Wall clock time and date at job start Tue Mar 31 2020 01:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00062 * 2 1 4 4 H 1.48500 * 109.47122 * 269.99789 * 3 2 1 5 5 H 1.48496 * 109.47011 * 29.99563 * 3 2 1 6 6 H 1.48496 * 109.47385 * 149.99776 * 3 2 1 7 7 C 1.37882 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99939 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00023 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.47530 * 299.99751 * 9 7 2 11 11 O 1.42895 * 109.47561 * 60.00167 * 9 7 2 12 12 C 1.53002 * 109.47263 * 180.02562 * 9 7 2 13 13 N 1.46893 * 109.47507 * 177.17707 * 12 9 7 14 14 C 1.46902 * 111.00203 * 284.20749 * 13 12 9 15 15 C 1.53233 * 109.34604 * 172.74579 * 14 13 12 16 16 N 1.47077 * 108.51999 * 53.82482 * 15 14 13 17 17 S 1.65607 * 120.88075 * 128.84025 * 16 15 14 18 18 N 1.65597 * 107.21866 * 90.00159 * 17 16 15 19 19 O 1.42096 * 106.40080 * 203.54433 * 17 16 15 20 20 O 1.42108 * 106.39902 * 336.46164 * 17 16 15 21 21 C 1.47075 * 118.24271 * 308.81988 * 16 15 14 22 22 C 1.46896 * 111.00435 * 159.90490 * 13 12 9 23 23 H 0.97003 * 119.99911 * 0.02562 * 1 2 3 24 24 H 0.96702 * 114.00298 * 59.99363 * 11 9 7 25 25 H 1.08998 * 109.46940 * 57.17266 * 12 9 7 26 26 H 1.09002 * 109.46746 * 297.17955 * 12 9 7 27 27 H 1.09006 * 109.49481 * 52.78102 * 14 13 12 28 28 H 1.09003 * 109.51600 * 292.71953 * 14 13 12 29 29 H 1.08996 * 109.63512 * 173.54067 * 15 14 13 30 30 H 1.09001 * 109.62787 * 294.12164 * 15 14 13 31 31 H 0.97001 * 119.99875 * 0.02562 * 18 17 16 32 32 H 0.97000 * 120.00124 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.63011 * 291.47455 * 21 16 15 34 34 H 1.09004 * 109.63363 * 170.88940 * 21 16 15 35 35 H 1.09000 * 109.49325 * 307.21395 * 22 13 12 36 36 H 1.09004 * 109.49105 * 67.29205 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8753 -0.6804 -0.8889 11 8 3.9875 -0.5202 1.1679 12 6 4.0216 -2.6365 0.0010 13 7 5.4890 -2.6371 -0.0666 14 6 5.9536 -2.3223 -1.4242 15 6 7.4766 -2.1544 -1.4134 16 7 8.0749 -3.3571 -0.8145 17 16 9.2925 -4.1742 -1.5844 18 7 10.7237 -3.5158 -1.0740 19 8 9.2617 -5.5040 -1.0848 20 8 9.1760 -3.8598 -2.9653 21 6 7.5637 -3.8149 0.4863 22 6 6.0371 -3.9174 0.4006 23 1 -0.4850 0.8401 -0.0004 24 1 3.7018 -0.9235 1.9991 25 1 3.6178 -3.1646 -0.8628 26 1 3.6998 -3.1357 0.9150 27 1 5.4880 -1.3965 -1.7625 28 1 5.6820 -3.1338 -2.0994 29 1 7.8392 -2.0345 -2.4342 30 1 7.7443 -1.2790 -0.8216 31 1 10.7213 -2.7859 -0.4352 32 1 11.5644 -3.8601 -1.4139 33 1 7.8396 -3.0991 1.2606 34 1 7.9837 -4.7929 0.7213 35 1 5.6322 -4.1485 1.3858 36 1 5.7643 -4.7070 -0.2996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262244732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:00 Heat of formation + Delta-G solvation = -143.381142 kcal Electronic energy + Delta-G solvation = -20856.727097 eV Core-core repulsion = 17501.650318 eV Total energy + Delta-G solvation = -3355.076780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07882 -38.31678 -37.84662 -36.95055 -35.27880 -34.36656 -33.99855 -32.14809 -30.70834 -28.02898 -25.31137 -24.83178 -22.24201 -21.64486 -20.32801 -19.52226 -19.02431 -18.34669 -17.15078 -17.14440 -16.77038 -16.51078 -16.34406 -15.85922 -15.61021 -15.32971 -15.19135 -14.86893 -14.52220 -13.68835 -13.56127 -13.38831 -13.24013 -13.21944 -13.02376 -12.91298 -12.64618 -12.50575 -12.27032 -12.21020 -11.78828 -11.58007 -11.31720 -11.03506 -10.77740 -10.32878 -10.00984 -9.14394 -8.32815 -6.47755 -0.45496 1.43545 1.49264 1.79766 1.87108 2.47324 2.59647 2.94828 3.06469 3.50522 3.58708 4.03948 4.11123 4.16284 4.31672 4.34449 4.41969 4.51879 4.66077 4.72883 4.79056 4.93550 4.96101 5.03702 5.13016 5.31769 5.48840 5.50312 5.52240 6.08754 6.13447 6.22445 6.36970 6.65636 7.26631 7.43321 8.81576 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039809 B = 0.004219 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.197003 B = 6635.711646 C = 6838.295673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.027 3.973 3 Si 0.941 3.059 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.033 0.967 9 C 0.214 3.786 10 H 0.049 0.951 11 O -0.570 6.570 12 C 0.052 3.948 13 N -0.527 5.527 14 C 0.036 3.964 15 C 0.129 3.871 16 N -1.001 6.001 17 S 2.819 3.181 18 N -1.246 6.246 19 O -1.015 7.015 20 O -1.018 7.018 21 C 0.127 3.873 22 C 0.038 3.962 23 H 0.266 0.734 24 H 0.365 0.635 25 H 0.021 0.979 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.025 0.975 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.428 0.572 32 H 0.427 0.573 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.411 -5.297 1.331 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.172 4.172 3 Si 0.765 3.235 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.121 1.121 7 C -0.607 4.607 8 H 0.051 0.949 9 C 0.156 3.844 10 H 0.066 0.934 11 O -0.376 6.376 12 C -0.076 4.076 13 N -0.251 5.251 14 C -0.094 4.094 15 C 0.004 3.996 16 N -0.844 5.844 17 S 2.824 3.176 18 N -0.925 5.925 19 O -0.998 6.998 20 O -1.001 7.001 21 C 0.002 3.998 22 C -0.092 4.092 23 H 0.075 0.925 24 H 0.212 0.788 25 H 0.039 0.961 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.044 0.956 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.258 0.742 32 H 0.258 0.742 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 23.485 -5.302 0.496 24.081 hybrid contribution -0.980 -0.040 -0.116 0.988 sum 22.505 -5.342 0.380 23.133 Atomic orbital electron populations 1.70096 1.08669 1.28394 1.51072 1.25885 0.95220 1.03774 0.92328 0.85967 0.82141 0.77101 0.78318 1.21321 1.22714 1.12071 1.21899 0.92734 0.93174 1.52863 0.94887 1.19412 0.89660 0.89265 0.86080 0.93372 1.86587 1.77476 1.57208 1.16352 1.22537 0.86373 0.98423 1.00250 1.61885 1.08207 1.31645 1.23402 1.22514 0.96479 1.01035 0.89391 1.21621 0.91419 0.86968 0.99573 1.57634 1.51691 1.41783 1.33277 1.00636 0.72648 0.72163 0.72111 1.53098 1.24127 1.52860 1.62436 1.93581 1.86967 1.38092 1.81110 1.93587 1.86590 1.84814 1.35060 1.21708 0.92731 1.01635 0.83746 1.22559 0.95885 0.89513 1.01238 0.92525 0.78774 0.96098 0.90867 0.90025 0.95637 0.87993 0.88478 0.74239 0.74179 0.88259 0.87672 0.88370 0.95841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.25 13.96 21.45 0.30 -57.95 16 2 C 0.03 1.56 5.47 84.66 0.46 2.02 16 3 Si 0.94 44.21 26.99 68.60 1.85 46.06 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.20 -8.78 5.31 99.48 0.53 -8.25 16 7 C -0.57 -31.22 9.34 25.60 0.24 -30.98 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 9 C 0.21 9.38 2.39 29.85 0.07 9.45 16 10 H 0.05 2.17 6.17 -2.38 -0.01 2.16 16 11 O -0.57 -23.51 10.06 -148.98 -1.50 -25.00 16 12 C 0.05 1.91 4.59 86.31 0.40 2.31 16 13 N -0.53 -15.54 4.47 -895.26 -4.00 -19.54 16 14 C 0.04 0.99 5.45 86.38 0.47 1.46 16 15 C 0.13 2.66 6.66 86.35 0.58 3.24 16 16 N -1.00 -18.81 3.39 -512.19 -1.73 -20.55 16 17 S 2.82 54.07 6.75 -56.49 -0.38 53.69 16 18 N -1.25 -12.23 9.58 37.02 0.35 -11.88 16 19 O -1.01 -25.82 16.75 -128.00 -2.14 -27.96 16 20 O -1.02 -26.95 16.75 -128.00 -2.14 -29.09 16 21 C 0.13 2.27 6.66 86.35 0.58 2.85 16 22 C 0.04 0.89 5.59 86.38 0.48 1.38 16 23 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 24 H 0.37 13.39 9.04 -74.06 -0.67 12.72 16 25 H 0.02 0.82 8.00 -2.39 -0.02 0.80 16 26 H 0.07 2.59 7.77 -2.39 -0.02 2.57 16 27 H 0.08 2.44 6.65 -2.38 -0.02 2.42 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 1.97 6.93 -2.39 -0.02 1.96 16 30 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.43 2.19 8.96 -96.75 -0.87 1.32 16 32 H 0.43 2.91 8.96 -96.75 -0.87 2.05 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.11 1.69 6.93 -2.38 -0.02 1.67 16 35 H 0.10 2.09 7.90 -2.39 -0.02 2.07 16 36 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -76.44 300.55 -7.58 -84.02 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -1.45 Total: 16.48 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 3.27 Total: -8.28 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -5.08 Total: -109.91 kcal Atomic # 8 Polarization: -76.27 SS G_CDS: -5.79 Total: -82.06 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.85 Total: 46.06 kcal Atomic # 16 Polarization: 54.07 SS G_CDS: -0.38 Total: 53.69 kcal Total: -76.44 -7.58 -84.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262244732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.361 kcal (2) G-P(sol) polarization free energy of solvation -76.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds