Wall clock time and date at job start Tue Mar 31 2020 00:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99932 * 2 1 4 4 H 1.09006 * 109.47202 * 31.53577 * 3 2 1 5 5 C 1.52997 * 109.47402 * 271.52972 * 3 2 1 6 6 S 1.81393 * 109.47058 * 297.83551 * 5 3 2 7 7 O 1.42108 * 110.54219 * 283.72504 * 6 5 3 8 8 O 1.42096 * 110.54508 * 60.48009 * 6 5 3 9 9 N 1.65606 * 104.44861 * 172.10770 * 6 5 3 10 10 C 1.36932 * 120.00012 * 64.99807 * 9 6 5 11 11 H 1.07992 * 120.00426 * 0.02562 * 10 9 6 12 12 C 1.38813 * 119.99593 * 179.97438 * 10 9 6 13 13 N 1.31622 * 119.99961 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00124 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46699 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47133 * 119.99851 * 14 12 10 17 17 H 1.48495 * 109.47523 * 240.00533 * 14 12 10 18 18 C 1.53001 * 109.47143 * 151.52776 * 3 2 1 19 19 H 1.08997 * 110.45705 * 62.60509 * 18 3 2 20 20 C 1.54509 * 110.51291 * 300.00335 * 18 3 2 21 21 C 1.54479 * 104.06479 * 241.35463 * 20 18 3 22 22 O 1.44423 * 104.80009 * 336.01782 * 21 20 18 23 23 C 1.44427 * 105.27373 * 40.51728 * 22 21 20 24 24 H 1.09004 * 109.46657 * 55.43648 * 1 2 3 25 25 H 1.08994 * 109.47001 * 175.43330 * 1 2 3 26 26 H 1.09003 * 109.46849 * 295.43848 * 1 2 3 27 27 H 1.08997 * 109.47320 * 57.83643 * 5 3 2 28 28 H 1.09001 * 109.47213 * 177.83260 * 5 3 2 29 29 H 0.97004 * 119.99054 * 244.99497 * 9 6 5 30 30 H 0.97006 * 119.99530 * 179.97438 * 13 12 10 31 31 H 1.08997 * 110.51652 * 122.70602 * 20 18 3 32 32 H 1.09009 * 110.50805 * 359.97438 * 20 18 3 33 33 H 1.08997 * 110.37154 * 94.84936 * 21 20 18 34 34 H 1.09003 * 110.37059 * 217.18917 * 21 20 18 35 35 H 1.09001 * 110.36678 * 200.65724 * 23 22 21 36 36 H 1.08999 * 110.47107 * 78.36731 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3579 1.9937 0.5375 5 6 2.1826 1.7871 -1.4419 6 16 3.3190 0.6776 -2.3183 7 8 4.6625 0.9340 -1.9326 8 8 2.8037 -0.6464 -2.3426 9 7 3.2456 1.1736 -3.8966 10 6 3.6928 2.4203 -4.2440 11 1 4.0937 3.0801 -3.4889 12 6 3.6317 2.8357 -5.5672 13 7 3.1435 2.0314 -6.4876 14 14 4.2411 4.5368 -6.0412 15 1 4.7379 5.2395 -4.8309 16 1 5.3440 4.4104 -7.0274 17 1 3.1263 5.3124 -6.6418 18 6 3.3761 1.2556 0.6877 19 1 4.0567 0.6067 0.1365 20 6 3.2299 0.7715 2.1477 21 6 3.7499 1.9572 2.9903 22 8 4.6306 2.6815 2.1039 23 6 3.9672 2.6766 0.8209 24 1 -0.3633 0.5831 -0.8463 25 1 -0.3633 -1.0244 -0.0818 26 1 -0.3633 0.4414 0.9281 27 1 1.2148 1.7860 -1.9435 28 1 2.5901 2.7980 -1.4411 29 1 2.8859 0.5807 -4.5749 30 1 3.1005 2.3219 -7.4121 31 1 3.8400 -0.1154 2.3190 32 1 2.1844 0.5680 2.3796 33 1 2.9213 2.5920 3.3040 34 1 4.3002 1.5935 3.8580 35 1 4.6845 2.8655 0.0223 36 1 3.1721 3.4219 0.8000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261578771.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:10 Heat of formation + Delta-G solvation = -163.354989 kcal Electronic energy + Delta-G solvation = -21361.156155 eV Core-core repulsion = 17972.920494 eV Total energy + Delta-G solvation = -3388.235662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.75103 -37.73748 -35.86862 -34.76251 -34.61552 -33.22961 -30.98297 -30.56807 -28.09455 -26.72395 -24.53969 -23.48298 -22.30451 -20.45668 -18.27613 -18.06018 -17.30609 -16.40280 -16.16006 -16.13970 -15.10453 -14.97934 -14.72840 -14.56041 -14.47689 -14.35336 -13.52885 -13.35597 -12.80946 -12.43613 -12.17251 -11.96496 -11.54729 -11.45468 -11.33807 -11.19304 -11.05876 -11.00520 -10.87039 -10.80666 -10.53768 -10.50314 -10.25060 -10.00025 -9.76690 -9.71009 -9.44244 -8.28021 -6.49888 -3.92250 1.42204 3.14360 3.21077 3.23818 3.68764 3.94704 4.00038 4.30252 4.54794 4.74635 4.81606 4.91592 5.03069 5.08103 5.11439 5.18923 5.35109 5.36500 5.37978 5.46052 5.58839 5.68856 5.76341 5.79474 5.93400 5.97739 6.09190 6.14982 6.23423 6.80996 6.98357 7.19836 7.45987 8.64365 8.78530 9.21464 10.66106 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.006290 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.093751 B = 4450.472243 C = 5165.632324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.117 3.883 4 H 0.070 0.930 5 C -0.686 4.686 6 S 2.557 3.443 7 O -0.970 6.970 8 O -0.985 6.985 9 N -0.956 5.956 10 C -0.279 4.279 11 H 0.103 0.897 12 C 0.029 3.971 13 N -0.877 5.877 14 Si 0.922 3.078 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.280 1.280 18 C -0.145 4.145 19 H 0.102 0.898 20 C -0.142 4.142 21 C 0.041 3.959 22 O -0.371 6.371 23 C 0.053 3.947 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.038 0.962 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.409 0.591 30 H 0.274 0.726 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 1.551 13.053 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C 0.058 3.942 4 H 0.088 0.912 5 C -0.808 4.808 6 S 2.647 3.353 7 O -0.960 6.960 8 O -0.974 6.974 9 N -0.708 5.708 10 C -0.418 4.418 11 H 0.121 0.879 12 C -0.178 4.178 13 N -0.519 5.519 14 Si 0.749 3.251 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.206 1.206 18 C -0.164 4.164 19 H 0.120 0.880 20 C -0.180 4.180 21 C -0.036 4.036 22 O -0.290 6.290 23 C -0.024 4.024 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.056 0.944 27 H 0.140 0.860 28 H 0.146 0.854 29 H 0.245 0.755 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.285 0.845 13.563 14.248 hybrid contribution -1.027 1.339 -0.839 1.885 sum -5.312 2.184 12.723 13.960 Atomic orbital electron populations 1.22797 0.81053 1.03067 0.99625 1.88048 1.19789 1.26283 1.94760 1.21639 0.94245 0.85559 0.92764 0.91221 1.31484 1.20766 1.19806 1.08705 1.08526 0.76929 0.75821 0.73990 1.93481 1.32755 1.86701 1.83065 1.93439 1.81651 1.36460 1.85813 1.51774 1.71990 1.25013 1.21989 1.19360 1.35334 0.92258 0.94879 0.87924 1.25265 0.97472 0.99329 0.95779 1.69712 1.43826 1.36178 1.02161 0.85929 0.78539 0.81519 0.79157 1.19032 1.20379 1.20595 1.22978 0.96209 0.99460 0.97707 0.88011 1.22895 1.02602 0.99177 0.93297 1.23462 0.93792 0.92292 0.94025 1.89140 1.43627 1.76074 1.20158 1.23496 0.97669 0.94262 0.86987 0.93778 0.89311 0.94372 0.86017 0.85371 0.75540 0.91612 0.90103 0.90114 0.92529 0.89124 0.87159 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.79 101.05 1.09 1.48 16 2 O -0.37 -6.10 8.72 -47.40 -0.41 -6.51 16 3 C 0.12 1.81 1.67 -26.73 -0.04 1.77 16 4 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 5 C -0.69 -11.84 5.70 37.16 0.21 -11.63 16 6 S 2.56 56.46 4.53 -107.50 -0.49 55.97 16 7 O -0.97 -23.29 15.94 -57.54 -0.92 -24.21 16 8 O -0.98 -23.93 17.12 -63.37 -1.08 -25.01 16 9 N -0.96 -23.31 5.65 31.49 0.18 -23.13 16 10 C -0.28 -7.00 9.49 -15.06 -0.14 -7.14 16 11 H 0.10 2.40 7.82 -52.49 -0.41 1.99 16 12 C 0.03 0.73 5.50 -17.43 -0.10 0.64 16 13 N -0.88 -23.31 13.06 55.49 0.72 -22.58 16 14 Si 0.92 19.40 29.55 -169.99 -5.02 14.37 16 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 16 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 18 C -0.14 -2.29 2.45 -89.05 -0.22 -2.51 16 19 H 0.10 1.89 5.68 -51.93 -0.29 1.59 16 20 C -0.14 -1.81 6.51 -25.16 -0.16 -1.98 16 21 C 0.04 0.48 7.63 37.93 0.29 0.77 16 22 O -0.37 -5.66 11.65 -35.23 -0.41 -6.07 16 23 C 0.05 0.79 6.30 37.93 0.24 1.03 16 24 H 0.04 0.54 7.63 -51.93 -0.40 0.14 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.12 1.97 7.65 -51.93 -0.40 1.57 16 28 H 0.13 2.02 7.52 -51.92 -0.39 1.63 16 29 H 0.41 10.33 7.99 -34.47 -0.28 10.06 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.91 7.52 -51.92 -0.39 0.52 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.06 0.79 7.82 -51.93 -0.41 0.39 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -31.39 308.15 -6.66 -38.06 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.04 Total: 12.05 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 1.17 Total: -17.57 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.90 Total: -45.72 kcal Atomic # 8 Polarization: -58.98 SS G_CDS: -2.83 Total: -61.80 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: 56.46 SS G_CDS: -0.49 Total: 55.97 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.39 -6.66 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261578771.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.299 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds