Wall clock time and date at job start Tue Mar 31 2020 01:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 120.00290 * 2 1 4 4 H 1.48500 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47235 * 300.00058 * 3 2 1 6 6 H 1.48502 * 109.46971 * 59.99874 * 3 2 1 7 7 C 1.40048 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00504 * 180.02562 * 7 2 1 9 9 C 1.46379 * 119.99596 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00205 * 0.02562 * 9 7 2 11 11 N 1.34781 * 120.00051 * 180.02562 * 9 7 2 12 12 C 1.46499 * 120.00135 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47095 * 179.97438 * 12 11 9 14 14 N 1.46497 * 109.47216 * 179.97438 * 13 12 11 15 15 C 1.34739 * 120.00025 * 180.02562 * 14 13 12 16 16 O 1.34269 * 120.00251 * 5.49018 * 15 14 13 17 17 C 1.41524 * 119.99987 * 185.49094 * 15 14 13 18 18 N 1.33549 * 120.01935 * 189.99815 * 17 15 14 19 19 C 1.30903 * 121.63475 * 179.97438 * 18 17 15 20 20 C 1.39496 * 121.49507 * 0.02562 * 19 18 17 21 21 C 1.36521 * 119.85101 * 359.97438 * 20 19 18 22 22 C 1.40993 * 118.47057 * 359.74943 * 21 20 19 23 23 O 1.22429 * 120.70413 * 180.26798 * 22 21 20 24 24 H 0.97002 * 119.99602 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99448 * 359.97438 * 11 9 7 26 26 H 1.08994 * 109.47110 * 59.99673 * 12 11 9 27 27 H 1.08994 * 109.46724 * 299.99592 * 12 11 9 28 28 H 1.08994 * 109.46884 * 299.99914 * 13 12 11 29 29 H 1.09004 * 109.46567 * 59.99912 * 13 12 11 30 30 H 0.97006 * 119.99708 * 359.97438 * 14 13 12 31 31 H 0.96698 * 117.00275 * 180.02562 * 16 15 14 32 32 H 1.08001 * 119.25440 * 180.02562 * 19 18 17 33 33 H 1.07996 * 120.07717 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.76008 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8821 2.3964 -1.2124 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9488 -3.6478 0.0027 12 6 1.2163 -4.9164 0.0033 13 6 2.2105 -6.0794 0.0038 14 7 1.4780 -7.3481 0.0050 15 6 2.1517 -8.5150 0.0061 16 8 3.4898 -8.5176 0.1175 17 6 1.4490 -9.7379 -0.1100 18 7 2.0845 -10.8953 0.0901 19 6 1.4655 -12.0445 -0.0087 20 6 0.1097 -12.1168 -0.3288 21 6 -0.5994 -10.9705 -0.5459 22 6 0.0698 -9.7347 -0.4327 23 8 -0.5275 -8.6815 -0.6140 24 1 -0.4850 0.8401 0.0004 25 1 2.9189 -3.6477 0.0023 26 1 0.5900 -4.9747 -0.8868 27 1 0.5894 -4.9735 0.8931 28 1 2.8371 -6.0220 -0.8862 29 1 2.8372 -6.0212 0.8938 30 1 0.5080 -7.3480 0.0057 31 1 3.9290 -9.3791 0.1131 32 1 2.0169 -12.9574 0.1616 33 1 -0.3781 -13.0774 -0.4047 34 1 -1.6496 -11.0094 -0.7950 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293033332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:51 Heat of formation + Delta-G solvation = -60.432801 kcal Electronic energy + Delta-G solvation = -20459.648506 eV Core-core repulsion = 16972.724685 eV Total energy + Delta-G solvation = -3486.923821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20177 -39.26368 -37.79561 -37.23197 -36.12707 -33.59069 -32.51706 -32.21321 -30.17575 -28.60945 -26.33492 -24.75892 -23.08349 -22.51412 -22.31582 -19.90699 -19.00079 -17.83651 -17.50649 -16.80201 -16.32585 -16.26944 -15.58369 -15.33799 -15.01521 -14.85882 -14.42631 -14.23128 -13.93706 -13.45180 -13.03154 -12.88322 -12.61174 -12.45064 -12.39809 -11.65410 -11.53018 -11.20211 -11.03869 -10.65281 -10.56948 -10.52048 -10.27173 -9.65331 -8.98848 -8.94329 -7.76339 -7.74280 -7.57717 -6.28055 -4.74411 0.15496 1.78508 2.02145 2.14036 3.08183 3.15252 3.18778 3.21645 3.98109 4.02200 4.07405 4.48840 4.61433 4.68115 4.92927 4.93895 4.98571 5.05548 5.13606 5.28000 5.60460 5.66328 5.94750 6.13897 6.16088 6.19138 6.22737 6.43701 6.50388 7.16289 7.35063 7.73992 7.79033 7.87865 8.08742 8.20041 8.93226 9.35317 10.48573 10.66462 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.045989 B = 0.002880 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.700481 B = 9720.360710 C =10294.394979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.553 3.447 10 O -0.576 6.576 11 N -0.764 5.764 12 C 0.121 3.879 13 C 0.077 3.923 14 N -0.603 5.603 15 C 0.565 3.435 16 O -0.461 6.461 17 C -0.236 4.236 18 N -0.414 5.414 19 C 0.023 3.977 20 C -0.082 4.082 21 C -0.218 4.218 22 C 0.366 3.634 23 O -0.559 6.559 24 H 0.269 0.731 25 H 0.382 0.618 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.448 0.552 31 H 0.447 0.553 32 H 0.152 0.848 33 H 0.127 0.873 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 -20.359 0.463 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.358 3.642 10 O -0.458 6.458 11 N -0.422 5.422 12 C -0.005 4.005 13 C -0.046 4.046 14 N -0.245 5.245 15 C 0.376 3.624 16 O -0.261 6.261 17 C -0.362 4.362 18 N -0.124 5.124 19 C -0.157 4.157 20 C -0.102 4.102 21 C -0.245 4.245 22 C 0.267 3.733 23 O -0.453 6.453 24 H 0.080 0.920 25 H 0.214 0.786 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.307 0.693 31 H 0.309 0.691 32 H 0.169 0.831 33 H 0.145 0.855 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.507 -18.740 0.607 20.196 hybrid contribution -0.038 -0.172 -0.200 0.266 sum 7.468 -18.911 0.407 20.337 Atomic orbital electron populations 1.70024 1.07108 1.27398 1.34883 1.25732 0.94662 1.00433 0.92588 0.86274 0.80400 0.81546 0.78292 1.18748 1.20097 1.20108 1.20875 0.93641 0.89078 1.54428 0.91202 1.18295 0.87271 0.82175 0.76479 1.90629 1.14046 1.86506 1.54657 1.46062 1.08615 1.04051 1.83477 1.20935 0.93615 0.83486 1.02483 1.22289 0.96168 0.81834 1.04291 1.45938 1.13950 1.03063 1.61535 1.19331 0.81065 0.86277 0.75751 1.83813 1.16019 1.42274 1.83948 1.19318 0.95570 0.90077 1.31195 1.66673 1.39432 0.97898 1.08442 1.22068 0.92599 0.94369 1.06660 1.21962 0.95354 0.98944 0.93952 1.22655 1.01552 0.93612 1.06668 1.17400 0.87653 0.90250 0.77976 1.90490 1.69139 1.33467 1.52233 0.91984 0.78573 0.91896 0.92127 0.89050 0.89046 0.69321 0.69051 0.83065 0.85534 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.65 11.83 55.55 0.66 -21.99 16 2 C 0.09 2.35 5.50 -17.37 -0.10 2.25 16 3 Si 0.91 19.63 29.56 -169.99 -5.02 14.61 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.54 -14.84 9.54 -35.63 -0.34 -15.18 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 9 C 0.55 15.22 7.75 -12.98 -0.10 15.12 16 10 O -0.58 -18.37 15.02 5.20 0.08 -18.29 16 11 N -0.76 -15.74 5.55 -61.72 -0.34 -16.09 16 12 C 0.12 2.10 5.79 -4.04 -0.02 2.07 16 13 C 0.08 0.93 5.80 -4.04 -0.02 0.91 16 14 N -0.60 -7.47 5.31 -60.41 -0.32 -7.79 16 15 C 0.57 6.28 7.80 -15.02 -0.12 6.17 16 16 O -0.46 -3.63 12.69 -14.67 -0.19 -3.81 16 17 C -0.24 -3.00 6.61 -84.57 -0.56 -3.56 16 18 N -0.41 -4.54 9.33 -10.77 -0.10 -4.64 16 19 C 0.02 0.22 11.17 -17.48 -0.20 0.02 16 20 C -0.08 -0.79 10.04 -39.73 -0.40 -1.19 16 21 C -0.22 -2.76 10.09 -39.16 -0.40 -3.16 16 22 C 0.37 5.51 6.72 -37.24 -0.25 5.26 16 23 O -0.56 -9.86 14.44 4.52 0.07 -9.80 16 24 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 25 H 0.38 6.59 8.45 -40.82 -0.35 6.25 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.45 6.47 5.15 -40.86 -0.21 6.26 16 31 H 0.45 2.02 8.12 45.56 0.37 2.39 16 32 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 306.45 15.07 4.62 4.62 Total: -1.00 -36.92 306.45 -5.75 -42.66 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -2.69 Total: 11.81 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -2.50 Total: 8.72 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.11 Total: -50.51 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.04 Total: -31.90 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.92 -5.75 -42.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293033332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.772 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds