24655 * 180.02562 * 2 1 3 24 24 H 1.08991 * 109.46909 * 89.99923 * 1 2 3 25 25 H 1.08999 * 109.47161 * 210.00164 * 1 2 3 26 26 H 1.09003 * 109.46480 * 329.99719 * 1 2 3 27 27 H 1.08001 * 120.09206 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.79438 * 179.97438 * 4 3 2 29 29 H 0.96998 * 120.00272 * 354.07127 * 9 8 6 30 30 H 1.08005 * 125.95191 * 0.03040 * 16 15 14 31 31 H 1.09005 * 109.47008 * 269.97728 * 19 18 17 32 32 H 1.08004 * 126.30825 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2113 0.0000 4 6 3.5543 1.2248 0.0005 5 6 4.2376 -0.0095 0.0005 6 6 5.6458 -0.0525 0.0005 7 1 6.1599 -0.9094 0.4102 8 6 6.3788 1.0156 -0.5308 9 7 5.8421 1.7899 -1.4384 10 14 8.1230 1.3351 0.0567 11 1 8.0925 2.2586 1.2192 12 1 8.7522 0.0519 0.4603 13 1 8.9109 1.9486 -1.0424 14 6 3.4757 -1.2068 -0.0059 15 6 4.1587 -2.5169 -0.0122 16 6 5.3686 -2.8277 -0.6701 17 7 5.6462 -4.0816 -0.4373 18 7 4.6363 -4.6281 0.3626 19 6 4.5761 -6.0118 0.8401 20 9 5.8747 -6.5081 0.9962 21 9 3.9103 -6.0521 2.0699 22 6 3.7299 -3.6668 0.6190 23 7 2.1508 -1.1498 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3632 0.8900 0.5139 27 1 1.6346 2.1403 0.0004 28 1 4.0981 2.1580 0.0001 29 1 4.9707 1.5744 -1.8060 30 1 5.9625 -2.1459 -1.2609 31 1 4.0381 -6.6231 0.1155 32 1 2.8327 -3.7752 1.2103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238865562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:07 Heat of formation + Delta-G solvation = -18.017899 kcal Electronic energy + Delta-G solvation = -21009.294283 eV Core-core repulsion = 17413.122195 eV Total energy + Delta-G solvation = -3596.172088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.31065 -48.43897 -42.08014 -40.27527 -36.45091 -34.26545 -33.03492 -32.52085 -30.49216 -29.43492 -27.02462 -25.88697 -23.95567 -22.83303 -21.87688 -21.39147 -19.91989 -19.17986 -19.03002 -18.29090 -17.04967 -16.45198 -16.24963 -15.74502 -15.56402 -15.52225 -15.20969 -14.99886 -14.77658 -14.56556 -14.36980 -14.01560 -13.73637 -13.39218 -13.19390 -13.06669 -12.90245 -12.74028 -12.51273 -12.01283 -11.88376 -11.49271 -11.04564 -10.70020 -10.51776 -10.02560 -9.91548 -9.28936 -8.91241 -6.41888 0.36889 0.78781 0.89454 0.99302 1.52172 1.63426 1.78900 1.90268 2.29270 2.55813 2.67811 2.97272 3.52582 3.60161 3.81099 3.84203 4.07269 4.29778 4.46480 4.56396 4.61124 4.77767 4.93940 4.97411 5.08400 5.22070 5.25491 5.45744 5.58861 5.68716 5.72512 5.82694 6.00962 6.19262 6.53200 6.66473 6.79930 7.67603 7.98268 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.006934 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.600208 B = 4037.066432 C = 5858.815095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.026 4.026 3 C -0.131 4.131 4 C -0.200 4.200 5 C 0.037 3.963 6 C -0.514 4.514 7 H 0.083 0.917 8 C 0.011 3.989 9 N -0.805 5.805 10 Si 1.109 2.891 11 H -0.266 1.266 12 H -0.263 1.263 13 H -0.270 1.270 14 C 0.050 3.950 15 C -0.150 4.150 16 C 0.086 3.914 17 N -0.305 5.305 18 N -0.442 5.442 19 C 0.511 3.489 20 F -0.188 7.188 21 F -0.186 7.186 22 C 0.078 3.922 23 N -0.460 5.460 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.286 0.714 30 H 0.189 0.811 31 H 0.205 0.795 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 -9.146 2.724 10.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.166 4.166 3 C -0.151 4.151 4 C -0.226 4.226 5 C 0.032 3.968 6 C -0.542 4.542 7 H 0.101 0.899 8 C -0.208 4.208 9 N -0.427 5.427 10 Si 0.927 3.073 11 H -0.191 1.191 12 H -0.187 1.187 13 H -0.194 1.194 14 C -0.091 4.091 15 C -0.161 4.161 16 C -0.102 4.102 17 N -0.124 5.124 18 N -0.234 5.234 19 C 0.379 3.621 20 F -0.169 7.169 21 F -0.168 7.168 22 C -0.066 4.066 23 N -0.169 5.169 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.146 0.854 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.206 0.794 31 H 0.221 0.779 32 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.747 -9.987 2.424 10.424 hybrid contribution -1.298 0.837 0.394 1.594 sum -3.045 -9.150 2.818 10.047 Atomic orbital electron populations 1.20328 0.87898 1.02466 1.01830 1.21019 0.97277 0.87874 1.10443 1.21483 0.94439 0.98880 1.00322 1.21249 0.94561 0.97273 1.09511 1.18645 0.94967 0.91780 0.91387 1.20647 0.91437 1.06416 1.35693 0.89950 1.28258 1.09490 0.90846 0.92168 1.70543 1.18561 1.35735 1.17847 0.83074 0.69146 0.78004 0.77089 1.19098 1.18693 1.19428 1.18968 0.88192 0.90591 1.11304 1.18876 0.97906 0.92821 1.06501 1.24295 0.95857 0.92003 0.98043 1.77108 1.10285 1.10736 1.14313 1.49763 1.19620 1.10919 1.43096 1.22045 0.77800 0.79133 0.83167 1.93082 1.41263 1.86422 1.96116 1.93111 1.80264 1.95653 1.47722 1.22918 0.96108 0.87196 1.00399 1.66941 1.09365 1.30047 1.10568 0.91853 0.91865 0.90485 0.85412 0.88020 0.90188 0.79407 0.77880 0.78616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.14 10.15 71.24 0.72 -1.42 16 2 C -0.03 -1.12 6.79 42.71 0.29 -0.83 16 3 C -0.13 -5.71 9.64 22.10 0.21 -5.49 16 4 C -0.20 -9.85 8.01 22.65 0.18 -9.67 16 5 C 0.04 1.90 5.31 -21.02 -0.11 1.78 16 6 C -0.51 -25.64 7.03 23.35 0.16 -25.48 16 7 H 0.08 4.10 6.11 -2.91 -0.02 4.08 16 8 C 0.01 0.51 4.97 85.28 0.42 0.93 16 9 N -0.80 -40.70 12.35 21.84 0.27 -40.43 16 10 Si 1.11 41.43 30.00 68.60 2.06 43.48 16 11 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 12 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 13 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 14 C 0.05 2.43 6.74 42.45 0.29 2.72 16 15 C -0.15 -6.47 5.57 -20.09 -0.11 -6.58 16 16 C 0.09 3.60 9.88 85.61 0.85 4.45 16 17 N -0.30 -11.65 12.33 -56.30 -0.69 -12.35 16 18 N -0.44 -14.32 3.95 -362.79 -1.43 -15.75 16 19 C 0.51 11.37 6.62 127.77 0.85 12.21 16 20 F -0.19 -4.87 17.35 44.97 0.78 -4.09 16 21 F -0.19 -4.22 17.00 44.97 0.76 -3.46 16 22 C 0.08 2.78 11.00 84.22 0.93 3.70 16 23 N -0.46 -21.25 10.14 -171.15 -1.74 -22.98 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 27 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.10 5.15 6.63 -2.91 -0.02 5.13 16 29 H 0.29 15.09 6.71 -92.71 -0.62 14.47 16 30 H 0.19 8.01 6.88 -2.91 -0.02 7.99 16 31 H 0.21 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.20 6.08 8.06 -2.91 -0.02 6.05 16 Total: -1.00 -61.30 291.10 6.00 -55.30 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 1.32 Total: 23.95 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 4.68 Total: -23.68 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -3.59 Total: -91.51 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 1.54 Total: -7.54 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.06 Total: 43.48 kcal Total: -61.30 6.00 -55.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238865562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.283 kcal (2) G-P(sol) polarization free energy of solvation -61.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds