Wall clock time and date at job start Tue Mar 31 2020 00:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99567 * 2 1 4 4 H 1.09003 * 109.47418 * 30.00917 * 3 2 1 5 5 C 1.53001 * 109.46599 * 150.00655 * 3 2 1 6 6 S 1.81401 * 109.47250 * 299.99899 * 5 3 2 7 7 O 1.42101 * 110.54062 * 68.37830 * 6 5 3 8 8 O 1.42107 * 110.54249 * 291.62987 * 6 5 3 9 9 N 1.65598 * 104.45215 * 180.02562 * 6 5 3 10 10 C 1.36945 * 119.99779 * 65.00169 * 9 6 5 11 11 H 1.07997 * 119.99756 * 359.97438 * 10 9 6 12 12 C 1.38805 * 119.99878 * 179.97438 * 10 9 6 13 13 N 1.31624 * 120.00257 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99929 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47174 * 270.00277 * 14 12 10 16 16 H 1.48501 * 109.47062 * 30.00228 * 14 12 10 17 17 H 1.48499 * 109.46981 * 150.00382 * 14 12 10 18 18 C 1.52996 * 109.47689 * 270.00358 * 3 2 1 19 19 H 1.09007 * 110.75265 * 302.02546 * 18 3 2 20 20 C 1.55311 * 110.84573 * 65.71749 * 18 3 2 21 21 C 1.54938 * 100.94183 * 152.32743 * 20 18 3 22 22 O 1.43652 * 105.13579 * 323.55574 * 21 20 18 23 23 C 1.43232 * 109.96875 * 24.43060 * 22 21 20 24 24 H 1.08996 * 109.46651 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46689 * 299.99363 * 1 2 3 26 26 H 1.08992 * 109.47446 * 59.99134 * 1 2 3 27 27 H 1.09000 * 109.46946 * 180.02562 * 5 3 2 28 28 H 1.08994 * 109.47777 * 60.00185 * 5 3 2 29 29 H 0.96996 * 120.00438 * 245.00124 * 9 6 5 30 30 H 0.97001 * 119.99885 * 179.97438 * 13 12 10 31 31 H 1.09004 * 111.12265 * 270.24227 * 20 18 3 32 32 H 1.08997 * 111.12343 * 34.40147 * 20 18 3 33 33 H 1.09001 * 110.31171 * 204.64041 * 21 20 18 34 34 H 1.09005 * 110.31454 * 82.46910 * 21 20 18 35 35 H 1.09001 * 109.82695 * 238.77576 * 23 22 21 36 36 H 1.08999 * 109.82888 * 117.80749 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5140 5 6 3.3589 1.2632 0.7211 6 16 3.1132 0.7107 2.4314 7 8 2.7179 -0.6538 2.4626 8 8 2.4093 1.6946 3.1770 9 7 4.6333 0.7112 3.0883 10 6 5.3160 1.8894 3.2335 11 1 4.8632 2.8182 2.9192 12 6 6.5899 1.8900 3.7847 13 7 7.1420 0.7580 4.1673 14 14 7.5215 3.4970 3.9821 15 1 8.3205 3.7596 2.7582 16 1 6.5564 4.6062 4.1906 17 1 8.4282 3.4028 5.1544 18 6 2.2176 1.7716 -1.4424 19 1 2.8522 1.0722 -1.9868 20 6 0.8549 1.9639 -2.1624 21 6 1.2238 3.0488 -3.2053 22 8 2.1589 3.9098 -2.5360 23 6 2.8116 3.1960 -1.4796 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 3.8020 2.2591 0.7216 28 1 4.0242 0.5695 0.2073 29 1 5.0401 -0.1229 3.3703 30 1 8.0324 0.7584 4.5521 31 1 0.5349 1.0430 -2.6500 32 1 0.0933 2.3257 -1.4717 33 1 0.3362 3.6093 -3.4983 34 1 1.6889 2.5915 -4.0787 35 1 2.6312 3.6968 -0.5285 36 1 3.8828 3.1449 -1.6747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261578770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:07 Heat of formation + Delta-G solvation = -164.290877 kcal Electronic energy + Delta-G solvation = -21003.849090 eV Core-core repulsion = 17615.572845 eV Total energy + Delta-G solvation = -3388.276245 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.92948 -37.76626 -35.85758 -34.75265 -34.60307 -33.22431 -31.05617 -30.96211 -28.44388 -26.44011 -24.54461 -23.72919 -22.21516 -20.63348 -18.26473 -18.08604 -17.35021 -16.95160 -16.17871 -15.94591 -15.38269 -14.93961 -14.74841 -14.65357 -14.42001 -14.22035 -13.58657 -13.44687 -13.10968 -12.40838 -12.17660 -11.96232 -11.93721 -11.51696 -11.33860 -11.23279 -11.05370 -10.96081 -10.92861 -10.83899 -10.75823 -10.56594 -10.30444 -10.01565 -9.90342 -9.62100 -9.35457 -8.28118 -6.50829 -3.92192 1.41550 3.15013 3.20846 3.24396 3.67472 3.76445 3.95305 4.21139 4.38154 4.54939 4.77075 4.83940 4.97019 5.02122 5.04327 5.12897 5.27526 5.34936 5.36645 5.39975 5.52091 5.55054 5.60867 5.68618 5.74806 5.83190 5.98495 6.04406 6.27649 6.86699 6.97578 7.17168 7.45279 8.64056 8.77280 9.20775 10.64805 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.005981 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.764340 B = 4680.274262 C = 5763.071254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.371 6.371 3 C 0.115 3.885 4 H 0.072 0.928 5 C -0.660 4.660 6 S 2.550 3.450 7 O -0.987 6.987 8 O -0.976 6.976 9 N -0.952 5.952 10 C -0.278 4.278 11 H 0.103 0.897 12 C 0.030 3.970 13 N -0.875 5.875 14 Si 0.922 3.078 15 H -0.276 1.276 16 H -0.266 1.266 17 H -0.280 1.280 18 C -0.136 4.136 19 H 0.096 0.904 20 C -0.157 4.157 21 C 0.052 3.948 22 O -0.386 6.386 23 C 0.055 3.945 24 H 0.090 0.910 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.410 0.590 30 H 0.275 0.725 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 2.371 -11.910 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.290 6.290 3 C 0.056 3.944 4 H 0.090 0.910 5 C -0.780 4.780 6 S 2.642 3.358 7 O -0.975 6.975 8 O -0.966 6.966 9 N -0.703 5.703 10 C -0.418 4.418 11 H 0.121 0.879 12 C -0.178 4.178 13 N -0.516 5.516 14 Si 0.748 3.252 15 H -0.202 1.202 16 H -0.191 1.191 17 H -0.206 1.206 18 C -0.155 4.155 19 H 0.115 0.885 20 C -0.195 4.195 21 C -0.025 4.025 22 O -0.305 6.305 23 C -0.022 4.022 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.246 0.754 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.444 2.234 -11.605 15.128 hybrid contribution 1.073 0.532 -0.387 1.259 sum -8.371 2.766 -11.992 14.884 Atomic orbital electron populations 1.23052 0.81222 1.03344 1.00306 1.88081 1.19664 1.26413 1.94828 1.21607 0.93301 0.85472 0.94024 0.91032 1.31148 1.02461 1.13229 1.31191 1.08834 0.75769 0.73816 0.77404 1.93431 1.82627 1.34342 1.87131 1.93475 1.72935 1.62660 1.67502 1.51800 1.39071 1.14479 1.64981 1.19345 0.98636 0.85406 1.38374 0.87922 1.25275 0.96584 0.98488 0.97453 1.69702 1.16380 1.25956 1.39543 0.85985 0.79557 0.81427 0.78182 1.20172 1.19085 1.20573 1.23241 0.97078 0.97854 0.97359 0.88542 1.23484 0.97606 0.99861 0.98502 1.23366 0.92651 0.91446 0.95028 1.88398 1.56744 1.37183 1.48190 1.23216 0.97206 0.90551 0.91199 0.89189 0.93752 0.93414 0.84961 0.85459 0.75449 0.91496 0.89466 0.90187 0.89835 0.92205 0.90563 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.59 101.05 1.07 1.29 16 2 O -0.37 -6.07 9.36 -41.99 -0.39 -6.47 16 3 C 0.12 1.77 1.73 -26.73 -0.05 1.73 16 4 H 0.07 1.06 7.77 -51.93 -0.40 0.66 16 5 C -0.66 -11.40 5.52 37.16 0.21 -11.20 16 6 S 2.55 55.98 5.22 -107.50 -0.56 55.42 16 7 O -0.99 -23.77 17.41 -61.89 -1.08 -24.85 16 8 O -0.98 -23.83 17.76 -57.54 -1.02 -24.85 16 9 N -0.95 -23.07 5.65 31.50 0.18 -22.89 16 10 C -0.28 -6.93 9.49 -15.06 -0.14 -7.08 16 11 H 0.10 2.39 7.82 -52.49 -0.41 1.98 16 12 C 0.03 0.75 5.50 -17.43 -0.10 0.66 16 13 N -0.87 -23.12 13.06 55.49 0.72 -22.39 16 14 Si 0.92 19.31 29.55 -169.99 -5.02 14.29 16 15 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 C -0.14 -1.73 2.78 -88.68 -0.25 -1.98 16 19 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 20 C -0.16 -1.62 4.80 -24.48 -0.12 -1.74 16 21 C 0.05 0.53 7.78 38.18 0.30 0.83 16 22 O -0.39 -5.21 11.36 -35.23 -0.40 -5.61 16 23 C 0.05 0.72 6.45 37.88 0.24 0.96 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.55 8.09 -51.93 -0.42 0.13 16 26 H 0.05 0.47 5.04 -51.93 -0.26 0.20 16 27 H 0.13 2.09 7.13 -51.92 -0.37 1.72 16 28 H 0.13 2.09 8.14 -51.93 -0.42 1.67 16 29 H 0.41 10.26 7.99 -34.47 -0.28 9.99 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 32 H 0.08 0.79 7.26 -51.93 -0.38 0.41 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.01 7.50 -51.93 -0.39 0.62 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -31.74 308.77 -6.73 -38.47 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.98 Total: 10.76 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 1.17 Total: -16.54 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.90 Total: -45.28 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -2.89 Total: -61.77 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 16 Polarization: 55.98 SS G_CDS: -0.56 Total: 55.42 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.74 -6.73 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261578770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.822 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds