Wall clock time and date at job start Tue Mar 31 2020 01:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31358 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48493 * 109.47142 * 270.00618 * 3 2 1 5 5 H 1.48503 * 109.46952 * 30.00274 * 3 2 1 6 6 H 1.48501 * 109.47071 * 150.00162 * 3 2 1 7 7 C 1.38901 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00087 * 0.02562 * 7 2 1 9 9 O 1.34780 * 119.99956 * 179.97438 * 7 2 1 10 10 C 1.34652 * 116.99741 * 180.02562 * 9 7 2 11 11 O 1.21440 * 120.00373 * 0.02562 * 10 9 7 12 12 C 1.48261 * 119.99490 * 180.02562 * 10 9 7 13 13 C 1.39617 * 120.50932 * 180.02562 * 12 10 9 14 14 C 1.38735 * 118.41468 * 179.97438 * 13 12 10 15 15 N 1.32157 * 119.25523 * 359.97438 * 14 13 12 16 16 C 1.32581 * 120.97842 * 0.02562 * 15 14 13 17 17 N 1.38428 * 119.13021 * 180.02562 * 16 15 14 18 18 C 1.47020 * 111.00023 * 123.63158 * 17 16 15 19 19 C 1.53104 * 109.25503 * 177.60510 * 18 17 16 20 20 O 1.43016 * 109.26002 * 56.84801 * 19 18 17 21 21 C 1.43016 * 113.73700 * 301.32863 * 20 19 18 22 22 C 1.47014 * 111.00204 * 359.97438 * 17 16 15 23 23 N 1.32270 * 121.73436 * 359.97197 * 16 15 14 24 24 H 0.96995 * 119.99873 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.79508 * 0.24574 * 13 12 10 26 26 H 1.08005 * 120.37193 * 180.02562 * 14 13 12 27 27 H 1.08992 * 109.50443 * 297.53799 * 18 17 16 28 28 H 1.08993 * 109.50483 * 57.67124 * 18 17 16 29 29 H 1.08996 * 109.50591 * 296.91192 * 19 18 17 30 30 H 1.08997 * 109.53642 * 176.80623 * 19 18 17 31 31 H 1.08994 * 109.50898 * 298.73458 * 21 20 19 32 32 H 1.09006 * 109.53848 * 178.62529 * 21 20 19 33 33 H 1.08996 * 109.50650 * 302.32920 * 22 17 16 34 34 H 1.09002 * 109.50537 * 62.41949 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4950 2.0464 -1.4000 5 1 1.4450 2.6526 0.7001 6 1 3.5452 1.4401 0.7000 7 6 2.0081 -1.2029 -0.0005 8 1 1.4681 -2.1382 -0.0014 9 8 3.3559 -1.2029 -0.0011 10 6 3.9671 -2.4027 -0.0021 11 8 3.3057 -3.4212 -0.0030 12 6 5.4477 -2.4802 -0.0022 13 6 6.0926 -3.7185 -0.0038 14 6 7.4798 -3.7404 -0.0043 15 7 8.1438 -2.5977 -0.0038 16 6 7.5038 -1.4366 -0.0023 17 7 8.2374 -0.2627 -0.0023 18 6 7.8708 0.5877 -1.1441 19 6 8.6604 1.8975 -1.0722 20 8 10.0597 1.6037 -1.0433 21 6 10.4519 0.7777 0.0564 22 6 9.6806 -0.5434 -0.0035 23 7 6.1827 -1.3703 -0.0017 24 1 -0.4850 0.8400 0.0004 25 1 5.5252 -4.6375 -0.0090 26 1 8.0111 -4.6807 -0.0059 27 1 8.1075 0.0706 -2.0739 28 1 6.8031 0.8040 -1.1087 29 1 8.3836 2.4402 -0.1684 30 1 8.4345 2.5077 -1.9467 31 1 10.2273 1.2879 0.9931 32 1 11.5219 0.5775 -0.0015 33 1 9.9336 -1.1525 0.8641 34 1 9.9463 -1.0794 -0.9147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328891635.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:58 Heat of formation + Delta-G solvation = -39.943530 kcal Electronic energy + Delta-G solvation = -21568.550944 eV Core-core repulsion = 18082.515605 eV Total energy + Delta-G solvation = -3486.035340 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31015 -39.60865 -38.94257 -36.09818 -35.43837 -33.79342 -32.52269 -31.40743 -31.20112 -27.42407 -26.66770 -25.02763 -23.83839 -23.19579 -21.26376 -20.26015 -18.23579 -18.13383 -17.68737 -16.57597 -16.22827 -15.70909 -15.57439 -15.31947 -15.01231 -14.93419 -14.78536 -14.58077 -13.98056 -13.83130 -13.70303 -12.63012 -12.54816 -12.24269 -11.73533 -11.63998 -11.49399 -11.03389 -10.89117 -10.78074 -10.60130 -10.48120 -10.25498 -9.87831 -9.82671 -9.65166 -9.08221 -8.84662 -8.49019 -6.59193 -4.26466 0.67626 1.05750 2.88020 3.08596 3.16974 3.26706 3.39065 3.63004 3.66325 4.02403 4.09792 4.15421 4.57294 4.65279 4.81252 4.92189 4.94472 4.97289 5.02360 5.09481 5.21740 5.39188 5.44811 5.47219 5.65907 5.72372 5.75706 6.05070 6.25235 6.44438 6.67058 6.88298 7.14941 7.50417 7.81512 8.11013 8.42085 8.77599 9.49058 10.46630 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.005936 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.211203 B = 4715.628908 C = 6236.479345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.249 1.249 7 C -0.370 4.370 8 H 0.115 0.885 9 O -0.210 6.210 10 C 0.438 3.562 11 O -0.528 6.528 12 C 0.207 3.793 13 C -0.209 4.209 14 C 0.169 3.831 15 N -0.550 5.550 16 C 0.484 3.516 17 N -0.459 5.459 18 C 0.026 3.974 19 C 0.064 3.936 20 O -0.386 6.386 21 C 0.061 3.939 22 C 0.035 3.965 23 N -0.492 5.492 24 H 0.285 0.715 25 H 0.160 0.840 26 H 0.175 0.825 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.549 0.626 -1.050 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.173 1.173 7 C -0.445 4.445 8 H 0.132 0.868 9 O -0.115 6.115 10 C 0.284 3.716 11 O -0.424 6.424 12 C 0.060 3.940 13 C -0.233 4.233 14 C 0.002 3.998 15 N -0.271 5.271 16 C 0.128 3.872 17 N -0.180 5.180 18 C -0.100 4.100 19 C -0.013 4.013 20 O -0.304 6.304 21 C -0.016 4.016 22 C -0.093 4.093 23 N -0.213 5.213 24 H 0.095 0.905 25 H 0.178 0.822 26 H 0.192 0.808 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.696 1.762 -0.764 19.790 hybrid contribution -0.467 -0.680 -0.271 0.868 sum 19.229 1.082 -1.035 19.288 Atomic orbital electron populations 1.69562 1.05965 1.29204 1.44199 1.24650 0.95049 0.99195 0.94855 0.86200 0.80927 0.80673 0.79442 1.19502 1.20502 1.17280 1.20893 0.76168 0.97305 1.50164 0.86760 1.83594 1.23697 1.30603 1.73632 1.19796 0.85799 0.83118 0.82839 1.90699 1.64640 1.35869 1.51168 1.20750 0.92704 0.88540 0.92040 1.22732 0.96349 0.99890 1.04319 1.23020 0.90809 0.96099 0.89858 1.68192 1.41681 0.98608 1.18598 1.20864 0.86759 0.88245 0.91362 1.58628 1.05982 1.11591 1.41777 1.22953 1.03319 0.93984 0.89759 1.22740 0.80297 0.94852 1.03380 1.87988 1.24090 1.69800 1.48518 1.22776 0.99101 0.89541 0.90201 1.22719 0.84425 0.98114 1.04017 1.68124 1.05532 1.32217 1.15379 0.90450 0.82231 0.80779 0.92797 0.87183 0.91588 0.87538 0.92049 0.87815 0.88417 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.31 13.95 55.49 0.77 -23.53 16 2 C 0.07 1.95 5.50 -17.51 -0.10 1.85 16 3 Si 0.90 21.17 28.62 -169.99 -4.86 16.30 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.25 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.37 -10.82 10.11 30.98 0.31 -10.50 16 8 H 0.11 3.62 7.09 -52.49 -0.37 3.25 16 9 O -0.21 -5.70 8.42 -21.21 -0.18 -5.88 16 10 C 0.44 10.79 7.90 34.85 0.28 11.06 16 11 O -0.53 -13.87 15.66 -19.22 -0.30 -14.17 16 12 C 0.21 4.17 6.79 -82.67 -0.56 3.61 16 13 C -0.21 -3.28 9.71 -38.88 -0.38 -3.66 16 14 C 0.17 2.18 11.30 -17.23 -0.19 1.98 16 15 N -0.55 -8.10 8.67 -13.95 -0.12 -8.22 16 16 C 0.48 8.14 7.17 -322.95 -2.32 5.82 16 17 N -0.46 -6.70 4.79 -175.11 -0.84 -7.54 16 18 C 0.03 0.35 5.49 -3.70 -0.02 0.33 16 19 C 0.06 0.70 7.01 37.21 0.26 0.96 16 20 O -0.39 -4.42 10.83 -35.23 -0.38 -4.80 16 21 C 0.06 0.59 7.01 37.21 0.26 0.85 16 22 C 0.03 0.40 4.80 -3.71 -0.02 0.38 16 23 N -0.49 -9.75 9.55 -10.51 -0.10 -9.85 16 24 H 0.29 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.16 2.28 7.73 -52.48 -0.41 1.87 16 26 H 0.18 1.43 8.06 -52.48 -0.42 1.00 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.11 1.66 7.67 -51.93 -0.40 1.26 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.07 7.83 -51.93 -0.41 0.67 16 34 H 0.06 0.73 8.01 -51.93 -0.42 0.32 16 LS Contribution 300.00 15.07 4.52 4.52 Total: -1.00 -32.98 300.00 -7.63 -40.61 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.67 Total: -0.13 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -2.47 Total: 12.69 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.29 Total: -49.14 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.86 Total: -24.86 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.86 Total: 16.30 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.98 -7.63 -40.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328891635.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.669 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds