Wall clock time and date at job start Tue Mar 31 2020 00:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46958 * 2 1 4 4 C 1.36923 * 120.00204 * 93.51121 * 3 2 1 5 5 H 1.08004 * 119.99294 * 229.79697 * 4 3 2 6 6 C 1.38798 * 120.00408 * 49.51842 * 4 3 2 7 7 N 1.31563 * 120.00123 * 196.57897 * 6 4 3 8 8 Si 1.86797 * 119.99833 * 16.57429 * 6 4 3 9 9 H 1.48496 * 109.47174 * 93.94471 * 8 6 4 10 10 H 1.48499 * 109.47266 * 213.94956 * 8 6 4 11 11 H 1.48504 * 109.47019 * 333.94801 * 8 6 4 12 12 C 1.38231 * 119.99578 * 273.50788 * 3 2 1 13 13 N 1.31569 * 126.45715 * 5.88588 * 12 3 2 14 14 N 1.28421 * 110.49324 * 179.85455 * 13 12 3 15 15 N 1.28907 * 110.35508 * 0.42048 * 14 13 12 16 16 N 1.35433 * 126.45504 * 186.19671 * 12 3 2 17 17 C 1.46498 * 127.38894 * 0.02562 * 16 12 3 18 18 C 1.50705 * 109.47159 * 94.26802 * 17 16 12 19 19 C 1.33384 * 125.20670 * 89.71732 * 18 17 16 20 20 C 1.38423 * 114.92344 * 179.86033 * 19 18 17 21 21 C 1.33383 * 114.91792 * 0.43314 * 20 19 18 22 22 S 1.75885 * 109.59822 * 359.76907 * 21 20 19 23 23 H 1.08995 * 109.47587 * 304.99916 * 1 2 3 24 24 H 1.09002 * 109.46955 * 64.99768 * 1 2 3 25 25 H 1.09007 * 109.47068 * 184.99562 * 1 2 3 26 26 H 1.08996 * 109.47278 * 239.99830 * 2 1 3 27 27 H 1.08995 * 109.46716 * 119.99692 * 2 1 3 28 28 H 0.96997 * 119.99758 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47641 * 214.26674 * 17 16 12 30 30 H 1.09000 * 109.47537 * 334.26898 * 17 16 12 31 31 H 1.08007 * 122.53776 * 0.02562 * 19 18 17 32 32 H 1.07996 * 122.53735 * 180.19986 * 20 19 18 33 33 H 1.08004 * 125.20405 * 179.79270 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3150 2.0026 1.1835 5 1 1.9165 2.9844 1.3926 6 6 3.1230 1.3683 2.1169 7 7 3.1493 1.7938 3.3616 8 14 4.1731 -0.0897 1.6060 9 1 5.5330 0.3831 1.2421 10 1 4.2685 -1.0507 2.7341 11 1 3.5526 -0.7605 0.4353 12 6 2.1796 2.0572 -1.1949 13 7 1.8345 1.6268 -2.3894 14 7 2.1214 2.5031 -3.2832 15 7 2.6690 3.5357 -2.7394 16 7 2.7280 3.2849 -1.3574 17 6 3.2680 4.1628 -0.3163 18 6 4.7542 3.9440 -0.1958 19 6 5.6869 4.6048 -0.8832 20 6 6.9907 4.2341 -0.6024 21 6 7.1163 3.2660 0.3066 22 16 5.5238 2.7730 0.8672 23 1 -0.3634 0.5894 0.8418 24 1 -0.3633 0.4344 -0.9314 25 1 -0.3633 -1.0238 0.0895 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.7142 1.3507 4.0138 29 1 3.0741 5.2022 -0.5809 30 1 2.7889 3.9348 0.6359 31 1 5.4435 5.3728 -1.6025 32 1 7.8415 4.6913 -1.0854 33 1 8.0527 2.8489 0.6466 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335352825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:27 Heat of formation + Delta-G solvation = 167.242815 kcal Electronic energy + Delta-G solvation = -20301.845374 eV Core-core repulsion = 17299.839931 eV Total energy + Delta-G solvation = -3002.005443 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.41051 -38.97719 -38.68579 -35.77786 -34.46233 -32.49316 -31.59990 -30.87581 -27.96465 -26.35595 -24.70816 -24.39296 -23.23532 -22.10280 -20.11394 -19.61074 -18.66415 -17.66835 -17.47839 -17.16955 -16.79364 -16.22704 -15.31142 -15.19003 -14.65608 -14.49468 -14.25615 -14.13563 -13.90819 -13.73992 -13.44344 -13.28512 -13.05529 -12.81462 -12.70866 -12.25038 -12.00513 -11.81509 -11.50297 -11.37837 -11.12737 -10.97980 -10.86398 -9.68205 -9.24832 -9.06297 -8.54599 -6.32432 -0.03659 0.50954 0.75300 1.10855 1.20308 1.36675 1.43410 1.49093 1.78548 1.90065 2.17955 2.58080 2.82961 3.68555 3.80420 4.07278 4.14827 4.20646 4.42534 4.45505 4.57246 4.64805 4.68203 4.77999 4.93740 4.95552 5.04561 5.22508 5.35733 5.37243 5.44707 5.55865 5.62590 5.96726 6.41418 6.98890 7.24159 7.98744 8.52753 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.014991 B = 0.011789 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.321214 B = 2374.495419 C = 3632.739155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.123 3.877 3 N -0.435 5.435 4 C -0.343 4.343 5 H 0.083 0.917 6 C 0.078 3.922 7 N -0.867 5.867 8 Si 0.858 3.142 9 H -0.235 1.235 10 H -0.275 1.275 11 H -0.238 1.238 12 C 0.476 3.524 13 N -0.424 5.424 14 N -0.051 5.051 15 N -0.136 5.136 16 N -0.411 5.411 17 C 0.191 3.809 18 C -0.217 4.217 19 C -0.121 4.121 20 C -0.141 4.141 21 C -0.239 4.239 22 S 0.118 5.882 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.284 0.716 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 0.897 -1.018 5.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.001 3.999 3 N -0.146 5.146 4 C -0.472 4.472 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.500 5.500 8 Si 0.683 3.317 9 H -0.161 1.161 10 H -0.200 1.200 11 H -0.162 1.162 12 C 0.115 3.885 13 N -0.294 5.294 14 N -0.047 5.047 15 N -0.126 5.126 16 N -0.215 5.215 17 C 0.068 3.932 18 C -0.335 4.335 19 C -0.153 4.153 20 C -0.172 4.172 21 C -0.375 4.375 22 S 0.383 5.617 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.136 0.864 30 H 0.149 0.851 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.638 -0.153 -0.937 4.734 hybrid contribution 1.151 0.608 0.168 1.313 sum 5.789 0.456 -0.769 5.858 Atomic orbital electron populations 1.22026 0.94595 1.02889 1.01517 1.21931 0.95662 0.80877 1.01448 1.41731 1.61872 1.12379 0.98610 1.18605 1.32271 1.05238 0.91060 0.90008 1.25558 0.94815 0.98702 0.94201 1.69760 1.36606 1.41506 1.02100 0.87193 0.82584 0.81746 0.80190 1.16081 1.20046 1.16159 1.22336 0.91080 0.84912 0.90133 1.74591 1.34228 1.25160 0.95387 1.77508 1.07239 0.96380 1.23573 1.82115 1.25052 1.19781 0.85655 1.50936 1.48625 1.15208 1.06740 1.20707 0.88237 0.93819 0.90428 1.24798 0.99090 1.03894 1.05731 1.20450 0.92180 1.02009 1.00682 1.20363 0.97854 0.99094 0.99851 1.26311 1.02404 1.04014 1.04804 1.85912 0.97716 1.35802 1.42254 0.92924 0.93365 0.89409 0.91450 0.90736 0.90551 0.86449 0.85089 0.83022 0.81733 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 10.23 71.98 0.74 -4.32 16 2 C 0.12 4.74 4.18 86.38 0.36 5.10 16 3 N -0.44 -18.82 2.03 -522.78 -1.06 -19.88 16 4 C -0.34 -15.50 7.07 84.03 0.59 -14.91 16 5 H 0.08 4.01 6.03 -2.91 -0.02 3.99 16 6 C 0.08 3.50 3.85 84.87 0.33 3.83 16 7 N -0.87 -41.12 13.96 21.64 0.30 -40.82 16 8 Si 0.86 34.67 24.03 68.60 1.65 36.32 16 9 H -0.23 -9.22 5.50 99.48 0.55 -8.67 16 10 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.24 -9.42 4.96 99.48 0.49 -8.93 16 12 C 0.48 21.31 8.36 260.63 2.18 23.48 16 13 N -0.42 -19.51 11.68 -58.66 -0.69 -20.20 16 14 N -0.05 -2.32 13.38 37.02 0.50 -1.83 16 15 N -0.14 -5.94 13.93 37.02 0.52 -5.42 16 16 N -0.41 -17.41 3.68 -353.32 -1.30 -18.70 16 17 C 0.19 7.09 6.36 85.64 0.54 7.63 16 18 C -0.22 -7.82 6.09 24.59 0.15 -7.67 16 19 C -0.12 -3.76 10.05 21.22 0.21 -3.54 16 20 C -0.14 -3.92 10.18 21.21 0.22 -3.71 16 21 C -0.24 -7.16 11.23 66.72 0.75 -6.41 16 22 S 0.12 4.43 16.76 -56.49 -0.95 3.49 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.07 2.58 7.72 -2.39 -0.02 2.56 16 27 H 0.07 2.83 4.68 -2.39 -0.01 2.82 16 28 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 29 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.13 5.31 4.18 -2.39 -0.01 5.30 16 31 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 32 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.18 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -53.35 282.29 5.81 -47.54 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.77 Total: 20.01 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 6.07 Total: -0.51 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -1.73 Total: -106.85 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 1.65 Total: 36.32 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -0.95 Total: 3.49 kcal Total: -53.35 5.81 -47.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335352825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.785 kcal (2) G-P(sol) polarization free energy of solvation -53.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds