Wall clock time and date at job start Tue Mar 31 2020 00:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00023 * 2 1 4 4 H 1.08998 * 109.47540 * 17.04507 * 3 2 1 5 5 C 1.53004 * 109.47150 * 257.04150 * 3 2 1 6 6 S 1.81401 * 109.46760 * 65.54104 * 5 3 2 7 7 O 1.42108 * 110.54255 * 287.86987 * 6 5 3 8 8 O 1.42094 * 110.54321 * 64.61723 * 6 5 3 9 9 N 1.65598 * 104.44840 * 176.24482 * 6 5 3 10 10 C 1.36939 * 120.00334 * 65.00045 * 9 6 5 11 11 H 1.07996 * 119.99816 * 359.97438 * 10 9 6 12 12 C 1.38807 * 120.00085 * 179.97438 * 10 9 6 13 13 N 1.31615 * 120.00260 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00077 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46808 * 90.00179 * 14 12 10 16 16 H 1.48498 * 109.47190 * 210.00269 * 14 12 10 17 17 H 1.48497 * 109.47059 * 330.00745 * 14 12 10 18 18 C 1.53006 * 109.47168 * 137.04566 * 3 2 1 19 19 H 1.09003 * 110.75418 * 179.29543 * 18 3 2 20 20 C 1.55304 * 110.84619 * 302.76944 * 18 3 2 21 21 C 1.55209 * 100.82394 * 152.17580 * 20 18 3 22 22 O 1.43638 * 105.26362 * 323.81891 * 21 20 18 23 23 C 1.43236 * 109.97278 * 24.28033 * 22 21 20 24 24 H 1.09000 * 109.47070 * 296.64388 * 1 2 3 25 25 H 1.08995 * 109.47857 * 176.64110 * 1 2 3 26 26 H 1.08999 * 109.47061 * 56.63853 * 1 2 3 27 27 H 1.09000 * 109.47391 * 185.53773 * 5 3 2 28 28 H 1.08998 * 109.46946 * 305.54695 * 5 3 2 29 29 H 0.97006 * 119.99930 * 244.99786 * 9 6 5 30 30 H 0.97001 * 120.00381 * 179.97438 * 13 12 10 31 31 H 1.08993 * 111.12607 * 270.23766 * 20 18 3 32 32 H 1.09000 * 111.12359 * 34.40657 * 20 18 3 33 33 H 1.08997 * 110.37236 * 204.79583 * 21 20 18 34 34 H 1.09004 * 110.21198 * 82.75435 * 21 20 18 35 35 H 1.09001 * 109.83445 * 238.77584 * 23 22 21 36 36 H 1.09008 * 109.83018 * 117.80619 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2605 2.0370 0.3012 5 6 2.5132 1.6397 -1.4058 6 16 1.1027 1.7575 -2.5404 7 8 0.5639 0.4687 -2.8016 8 8 0.2612 2.8438 -2.1787 9 7 1.7706 2.2210 -3.9831 10 6 2.6327 1.3833 -4.6391 11 1 2.8775 0.4206 -4.2153 12 6 3.1921 1.7717 -5.8486 13 7 2.8943 2.9451 -6.3649 14 14 4.3688 0.6293 -6.7431 15 1 3.6024 -0.2488 -7.6634 16 1 5.3429 1.4341 -7.5232 17 1 5.0962 -0.2055 -5.7536 18 6 3.1822 1.3419 0.9830 19 1 3.6495 2.3266 0.9904 20 6 2.7197 0.9388 2.4097 21 6 4.0344 0.3493 2.9867 22 8 4.6649 -0.3202 1.8833 23 6 4.2159 0.2457 0.6464 24 1 -0.3633 0.4608 0.9185 25 1 -0.3634 -1.0258 -0.0602 26 1 -0.3633 0.5651 -0.8583 27 1 3.0433 2.5919 -1.3852 28 1 3.1887 0.8550 -1.7462 29 1 1.5510 3.0858 -4.3636 30 1 3.2855 3.2167 -7.2100 31 1 2.3935 1.8099 2.9777 32 1 1.9360 0.1822 2.3694 33 1 3.8142 -0.3604 3.7841 34 1 4.6742 1.1494 3.3592 35 1 3.7501 -0.5264 0.0340 36 1 5.0592 0.6840 0.1126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261578769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:04 Heat of formation + Delta-G solvation = -164.261316 kcal Electronic energy + Delta-G solvation = -21156.890373 eV Core-core repulsion = 17768.615410 eV Total energy + Delta-G solvation = -3388.274963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.77377 -37.69011 -35.96351 -34.86798 -34.68081 -33.20406 -31.04949 -30.66594 -28.29695 -26.49251 -24.59770 -23.83254 -22.12859 -20.33567 -18.35782 -18.11545 -17.26568 -16.90242 -16.18255 -15.91066 -15.32150 -14.91614 -14.78796 -14.72249 -14.29028 -14.10317 -13.59188 -13.33019 -12.97801 -12.62659 -12.10418 -11.97798 -11.79988 -11.44325 -11.36229 -11.31729 -11.14992 -11.04753 -10.87786 -10.79167 -10.61193 -10.54300 -10.31268 -10.08762 -9.81976 -9.47111 -9.35345 -8.32628 -6.56210 -3.95725 1.33675 3.15114 3.20019 3.21649 3.71714 3.87759 3.95116 4.22132 4.36563 4.62651 4.79981 4.88211 4.98826 5.05369 5.15124 5.19989 5.24498 5.32033 5.48157 5.54774 5.57900 5.66128 5.70011 5.88537 5.93283 5.94593 5.98912 6.22608 6.31785 6.94992 7.02139 7.21945 7.39662 8.58669 8.71239 9.15073 10.59142 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.005921 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.637930 B = 4727.811027 C = 5521.442259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.373 6.373 3 C 0.114 3.886 4 H 0.074 0.926 5 C -0.679 4.679 6 S 2.536 3.464 7 O -0.961 6.961 8 O -1.008 7.008 9 N -0.948 5.948 10 C -0.272 4.272 11 H 0.106 0.894 12 C 0.029 3.971 13 N -0.873 5.873 14 Si 0.925 3.075 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.267 1.267 18 C -0.117 4.117 19 H 0.096 0.904 20 C -0.154 4.154 21 C 0.053 3.947 22 O -0.387 6.387 23 C 0.059 3.941 24 H 0.041 0.959 25 H 0.095 0.905 26 H 0.044 0.956 27 H 0.125 0.875 28 H 0.130 0.870 29 H 0.409 0.591 30 H 0.276 0.724 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -1.775 13.400 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.291 6.291 3 C 0.055 3.945 4 H 0.092 0.908 5 C -0.800 4.800 6 S 2.628 3.372 7 O -0.950 6.950 8 O -0.997 6.997 9 N -0.699 5.699 10 C -0.413 4.413 11 H 0.123 0.877 12 C -0.179 4.179 13 N -0.514 5.514 14 Si 0.751 3.249 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.191 1.191 18 C -0.137 4.137 19 H 0.114 0.886 20 C -0.191 4.191 21 C -0.023 4.023 22 O -0.306 6.306 23 C -0.017 4.017 24 H 0.060 0.940 25 H 0.114 0.886 26 H 0.063 0.937 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.245 0.755 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.698 -2.325 13.690 13.903 hybrid contribution 0.991 0.535 -0.626 1.288 sum 1.689 -1.791 13.064 13.294 Atomic orbital electron populations 1.23066 0.80717 1.04056 0.99787 1.87963 1.19772 1.26610 1.94802 1.21509 0.94912 0.85583 0.92505 0.90801 1.31507 1.26537 1.09953 1.12018 1.09598 0.78961 0.74235 0.74372 1.93496 1.77131 1.41375 1.83041 1.93415 1.67390 1.54795 1.84064 1.51792 1.60571 1.28809 1.28685 1.19415 1.21719 0.97278 1.02842 0.87667 1.25307 0.98010 0.96768 0.97793 1.69696 1.42568 1.19550 1.19594 0.85947 0.79671 0.79588 0.79709 1.19948 1.20629 1.19117 1.22918 0.95918 1.00448 0.94401 0.88621 1.23371 0.98849 1.01866 0.95054 1.23338 0.92381 0.96393 0.90203 1.88375 1.67853 1.59896 1.14481 1.23162 0.96079 0.95843 0.86634 0.94015 0.88639 0.93701 0.85621 0.85164 0.75549 0.91402 0.90091 0.89424 0.90033 0.92555 0.89673 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.06 101.05 1.02 1.32 16 2 O -0.37 -6.15 8.18 -35.23 -0.29 -6.44 16 3 C 0.11 1.77 2.05 -26.73 -0.05 1.71 16 4 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 5 C -0.68 -11.75 5.43 37.16 0.20 -11.55 16 6 S 2.54 54.57 4.07 -107.50 -0.44 54.13 16 7 O -0.96 -22.89 15.52 -58.13 -0.90 -23.79 16 8 O -1.01 -23.28 18.08 -57.54 -1.04 -24.32 16 9 N -0.95 -22.74 5.65 31.49 0.18 -22.56 16 10 C -0.27 -6.77 9.50 -15.06 -0.14 -6.92 16 11 H 0.11 2.49 7.82 -52.49 -0.41 2.08 16 12 C 0.03 0.74 5.50 -17.43 -0.10 0.64 16 13 N -0.87 -22.83 13.06 55.49 0.72 -22.10 16 14 Si 0.92 19.33 29.55 -169.99 -5.02 14.31 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 C -0.12 -1.54 2.90 -88.67 -0.26 -1.80 16 19 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 20 C -0.15 -1.70 6.58 -24.34 -0.16 -1.86 16 21 C 0.05 0.59 7.78 38.33 0.30 0.89 16 22 O -0.39 -5.67 11.36 -35.23 -0.40 -6.07 16 23 C 0.06 0.85 6.49 37.88 0.25 1.09 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.04 0.78 5.20 -51.93 -0.27 0.51 16 27 H 0.13 1.94 8.14 -51.92 -0.42 1.52 16 28 H 0.13 2.25 7.49 -51.92 -0.39 1.86 16 29 H 0.41 10.09 7.99 -34.47 -0.28 9.81 16 30 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.02 7.33 -51.93 -0.38 0.64 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.35 6.94 -51.93 -0.36 0.99 16 36 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 306.97 15.07 4.63 4.63 Total: -1.00 -30.49 306.97 -6.51 -37.00 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.00 Total: 11.67 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 1.05 Total: -16.47 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.90 Total: -44.66 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -2.63 Total: -60.61 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: 54.57 SS G_CDS: -0.44 Total: 54.13 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.49 -6.51 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261578769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.262 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds