Wall clock time and date at job start Tue Mar 31 2020 00:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47121 * 59.99761 * 8 6 4 10 10 H 1.48496 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46792 * 299.99995 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.50703 * 109.47107 * 293.95458 * 12 2 1 14 14 C 1.36014 * 120.32161 * 259.72137 * 13 12 2 15 15 C 1.40545 * 119.68626 * 179.74952 * 14 13 12 16 16 Cl 1.73601 * 119.86408 * 180.30102 * 15 14 13 17 17 C 1.35052 * 120.27428 * 0.53178 * 15 14 13 18 18 N 1.36538 * 120.59118 * 359.72453 * 17 15 14 19 19 C 1.36824 * 132.56085 * 179.97438 * 18 17 15 20 20 C 1.35116 * 107.18245 * 180.02562 * 19 18 17 21 21 N 1.33495 * 108.62003 * 0.02562 * 20 19 18 22 22 C 1.32576 * 109.16238 * 359.97438 * 21 20 19 23 23 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 24 24 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 25 25 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 26 26 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 27 27 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 28 28 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 30 30 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 31 31 H 1.07999 * 120.15960 * 0.02562 * 14 13 12 32 32 H 1.07999 * 119.70733 * 179.74811 * 17 15 14 33 33 H 1.08000 * 126.40445 * 0.04596 * 19 18 17 34 34 H 1.08000 * 125.68401 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.1756 3.4298 4.2698 10 1 2.1150 5.5733 3.1380 11 1 0.1057 4.2231 3.2863 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9727 14 6 2.5565 -3.1053 -0.5019 15 6 2.2062 -4.4577 -0.3485 16 17 3.3738 -5.5895 0.2594 17 6 0.9665 -4.8813 -0.6764 18 7 0.0363 -4.0039 -1.1550 19 6 -1.2629 -4.1593 -1.5552 20 6 -1.7102 -2.9438 -1.9400 21 7 -0.7233 -2.0581 -1.7861 22 6 0.3476 -2.6781 -1.3103 23 1 -0.3632 -1.0253 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4511 -0.9233 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 2.9859 4.9182 0.7765 29 1 1.5612 -0.3873 -2.0628 30 1 3.0798 -0.6612 -1.1755 31 1 3.5498 -2.7694 -0.2430 32 1 0.7084 -5.9234 -0.5586 33 1 -1.8256 -5.0811 -1.5618 34 1 -2.7009 -2.7254 -2.3104 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248430475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:16 Heat of formation + Delta-G solvation = 79.368439 kcal Electronic energy + Delta-G solvation = -19104.514779 eV Core-core repulsion = 16064.362360 eV Total energy + Delta-G solvation = -3040.152420 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.87988 -39.12856 -38.37877 -37.18685 -35.26489 -34.17624 -31.40120 -30.20814 -29.25078 -28.00455 -26.01460 -23.98903 -23.77863 -22.74205 -21.54974 -19.03037 -18.46237 -17.97494 -17.27982 -17.06913 -16.69268 -16.00056 -15.76030 -15.52866 -15.19011 -14.66492 -14.52305 -14.03557 -13.91629 -13.64191 -13.40097 -13.06049 -12.90816 -12.60532 -12.55860 -12.46027 -12.10667 -12.04839 -11.80738 -11.63724 -11.30097 -11.05339 -10.60210 -9.72875 -9.08525 -8.82695 -8.19321 -6.29483 -0.40827 0.12897 0.68977 1.41309 1.44905 1.52864 1.77528 1.86599 2.33099 2.42988 3.12825 3.18310 3.34315 3.51574 3.62398 3.84321 3.97968 4.28235 4.43115 4.48064 4.56191 4.68490 4.72303 4.79307 4.83503 5.11072 5.12550 5.21003 5.26240 5.30349 5.64067 5.66097 5.97949 6.02951 6.27741 6.56940 6.84766 6.88115 7.39550 8.91655 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.019705 B = 0.004585 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.632995 B = 6105.536841 C = 6983.122476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.538 5.538 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.270 1.270 12 C 0.105 3.895 13 C -0.035 4.035 14 C -0.088 4.088 15 C -0.057 4.057 16 Cl -0.022 7.022 17 C 0.070 3.930 18 N -0.362 5.362 19 C -0.077 4.077 20 C 0.010 3.990 21 N -0.519 5.519 22 C 0.202 3.798 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.007 0.993 26 H 0.013 0.987 27 H -0.040 1.040 28 H 0.265 0.735 29 H 0.031 0.969 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.211 0.789 33 H 0.231 0.769 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 -23.296 -3.691 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.262 5.262 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.194 4.194 7 N -0.573 5.573 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.195 1.195 12 C -0.024 4.024 13 C -0.038 4.038 14 C -0.112 4.112 15 C -0.087 4.087 16 Cl 0.006 6.994 17 C -0.053 4.053 18 N -0.035 5.035 19 C -0.207 4.207 20 C -0.141 4.141 21 N -0.239 5.239 22 C -0.041 4.041 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.026 0.974 26 H 0.031 0.969 27 H -0.022 1.022 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.109 0.891 31 H 0.177 0.823 32 H 0.228 0.772 33 H 0.247 0.753 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.170 -22.662 -3.442 23.298 hybrid contribution -0.189 0.480 -0.018 0.516 sum -4.359 -22.182 -3.460 22.869 Atomic orbital electron populations 1.22123 0.87455 1.00538 0.98660 1.62183 1.08244 1.15411 1.40318 1.19417 0.94009 0.83289 0.95074 1.21386 1.35068 0.97641 1.02216 0.92260 1.25890 0.94928 0.97866 1.00742 1.70075 1.39203 1.11898 1.36166 0.85437 0.78710 0.77280 0.79190 1.19194 1.20549 1.19513 1.20825 1.00473 0.88576 0.92485 1.18800 0.89328 0.96152 0.99507 1.20962 1.01277 0.90604 0.98388 1.20018 0.91739 0.91494 1.05483 1.98396 1.56358 1.58818 1.85780 1.21757 0.87197 0.97143 0.99168 1.42963 1.11326 1.08586 1.40607 1.23405 0.82821 1.03524 1.10973 1.23190 0.99979 0.88706 1.02188 1.70876 0.99738 1.32743 1.20548 1.20774 0.96406 0.81348 1.05565 0.91537 0.93584 0.97400 0.96908 1.02187 0.92602 0.95134 0.89123 0.82343 0.77212 0.75306 0.77735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.77 8.15 127.69 1.04 3.81 16 2 N -0.54 -25.37 4.74 -931.63 -4.42 -29.79 16 3 C 0.21 11.66 4.72 85.56 0.40 12.06 16 4 C -0.52 -30.99 8.46 25.60 0.22 -30.78 16 5 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 6 C 0.00 0.23 5.46 84.66 0.46 0.69 16 7 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 8 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.10 4.12 5.19 85.56 0.44 4.57 16 13 C -0.03 -1.14 5.15 -19.72 -0.10 -1.24 16 14 C -0.09 -2.32 9.48 22.32 0.21 -2.11 16 15 C -0.06 -1.19 6.28 22.10 0.14 -1.05 16 16 Cl -0.02 -0.38 28.94 -2.72 -0.08 -0.46 16 17 C 0.07 1.26 10.70 83.23 0.89 2.15 16 18 N -0.36 -8.44 2.95 -352.04 -1.04 -9.47 16 19 C -0.08 -1.40 11.76 83.19 0.98 -0.42 16 20 C 0.01 0.23 11.83 83.72 0.99 1.22 16 21 N -0.52 -17.31 9.12 -194.36 -1.77 -19.08 16 22 C 0.20 6.43 6.06 134.10 0.81 7.24 16 23 H 0.07 2.81 4.97 -2.38 -0.01 2.79 16 24 H 0.05 2.22 6.76 -2.39 -0.02 2.20 16 25 H 0.01 0.36 8.11 -2.39 -0.02 0.34 16 26 H 0.01 0.75 7.93 -2.39 -0.02 0.73 16 27 H -0.04 -2.43 8.12 -2.38 -0.02 -2.45 16 28 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.03 1.28 8.12 -2.39 -0.02 1.26 16 30 H 0.09 3.33 7.79 -2.39 -0.02 3.31 16 31 H 0.16 3.87 8.03 -2.91 -0.02 3.85 16 32 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.21 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -72.83 302.55 2.60 -70.23 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: 1.11 Total: 2.04 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.49 Total: -3.87 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -6.94 Total: -115.36 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -72.83 2.60 -70.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248430475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.600 kcal (2) G-P(sol) polarization free energy of solvation -72.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds