Wall clock time and date at job start Tue Mar 31 2020 00:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35597 * 117.00273 * 2 1 4 4 C 1.38429 * 120.19995 * 359.72606 * 3 2 1 5 5 C 1.38738 * 119.93345 * 179.76962 * 4 3 2 6 6 O 1.35661 * 119.83361 * 180.23077 * 5 4 3 7 7 C 1.42898 * 117.00031 * 180.25168 * 6 5 4 8 8 C 1.50703 * 109.47316 * 180.02562 * 7 6 5 9 9 O 1.21289 * 119.99814 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00198 * 180.02562 * 8 7 6 11 11 C 1.37099 * 120.00078 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99839 * 359.97438 * 11 10 8 13 13 C 1.38947 * 120.00256 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00218 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99676 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.46885 * 90.00459 * 15 13 11 17 17 H 1.48497 * 109.46945 * 210.00261 * 15 13 11 18 18 H 1.48498 * 109.47373 * 330.00372 * 15 13 11 19 19 C 1.39279 * 120.33494 * 0.48692 * 5 4 3 20 20 C 1.36430 * 120.40433 * 359.76920 * 19 5 4 21 21 C 1.40174 * 120.06010 * 359.97438 * 20 19 5 22 22 C 1.46492 * 120.16703 * 179.97438 * 21 20 19 23 23 O 1.21333 * 119.99775 * 0.02747 * 22 21 20 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99941 * 1 2 3 26 26 H 1.09004 * 109.46926 * 300.00062 * 1 2 3 27 27 H 1.07998 * 120.03174 * 359.97438 * 4 3 2 28 28 H 1.09006 * 109.47137 * 299.99863 * 7 6 5 29 29 H 1.08996 * 109.47596 * 60.00540 * 7 6 5 30 30 H 0.97001 * 119.99643 * 359.97438 * 10 8 7 31 31 H 0.97002 * 119.99870 * 179.97438 * 14 13 11 32 32 H 1.07994 * 119.80247 * 179.74946 * 19 5 4 33 33 H 1.08000 * 119.97059 * 179.97438 * 20 19 5 34 34 H 1.08000 * 119.99704 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2949 2.3718 -0.0057 5 6 1.9305 3.6050 -0.0009 6 8 1.1937 4.7440 -0.0017 7 6 1.9104 5.9803 -0.0021 8 6 0.9331 7.1275 -0.0025 9 8 -0.2598 6.9080 -0.0019 10 7 1.3846 8.3974 -0.0034 11 6 0.4956 9.4411 -0.0032 12 1 -0.5666 9.2456 -0.0027 13 6 0.9610 10.7503 -0.0047 14 7 0.1089 11.7506 -0.0050 15 14 2.7982 11.0883 -0.0062 16 1 3.2840 11.1767 -1.4067 17 1 3.0661 12.3709 0.6925 18 1 3.5050 9.9860 0.6942 19 6 3.3213 3.6795 -0.0004 20 6 4.0737 2.5414 -0.0001 21 6 3.4490 1.2866 0.0004 22 6 4.2546 0.0631 0.0003 23 8 5.4659 0.1344 0.0002 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2162 2.3197 -0.0106 28 1 2.5368 6.0374 0.8881 29 1 2.5374 6.0366 -0.8919 30 1 2.3386 8.5729 -0.0035 31 1 0.4338 12.6646 -0.0056 32 1 3.8071 4.6440 -0.0007 33 1 5.1517 2.6074 -0.0002 34 1 3.7704 -0.9022 0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318611341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:45 Heat of formation + Delta-G solvation = -134.420624 kcal Electronic energy + Delta-G solvation = -20509.272841 eV Core-core repulsion = 16986.847916 eV Total energy + Delta-G solvation = -3522.424925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82976 -40.75694 -39.70196 -39.65463 -37.33684 -36.10433 -33.87978 -32.16064 -31.47065 -29.83702 -28.21097 -26.54916 -25.38352 -23.32460 -22.03654 -21.48073 -20.51555 -19.90053 -18.29923 -17.97469 -17.42397 -17.31492 -17.08175 -16.89241 -16.76856 -16.04375 -15.69298 -15.32695 -15.21972 -15.07634 -15.00812 -14.53159 -14.17099 -13.81724 -13.75993 -13.48615 -13.01209 -12.63155 -12.49215 -12.45355 -12.21393 -11.98852 -11.73085 -11.58856 -10.73756 -10.59576 -10.34864 -9.78494 -9.26028 -8.46458 -6.10318 -0.34674 0.29493 1.29963 1.34570 1.44459 1.46398 1.64951 1.76975 2.14708 2.20980 2.69104 2.96788 3.08290 3.43392 3.58351 3.81380 3.92542 4.05379 4.10895 4.16018 4.22896 4.38980 4.40008 4.55587 4.59172 4.78883 4.85144 5.14070 5.29013 5.37699 5.46899 5.84375 6.05577 6.23042 6.50211 6.53407 6.77300 7.25596 7.79192 8.70438 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.003413 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.826572 B = 8201.997180 C = 9154.376287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.308 6.308 3 C 0.226 3.774 4 C -0.272 4.272 5 C 0.193 3.807 6 O -0.308 6.308 7 C 0.056 3.944 8 C 0.445 3.555 9 O -0.615 6.615 10 N -0.574 5.574 11 C -0.336 4.336 12 H 0.057 0.943 13 C -0.010 4.010 14 N -0.928 5.928 15 Si 0.964 3.036 16 H -0.254 1.254 17 H -0.274 1.274 18 H -0.225 1.225 19 C -0.258 4.258 20 C 0.017 3.983 21 C -0.282 4.282 22 C 0.404 3.596 23 O -0.511 6.511 24 H 0.133 0.867 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.147 0.853 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.395 0.605 31 H 0.282 0.718 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.263 -21.860 0.031 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.220 6.220 3 C 0.178 3.822 4 C -0.292 4.292 5 C 0.146 3.854 6 O -0.219 6.219 7 C -0.021 4.021 8 C 0.232 3.768 9 O -0.500 6.500 10 N -0.216 5.216 11 C -0.465 4.465 12 H 0.075 0.925 13 C -0.209 4.209 14 N -0.568 5.568 15 Si 0.783 3.217 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.148 1.148 19 C -0.277 4.277 20 C -0.001 4.001 21 C -0.284 4.284 22 C 0.267 3.733 23 O -0.389 6.389 24 H 0.151 0.849 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.165 0.835 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.231 0.769 31 H 0.092 0.908 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.888 -21.926 0.032 24.052 hybrid contribution -0.063 1.229 0.000 1.230 sum 9.825 -20.697 0.032 22.911 Atomic orbital electron populations 1.23503 0.75614 1.06383 1.02548 1.85980 1.23969 1.25211 1.86792 1.18780 0.90759 0.84028 0.88635 1.20535 1.01690 0.89502 1.17433 1.19366 0.90718 0.85780 0.89534 1.86105 1.36080 1.12816 1.86901 1.22576 0.93061 0.79968 1.06531 1.20353 0.89442 0.84213 0.82755 1.90589 1.19292 1.84854 1.55300 1.41776 1.08655 1.04375 1.66805 1.18992 0.90683 0.85520 1.51277 0.92532 1.26152 1.05457 0.93862 0.95462 1.69792 1.37754 1.00134 1.49080 0.85381 0.76088 0.79995 0.80208 1.17874 1.19951 1.14841 1.21195 0.91562 1.01646 1.13272 1.20975 1.01022 0.89841 0.88305 1.20318 0.91011 0.97526 1.19524 1.23936 0.87705 0.93630 0.68004 1.90514 1.18768 1.91021 1.38561 0.84892 0.91765 0.91764 0.83494 0.85894 0.85801 0.76862 0.90830 0.82258 0.82936 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.31 -4.85 9.68 -89.07 -0.86 -5.71 16 3 C 0.23 4.51 6.71 22.90 0.15 4.66 16 4 C -0.27 -6.31 8.97 22.43 0.20 -6.11 16 5 C 0.19 4.99 6.69 22.64 0.15 5.14 16 6 O -0.31 -10.04 9.65 -70.73 -0.68 -10.72 16 7 C 0.06 1.64 5.21 71.24 0.37 2.01 16 8 C 0.45 19.69 7.86 87.66 0.69 20.38 16 9 O -0.62 -34.71 16.07 15.98 0.26 -34.46 16 10 N -0.57 -25.79 5.09 -306.98 -1.56 -27.35 16 11 C -0.34 -19.11 10.16 84.04 0.85 -18.26 16 12 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 13 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 14 N -0.93 -54.39 13.96 21.66 0.30 -54.08 16 15 Si 0.96 36.45 27.74 68.60 1.90 38.35 16 16 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 17 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 18 H -0.23 -6.91 6.52 99.48 0.65 -6.26 16 19 C -0.26 -5.32 8.96 22.10 0.20 -5.12 16 20 C 0.02 0.33 9.53 22.32 0.21 0.55 16 21 C -0.28 -5.72 5.88 -20.07 -0.12 -5.83 16 22 C 0.40 7.64 11.18 69.97 0.78 8.42 16 23 O -0.51 -13.00 17.15 -3.20 -0.05 -13.05 16 24 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.68 7.65 -2.39 -0.02 0.66 16 26 H 0.06 0.68 7.68 -2.38 -0.02 0.66 16 27 H 0.15 3.22 6.30 -2.91 -0.02 3.20 16 28 H 0.12 2.66 7.65 -2.38 -0.02 2.64 16 29 H 0.12 2.66 7.65 -2.39 -0.02 2.64 16 30 H 0.39 14.01 5.76 -92.71 -0.53 13.48 16 31 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.16 2.47 6.26 -2.91 -0.02 2.45 16 33 H 0.15 2.67 7.64 -2.91 -0.02 2.65 16 34 H 0.13 1.67 7.63 -2.91 -0.02 1.65 16 Total: -1.00 -80.51 304.58 4.94 -75.57 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.56 Total: 24.41 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.07 Total: 7.04 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -1.26 Total: -81.43 kcal Atomic # 8 Polarization: -62.60 SS G_CDS: -1.34 Total: -63.94 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 1.90 Total: 38.35 kcal Total: -80.51 4.94 -75.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318611341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.850 kcal (2) G-P(sol) polarization free energy of solvation -80.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds