Wall clock time and date at job start Tue Mar 31 2020 00:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99932 * 2 1 4 4 H 1.09006 * 109.47202 * 31.53577 * 3 2 1 5 5 C 1.52997 * 109.47402 * 271.52972 * 3 2 1 6 6 S 1.81393 * 109.47058 * 297.83551 * 5 3 2 7 7 O 1.42108 * 110.54219 * 283.72504 * 6 5 3 8 8 O 1.42096 * 110.54508 * 60.48009 * 6 5 3 9 9 N 1.65606 * 104.44861 * 172.10770 * 6 5 3 10 10 C 1.36932 * 120.00012 * 64.99807 * 9 6 5 11 11 H 1.07992 * 120.00426 * 0.02562 * 10 9 6 12 12 C 1.38813 * 119.99593 * 179.97438 * 10 9 6 13 13 N 1.31622 * 119.99961 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00124 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46699 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47133 * 119.99851 * 14 12 10 17 17 H 1.48495 * 109.47523 * 240.00533 * 14 12 10 18 18 C 1.53001 * 109.47143 * 151.52776 * 3 2 1 19 19 H 1.08997 * 110.45705 * 62.60509 * 18 3 2 20 20 C 1.54509 * 110.51291 * 300.00335 * 18 3 2 21 21 C 1.54479 * 104.06479 * 241.35463 * 20 18 3 22 22 O 1.44423 * 104.80009 * 336.01782 * 21 20 18 23 23 C 1.44427 * 105.27373 * 40.51728 * 22 21 20 24 24 H 1.09004 * 109.46657 * 55.43648 * 1 2 3 25 25 H 1.08994 * 109.47001 * 175.43330 * 1 2 3 26 26 H 1.09003 * 109.46849 * 295.43848 * 1 2 3 27 27 H 1.08997 * 109.47320 * 57.83643 * 5 3 2 28 28 H 1.09001 * 109.47213 * 177.83260 * 5 3 2 29 29 H 0.97004 * 119.99054 * 244.99497 * 9 6 5 30 30 H 0.97006 * 119.99530 * 179.97438 * 13 12 10 31 31 H 1.08997 * 110.51652 * 122.70602 * 20 18 3 32 32 H 1.09009 * 110.50805 * 359.97438 * 20 18 3 33 33 H 1.08997 * 110.37154 * 94.84936 * 21 20 18 34 34 H 1.09003 * 110.37059 * 217.18917 * 21 20 18 35 35 H 1.09001 * 110.36678 * 200.65724 * 23 22 21 36 36 H 1.08999 * 110.47107 * 78.36731 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3579 1.9937 0.5375 5 6 2.1826 1.7871 -1.4419 6 16 3.3190 0.6776 -2.3183 7 8 4.6625 0.9340 -1.9326 8 8 2.8037 -0.6464 -2.3426 9 7 3.2456 1.1736 -3.8966 10 6 3.6928 2.4203 -4.2440 11 1 4.0937 3.0801 -3.4889 12 6 3.6317 2.8357 -5.5672 13 7 3.1435 2.0314 -6.4876 14 14 4.2411 4.5368 -6.0412 15 1 4.7379 5.2395 -4.8309 16 1 5.3440 4.4104 -7.0274 17 1 3.1263 5.3124 -6.6418 18 6 3.3761 1.2556 0.6877 19 1 4.0567 0.6067 0.1365 20 6 3.2299 0.7715 2.1477 21 6 3.7499 1.9572 2.9903 22 8 4.6306 2.6815 2.1039 23 6 3.9672 2.6766 0.8209 24 1 -0.3633 0.5831 -0.8463 25 1 -0.3633 -1.0244 -0.0818 26 1 -0.3633 0.4414 0.9281 27 1 1.2148 1.7860 -1.9435 28 1 2.5901 2.7980 -1.4411 29 1 2.8859 0.5807 -4.5749 30 1 3.1005 2.3219 -7.4121 31 1 3.8400 -0.1154 2.3190 32 1 2.1844 0.5680 2.3796 33 1 2.9213 2.5920 3.3040 34 1 4.3002 1.5935 3.8580 35 1 4.6845 2.8655 0.0223 36 1 3.1721 3.4219 0.8000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261578771.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:09 Heat of formation + Delta-G solvation = -188.706808 kcal Electronic energy + Delta-G solvation = -21362.255493 eV Core-core repulsion = 17972.920494 eV Total energy + Delta-G solvation = -3389.334999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86668 -38.88773 -37.82585 -36.71562 -36.41423 -34.43431 -32.80474 -31.72432 -29.29250 -27.74659 -26.39832 -24.66335 -23.38849 -21.63706 -20.12091 -19.87425 -18.75878 -17.84415 -17.45390 -17.33337 -16.56267 -16.38902 -16.16687 -16.00704 -15.94809 -15.58829 -15.28235 -14.48470 -13.91135 -13.79191 -13.69245 -13.37936 -13.07846 -12.91414 -12.86472 -12.79364 -12.59223 -12.56467 -12.25031 -12.16963 -12.06345 -12.00760 -11.78115 -11.69172 -11.14662 -10.77901 -10.73632 -10.12638 -8.29040 -5.87309 -0.35868 1.47509 1.50675 1.61283 2.19849 2.53721 2.59535 2.95399 3.00276 3.23403 3.39657 3.47590 3.68450 3.87464 3.91399 4.09823 4.15810 4.30542 4.35139 4.40306 4.54645 4.56205 4.73488 4.79914 4.81872 4.87729 4.90703 5.05227 5.09173 5.10478 5.63819 5.80768 6.10721 6.75730 7.01641 7.35539 8.90266 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.006290 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.093751 B = 4450.472243 C = 5165.632324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.398 6.398 3 C 0.116 3.884 4 H 0.120 0.880 5 C -0.654 4.654 6 S 2.595 3.405 7 O -0.997 6.997 8 O -1.005 7.005 9 N -0.993 5.993 10 C -0.316 4.316 11 H 0.111 0.889 12 C -0.024 4.024 13 N -0.935 5.935 14 Si 0.982 3.018 15 H -0.253 1.253 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.157 4.157 19 H 0.064 0.936 20 C -0.138 4.138 21 C 0.039 3.961 22 O -0.395 6.395 23 C 0.050 3.950 24 H 0.047 0.953 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.400 0.600 30 H 0.270 0.730 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.837 2.915 16.393 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.317 6.317 3 C 0.056 3.944 4 H 0.137 0.863 5 C -0.784 4.784 6 S 2.690 3.310 7 O -0.987 6.987 8 O -0.995 6.995 9 N -0.744 5.744 10 C -0.449 4.449 11 H 0.129 0.871 12 C -0.224 4.224 13 N -0.578 5.578 14 Si 0.806 3.194 15 H -0.176 1.176 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.176 4.176 19 H 0.082 0.918 20 C -0.176 4.176 21 C -0.037 4.037 22 O -0.314 6.314 23 C -0.027 4.027 24 H 0.066 0.934 25 H 0.112 0.888 26 H 0.091 0.909 27 H 0.164 0.836 28 H 0.173 0.827 29 H 0.234 0.766 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.953 2.233 16.794 17.957 hybrid contribution -0.568 0.702 -1.410 1.674 sum -6.520 2.936 15.385 16.965 Atomic orbital electron populations 1.23115 0.79017 1.04130 1.01611 1.88047 1.22156 1.26712 1.94777 1.21830 0.95138 0.86548 0.90869 0.86254 1.31118 1.19112 1.18461 1.09730 1.05508 0.76539 0.75254 0.73715 1.93480 1.34973 1.86910 1.83383 1.93446 1.82178 1.37440 1.86398 1.51402 1.75289 1.24946 1.22772 1.19557 1.38016 0.91815 0.95513 0.87144 1.26025 0.97992 1.02755 0.95656 1.69825 1.47624 1.38156 1.02217 0.85032 0.77778 0.77728 0.78904 1.17623 1.21200 1.20029 1.23030 0.95675 0.99513 0.99416 0.91766 1.22911 1.03978 0.99428 0.91266 1.23711 0.94435 0.91927 0.93619 1.89117 1.45090 1.76656 1.20575 1.23515 0.97906 0.94520 0.86715 0.93448 0.88751 0.90912 0.83591 0.82740 0.76607 0.92088 0.90683 0.87941 0.89811 0.87431 0.89428 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.79 113.37 1.22 1.57 16 2 O -0.40 -11.58 8.72 -137.34 -1.20 -12.78 16 3 C 0.12 3.05 1.67 30.59 0.05 3.10 16 4 H 0.12 2.17 7.79 -2.38 -0.02 2.15 16 5 C -0.65 -20.24 5.70 71.98 0.41 -19.83 16 6 S 2.59 113.52 4.53 -56.49 -0.26 113.26 16 7 O -1.00 -48.35 15.94 -127.65 -2.03 -50.38 16 8 O -1.00 -48.64 17.12 -122.08 -2.09 -50.73 16 9 N -0.99 -49.68 5.65 -54.27 -0.31 -49.98 16 10 C -0.32 -16.25 9.49 84.03 0.80 -15.45 16 11 H 0.11 5.23 7.82 -2.91 -0.02 5.21 16 12 C -0.02 -1.25 5.50 84.86 0.47 -0.78 16 13 N -0.94 -52.37 13.06 21.65 0.28 -52.09 16 14 Si 0.98 40.80 29.55 68.60 2.03 42.83 16 15 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 16 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 C -0.16 -4.52 2.45 -9.78 -0.02 -4.54 16 19 H 0.06 2.33 5.68 -2.39 -0.01 2.31 16 20 C -0.14 -3.03 6.51 31.61 0.21 -2.82 16 21 C 0.04 0.75 7.63 72.48 0.55 1.31 16 22 O -0.40 -10.96 11.65 -148.98 -1.74 -12.69 16 23 C 0.05 1.37 6.30 72.48 0.46 1.82 16 24 H 0.05 0.94 7.63 -2.38 -0.02 0.92 16 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.15 4.07 7.65 -2.39 -0.02 4.06 16 28 H 0.15 4.21 7.52 -2.39 -0.02 4.19 16 29 H 0.40 21.24 7.99 -96.74 -0.77 20.47 16 30 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.10 1.79 7.52 -2.38 -0.02 1.77 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.09 1.91 7.82 -2.39 -0.02 1.90 16 Total: -1.00 -71.51 308.15 -0.85 -72.36 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.31 Total: 35.82 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 4.14 Total: -35.63 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -0.02 Total: -102.07 kcal Atomic # 8 Polarization: -119.52 SS G_CDS: -7.06 Total: -126.58 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 113.52 SS G_CDS: -0.26 Total: 113.26 kcal Total: -71.51 -0.85 -72.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261578771.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.345 kcal (2) G-P(sol) polarization free energy of solvation -71.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds