Wall clock time and date at job start Tue Mar 31 2020 00:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35044 * 126.39612 * 2 1 4 4 N 1.30501 * 108.70206 * 180.26584 * 3 2 1 5 5 C 1.34134 * 109.25346 * 359.77328 * 4 3 2 6 6 C 1.34668 * 108.02046 * 359.97438 * 5 4 3 7 7 C 1.50705 * 126.59171 * 179.97438 * 6 5 4 8 8 S 1.80995 * 109.46705 * 90.02984 * 7 6 5 9 9 C 1.76205 * 99.99991 * 180.02562 * 8 7 6 10 10 N 1.32393 * 126.25643 * 0.02562 * 9 8 7 11 11 N 1.28514 * 110.20061 * 179.97438 * 10 9 8 12 12 C 1.33092 * 109.74691 * 0.02562 * 11 10 9 13 13 C 1.39783 * 126.56054 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99560 * 180.02562 * 13 12 11 15 15 C 1.40081 * 120.00220 * 0.02562 * 13 12 11 16 16 N 1.30811 * 119.99623 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99903 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47207 * 89.99814 * 17 15 13 19 19 H 1.48502 * 109.47016 * 209.99633 * 17 15 13 20 20 H 1.48495 * 109.47201 * 329.99526 * 17 15 13 21 21 N 1.36674 * 126.26068 * 179.97438 * 9 8 7 22 22 C 1.46496 * 127.14869 * 0.02562 * 21 9 8 23 23 H 1.09005 * 109.47041 * 270.11575 * 1 2 3 24 24 H 1.08999 * 109.47326 * 30.11843 * 1 2 3 25 25 H 1.09004 * 109.46542 * 150.12301 * 1 2 3 26 26 H 1.08003 * 125.64997 * 0.07599 * 3 2 1 27 27 H 1.07998 * 125.99050 * 180.02562 * 5 4 3 28 28 H 1.08996 * 109.46659 * 330.03254 * 7 6 5 29 29 H 1.09001 * 109.47127 * 210.02841 * 7 6 5 30 30 H 0.97002 * 119.99556 * 179.97438 * 16 15 13 31 31 H 1.09001 * 109.47442 * 270.04566 * 22 21 9 32 32 H 1.08998 * 109.47226 * 30.05058 * 22 21 9 33 33 H 1.09007 * 109.46812 * 150.04918 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6904 -0.0057 5 6 3.5461 -0.6505 -0.0046 6 6 2.2773 -1.1018 0.0027 7 6 1.8364 -2.5429 0.0061 8 16 1.6686 -3.1184 1.7138 9 6 1.1594 -4.7808 1.4278 10 7 0.9797 -5.3526 0.2473 11 7 0.6078 -6.5735 0.3976 12 6 0.5249 -6.8620 1.6942 13 6 0.1524 -8.0883 2.2522 14 1 0.1205 -8.2057 3.3254 15 6 -0.1793 -9.1649 1.4196 16 7 -0.1410 -9.0223 0.1198 17 14 -0.6777 -10.8034 2.1654 18 1 -2.1486 -10.8283 2.3674 19 1 -0.2852 -11.9041 1.2491 20 1 0.0045 -10.9803 3.4724 21 7 0.8786 -5.7161 2.3841 22 6 0.9389 -5.5412 3.8373 23 1 -0.3633 0.0021 1.0277 24 1 -0.3634 0.8889 -0.5157 25 1 -0.3632 -0.8911 -0.5120 26 1 1.9334 2.1145 0.0012 27 1 4.4369 -1.2611 -0.0079 28 1 2.5786 -3.1510 -0.5110 29 1 0.8765 -2.6303 -0.5029 30 1 -0.3704 -9.7679 -0.4567 31 1 1.9370 -5.7969 4.1930 32 1 0.7186 -4.5036 4.0878 33 1 0.2058 -6.1932 4.3124 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326862866.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:50 Heat of formation + Delta-G solvation = 130.759574 kcal Electronic energy + Delta-G solvation = -18558.394794 eV Core-core repulsion = 15554.807319 eV Total energy + Delta-G solvation = -3003.587475 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.09469 -40.55003 -34.11073 -33.73970 -33.37911 -31.95231 -29.37235 -27.10577 -26.78311 -26.33768 -25.43577 -21.46056 -20.94577 -20.69533 -19.88372 -17.43944 -17.11704 -16.24603 -15.83766 -15.41847 -14.89919 -14.62360 -14.49879 -13.96499 -13.56080 -13.33621 -13.02991 -12.90008 -12.84487 -12.55015 -12.30570 -12.24751 -11.44356 -11.33498 -10.97830 -10.52515 -10.39224 -10.01483 -9.77864 -9.65831 -9.60236 -8.75457 -8.48749 -8.47066 -8.29408 -6.90530 -6.68853 -4.61949 1.48334 2.41111 2.71461 2.78064 2.88440 3.03931 3.07498 3.23054 3.31664 3.84069 4.19546 4.37807 4.55312 4.61437 4.67210 4.99547 5.07605 5.28270 5.28358 5.42490 5.50989 5.75702 5.85161 5.87607 6.00913 6.29556 6.68118 6.72522 6.84800 7.12219 7.20037 7.44162 7.84015 8.01860 8.13597 8.66086 8.81289 10.23633 10.58530 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.042788 B = 0.003733 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.228685 B = 7499.739837 C = 7689.078495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.454 5.454 3 C 0.181 3.819 4 N -0.495 5.495 5 C -0.005 4.005 6 C -0.009 4.009 7 C -0.015 4.015 8 S -0.045 6.045 9 C 0.042 3.958 10 N -0.286 5.286 11 N -0.333 5.333 12 C 0.347 3.653 13 C -0.447 4.447 14 H 0.084 0.916 15 C 0.078 3.922 16 N -0.736 5.736 17 Si 0.921 3.079 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.262 1.262 21 N -0.515 5.515 22 C 0.102 3.898 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.205 0.795 27 H 0.173 0.827 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.280 0.720 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 12.815 3.065 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.137 5.137 3 C -0.101 4.101 4 N -0.213 5.213 5 C -0.156 4.156 6 C -0.125 4.125 7 C -0.165 4.165 8 S 0.184 5.816 9 C -0.330 4.330 10 N -0.133 5.133 11 N -0.180 5.180 12 C 0.103 3.897 13 C -0.487 4.487 14 H 0.102 0.898 15 C -0.147 4.147 16 N -0.360 5.360 17 Si 0.745 3.255 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.186 1.186 21 N -0.217 5.217 22 C -0.043 4.043 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.221 0.779 27 H 0.190 0.810 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.091 13.639 2.331 13.837 hybrid contribution -1.240 -1.887 0.712 2.367 sum -1.149 11.752 3.043 12.194 Atomic orbital electron populations 1.22102 0.76402 1.04747 1.04120 1.45264 1.07761 1.06521 1.54195 1.24911 0.85710 0.93317 1.06190 1.70302 1.19373 1.11884 1.19762 1.22133 0.95699 0.90975 1.06790 1.20568 0.91376 0.88307 1.12251 1.21521 1.06452 0.90863 0.97649 1.84706 1.86854 1.00875 1.09180 1.25367 1.20807 0.96934 0.89854 1.74526 1.14803 1.04742 1.19181 1.75455 1.27129 1.03374 1.12084 1.21625 0.94142 0.86691 0.87275 1.18119 1.44092 0.92097 0.94431 0.89766 1.25798 0.93929 1.00445 0.94558 1.70007 1.30309 1.32033 1.03662 0.86113 0.79492 0.80167 0.79752 1.19371 1.19946 1.18618 1.46028 1.59287 1.10734 1.05666 1.21492 1.02087 1.01726 0.79030 0.90052 0.89404 0.89307 0.77853 0.81010 0.86845 0.88636 0.90938 0.92478 0.91628 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 11.01 59.85 0.66 1.22 16 2 N -0.45 -5.27 3.15 -121.36 -0.38 -5.65 16 3 C 0.18 2.05 12.56 -90.37 -1.14 0.91 16 4 N -0.50 -7.09 11.25 -14.66 -0.16 -7.25 16 5 C 0.00 -0.07 11.79 -17.81 -0.21 -0.28 16 6 C -0.01 -0.13 6.21 -81.60 -0.51 -0.64 16 7 C -0.02 -0.24 5.52 36.01 0.20 -0.04 16 8 S -0.04 -0.79 21.77 -107.50 -2.34 -3.13 16 9 C 0.04 0.99 8.09 -87.27 -0.71 0.28 16 10 N -0.29 -7.70 11.62 30.90 0.36 -7.34 16 11 N -0.33 -9.88 10.48 31.26 0.33 -9.56 16 12 C 0.35 9.59 7.53 -154.82 -1.17 8.43 16 13 C -0.45 -11.72 9.05 -38.31 -0.35 -12.07 16 14 H 0.08 2.00 7.30 -52.48 -0.38 1.61 16 15 C 0.08 1.98 5.50 -17.30 -0.10 1.88 16 16 N -0.74 -20.01 11.94 55.56 0.66 -19.35 16 17 Si 0.92 18.27 29.56 -169.99 -5.03 13.25 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 21 N -0.51 -12.29 3.26 -123.18 -0.40 -12.70 16 22 C 0.10 1.84 10.88 59.84 0.65 2.49 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.79 7.19 -51.93 -0.37 0.42 16 26 H 0.20 1.42 8.06 -52.48 -0.42 0.99 16 27 H 0.17 2.23 8.06 -52.49 -0.42 1.80 16 28 H 0.11 1.88 8.14 -51.92 -0.42 1.45 16 29 H 0.10 1.53 7.21 -51.92 -0.37 1.16 16 30 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.04 7.85 -51.93 -0.41 0.64 16 33 H 0.08 1.33 7.52 -51.93 -0.39 0.93 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -34.45 306.52 -8.60 -43.05 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -3.60 Total: 1.86 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.66 Total: 2.20 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: 0.40 Total: -61.84 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.34 Total: -3.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.45 -8.60 -43.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326862866.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.810 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds