Wall clock time and date at job start Tue Mar 31 2020 00:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00276 * 2 1 4 4 H 1.07996 * 119.99861 * 202.81593 * 3 2 1 5 5 C 1.38809 * 119.99840 * 22.81325 * 3 2 1 6 6 N 1.31624 * 120.00397 * 13.61652 * 5 3 2 7 7 Si 1.86802 * 120.00233 * 193.61881 * 5 3 2 8 8 H 1.48508 * 109.46672 * 59.99968 * 7 5 3 9 9 H 1.48497 * 109.47614 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46845 * 300.00351 * 7 5 3 11 11 C 1.46506 * 119.99576 * 179.97438 * 2 1 3 12 12 C 1.50693 * 109.46977 * 272.97225 * 11 2 1 13 13 C 1.34285 * 126.53311 * 355.71958 * 12 11 2 14 14 N 1.36975 * 109.92343 * 179.97438 * 13 12 11 15 15 C 1.46500 * 125.03996 * 179.97438 * 14 13 12 16 16 C 1.37047 * 109.91584 * 0.22909 * 14 13 12 17 17 C 1.39396 * 134.64324 * 179.75441 * 16 14 13 18 18 C 1.36669 * 119.01370 * 180.02562 * 17 16 14 19 19 N 1.32336 * 121.67205 * 359.97438 * 18 17 16 20 20 C 1.31819 * 122.20690 * 359.62302 * 19 18 17 21 21 Cl 1.73601 * 120.02158 * 179.97438 * 20 19 18 22 22 C 1.39505 * 119.95297 * 0.59537 * 20 19 18 23 23 H 1.08997 * 109.46896 * 275.12003 * 1 2 3 24 24 H 1.09005 * 109.46784 * 35.11861 * 1 2 3 25 25 H 1.08993 * 109.47278 * 155.11572 * 1 2 3 26 26 H 0.96999 * 120.00099 * 179.97438 * 6 5 3 27 27 H 1.09007 * 109.46577 * 152.97248 * 11 2 1 28 28 H 1.09000 * 109.47243 * 32.97571 * 11 2 1 29 29 H 1.07997 * 125.03253 * 359.96259 * 13 12 11 30 30 H 1.08998 * 109.47327 * 90.02094 * 15 14 13 31 31 H 1.09004 * 109.46963 * 330.01988 * 15 14 13 32 32 H 1.08998 * 109.47172 * 210.02900 * 15 14 13 33 33 H 1.08005 * 120.49920 * 359.97438 * 17 16 14 34 34 H 1.07991 * 119.16448 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1664 1.2224 -0.3627 5 6 1.5372 2.3410 0.4661 6 7 0.4149 2.2611 1.1492 7 14 2.3054 4.0090 0.1239 8 1 2.3987 4.2192 -1.3433 9 1 1.4628 5.0746 0.7236 10 1 3.6653 4.0590 0.7185 11 6 2.1975 -1.2688 0.0006 12 6 2.3848 -1.7400 1.4196 13 6 2.0305 -1.0803 2.5343 14 7 2.3578 -1.8211 3.6390 15 6 2.1188 -1.4139 5.0258 16 6 2.9471 -2.9972 3.2547 17 6 3.4696 -4.0980 3.9316 18 6 3.9984 -5.1307 3.2092 19 7 4.0257 -5.1108 1.8863 20 6 3.5408 -4.1029 1.1886 21 17 3.6069 -4.1357 -0.5458 22 6 2.9862 -3.0041 1.8453 23 1 -0.3633 0.0917 1.0235 24 1 -0.3633 0.8406 -0.5912 25 1 -0.3633 -0.9322 -0.4324 26 1 -0.0129 3.0683 1.4752 27 1 3.1720 -1.1259 -0.4665 28 1 1.6325 -2.0148 -0.5584 29 1 1.5579 -0.1095 2.5564 30 1 1.1357 -1.7622 5.3425 31 1 2.1596 -0.3269 5.0975 32 1 2.8832 -1.8493 5.6693 33 1 3.4575 -4.1341 5.0110 34 1 4.4042 -5.9845 3.7311 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248837397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:15 Heat of formation + Delta-G solvation = 77.382456 kcal Electronic energy + Delta-G solvation = -19486.650460 eV Core-core repulsion = 16446.411921 eV Total energy + Delta-G solvation = -3040.238538 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.58714 -39.30557 -37.67301 -37.34248 -34.36503 -32.84325 -32.25757 -30.25797 -28.86766 -27.83161 -26.33139 -24.34614 -23.31641 -22.96893 -20.57808 -18.72318 -18.25522 -17.84860 -16.79463 -16.64701 -16.52789 -15.71322 -15.43282 -15.39644 -15.03091 -14.92728 -14.54692 -13.86224 -13.54220 -13.34022 -13.05947 -12.95730 -12.81388 -12.67357 -12.59296 -12.39065 -12.17257 -12.13633 -11.99889 -11.78675 -10.66705 -10.59539 -10.49387 -9.66849 -8.79843 -8.56269 -7.78639 -5.26706 -0.17863 0.48237 0.90870 1.48513 1.51066 1.56536 1.73110 1.83211 2.53771 2.80333 3.34079 3.48495 3.65737 3.81307 3.89823 4.02582 4.14456 4.40961 4.51500 4.56116 4.66463 4.71689 4.75330 4.84538 4.90216 4.92648 5.31168 5.36210 5.50108 5.67320 5.70271 5.73951 6.08839 6.32193 6.38809 6.88721 7.19895 7.89484 8.35474 9.23611 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.006046 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.775952 B = 4630.328695 C = 5486.347743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.609 5.609 3 C -0.256 4.256 4 H 0.063 0.937 5 C -0.040 4.040 6 N -0.931 5.931 7 Si 0.959 3.041 8 H -0.284 1.284 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.225 3.775 12 C -0.178 4.178 13 C 0.073 3.927 14 N -0.479 5.479 15 C 0.073 3.927 16 C 0.123 3.877 17 C -0.163 4.163 18 C 0.104 3.896 19 N -0.520 5.520 20 C 0.218 3.782 21 Cl -0.036 7.036 22 C -0.168 4.168 23 H 0.011 0.989 24 H 0.018 0.982 25 H 0.022 0.978 26 H 0.248 0.752 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.174 0.826 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.422 -12.046 8.698 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.332 5.332 3 C -0.387 4.387 4 H 0.081 0.919 5 C -0.236 4.236 6 N -0.577 5.577 7 Si 0.788 3.212 8 H -0.210 1.210 9 H -0.220 1.220 10 H -0.206 1.206 11 C 0.098 3.902 12 C -0.187 4.187 13 C -0.051 4.051 14 N -0.162 5.162 15 C -0.067 4.067 16 C 0.007 3.993 17 C -0.186 4.186 18 C -0.046 4.046 19 N -0.234 5.234 20 C 0.047 3.953 21 Cl -0.007 7.007 22 C -0.178 4.178 23 H 0.030 0.970 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.180 0.820 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.191 0.809 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.604 -12.491 8.551 15.822 hybrid contribution -0.274 2.035 -0.022 2.053 sum 4.330 -10.457 8.529 14.172 Atomic orbital electron populations 1.20551 0.82535 0.95637 0.97966 1.44073 1.02030 1.01155 1.85902 1.19378 0.98195 0.86441 1.34643 0.91875 1.25553 0.98561 1.00896 0.98580 1.70168 1.20612 1.27445 1.39524 0.85478 0.77603 0.80429 0.77695 1.21007 1.21960 1.20629 1.19207 0.95421 0.86354 0.89180 1.21604 1.05835 0.93220 0.98090 1.21836 1.01338 0.97382 0.84576 1.44042 1.50017 1.14278 1.07829 1.22263 1.04062 1.02705 0.77661 1.18603 0.98468 0.89705 0.92524 1.21157 1.02939 0.91804 1.02712 1.22533 0.96357 0.98689 0.86980 1.67024 1.19800 1.26158 1.10389 1.21069 0.96797 0.90498 0.86964 1.98372 1.96683 1.98182 1.07492 1.19788 1.07463 0.96589 0.93946 0.97041 0.96364 0.95946 0.94254 0.93084 0.92575 0.81955 0.89765 0.89691 0.87269 0.80871 0.78083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.70 9.02 127.77 1.15 9.85 16 2 N -0.61 -30.24 2.12 -731.30 -1.55 -31.79 16 3 C -0.26 -13.76 9.65 84.03 0.81 -12.95 16 4 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 5 C -0.04 -2.17 5.09 84.86 0.43 -1.74 16 6 N -0.93 -51.80 10.73 21.65 0.23 -51.57 16 7 Si 0.96 44.07 29.57 68.60 2.03 46.10 16 8 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 9 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 C 0.23 9.76 5.28 85.63 0.45 10.21 16 12 C -0.18 -7.30 6.28 -18.67 -0.12 -7.42 16 13 C 0.07 2.93 10.63 82.99 0.88 3.81 16 14 N -0.48 -14.97 3.17 -539.11 -1.71 -16.68 16 15 C 0.07 1.50 11.04 127.77 1.41 2.91 16 16 C 0.12 3.79 6.84 39.28 0.27 4.06 16 17 C -0.16 -3.64 10.04 22.18 0.22 -3.42 16 18 C 0.10 2.35 11.09 84.25 0.93 3.29 16 19 N -0.52 -15.90 10.33 -186.77 -1.93 -17.83 16 20 C 0.22 7.47 7.33 85.00 0.62 8.10 16 21 Cl -0.04 -1.17 27.96 -2.72 -0.08 -1.24 16 22 C -0.17 -6.13 6.24 -20.20 -0.13 -6.25 16 23 H 0.01 0.59 7.34 -2.39 -0.02 0.57 16 24 H 0.02 0.94 7.34 -2.38 -0.02 0.92 16 25 H 0.02 0.96 7.87 -2.39 -0.02 0.94 16 26 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 27 H 0.05 2.24 8.00 -2.38 -0.02 2.22 16 28 H 0.06 2.31 7.76 -2.39 -0.02 2.29 16 29 H 0.16 7.62 7.75 -2.91 -0.02 7.59 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.11 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.20 2.71 8.06 -2.92 -0.02 2.69 16 Total: -1.00 -64.09 306.47 5.05 -59.03 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: 1.11 Total: 3.53 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 6.95 Total: 10.45 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -4.95 Total: -117.86 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.24 kcal Total: -64.09 5.05 -59.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248837397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.415 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds