Wall clock time and date at job start Tue Mar 31 2020 00:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.70770 * 2 1 4 4 C 1.52764 * 109.50833 * 239.88135 * 2 1 3 5 5 C 1.53042 * 109.38621 * 185.70704 * 4 2 1 6 6 C 1.53043 * 109.53516 * 61.23875 * 5 4 2 7 7 F 1.39899 * 109.49457 * 178.68583 * 6 5 4 8 8 F 1.39895 * 109.49544 * 58.59315 * 6 5 4 9 9 C 1.53191 * 109.31603 * 298.63656 * 6 5 4 10 10 N 1.46923 * 108.77393 * 54.63463 * 9 6 5 11 11 C 1.34779 * 120.63163 * 126.36917 * 10 9 6 12 12 O 1.21278 * 120.00062 * 174.20050 * 11 10 9 13 13 C 1.50702 * 119.99823 * 354.20173 * 11 10 9 14 14 S 1.80998 * 109.47147 * 179.97438 * 13 11 10 15 15 C 1.76195 * 100.00108 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99884 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00127 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00081 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99777 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47422 * 60.00500 * 19 17 15 21 21 H 1.48502 * 109.46780 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47118 * 299.99972 * 19 17 15 23 23 H 1.09000 * 109.46811 * 305.44813 * 1 2 3 24 24 H 1.09000 * 109.47336 * 65.44528 * 1 2 3 25 25 H 1.09002 * 109.47463 * 185.44607 * 1 2 3 26 26 H 1.09003 * 109.56449 * 65.67331 * 4 2 1 27 27 H 1.08998 * 109.38956 * 305.63588 * 4 2 1 28 28 H 1.09000 * 109.45922 * 301.22222 * 5 4 2 29 29 H 1.08997 * 109.46464 * 181.26578 * 5 4 2 30 30 H 1.08996 * 109.58690 * 294.84883 * 9 6 5 31 31 H 1.09001 * 109.58541 * 174.42312 * 9 6 5 32 32 H 1.08994 * 109.47422 * 59.99638 * 13 11 10 33 33 H 1.09003 * 109.46823 * 300.00204 * 13 11 10 34 34 H 0.96996 * 120.00507 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7226 -1.2455 5 6 3.5638 -0.8463 -1.1727 6 6 3.9522 -1.6688 0.0581 7 9 5.3435 -1.8067 0.1073 8 9 3.3595 -2.9336 -0.0196 9 6 3.4644 -0.9520 1.3210 10 7 2.0226 -0.6996 1.1944 11 6 1.1673 -1.1070 2.1531 12 8 -0.0047 -0.8018 2.0898 13 6 1.6674 -1.9418 3.3039 14 16 0.2905 -2.3252 4.4143 15 6 1.1351 -3.2802 5.6305 16 1 2.1956 -3.4607 5.5347 17 6 0.4377 -3.7996 6.7124 18 7 -0.8547 -3.5792 6.8295 19 14 1.3333 -4.8114 8.0022 20 1 2.3998 -3.9871 8.6253 21 1 0.3707 -5.2472 9.0456 22 1 1.9412 -6.0048 7.3608 23 1 -0.3633 0.5960 0.8372 24 1 -0.3634 0.4271 -0.9347 25 1 -0.3634 -1.0230 0.0975 26 1 1.7632 -0.1566 -2.1350 27 1 1.5963 -1.7169 -1.2943 28 1 4.0057 0.1474 -1.0997 29 1 3.9313 -1.3417 -2.0714 30 1 3.9928 -0.0051 1.4310 31 1 3.6504 -1.5800 2.1924 32 1 2.4307 -1.3876 3.8500 33 1 2.0953 -2.8685 2.9214 34 1 -1.3421 -3.9424 7.5853 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336264297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:16 Heat of formation + Delta-G solvation = -127.618461 kcal Electronic energy + Delta-G solvation = -20373.029307 eV Core-core repulsion = 16875.255782 eV Total energy + Delta-G solvation = -3497.773525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.11865 -47.11646 -40.22249 -36.96460 -33.49921 -32.44369 -32.08765 -29.13466 -27.27061 -25.48659 -24.97279 -22.46349 -21.41372 -19.25224 -17.89019 -17.48082 -17.09085 -16.74134 -16.00506 -15.80313 -15.29657 -14.81004 -14.20526 -14.11306 -13.99136 -13.75224 -13.48016 -13.22501 -13.14843 -12.75174 -12.62212 -12.42143 -12.24992 -12.04785 -11.54381 -11.32628 -11.25630 -11.04559 -11.03725 -10.87261 -10.77219 -9.83022 -9.06707 -8.84818 -8.67715 -8.26617 -6.51948 -6.22575 -3.93503 2.67250 2.89816 3.22517 3.23805 3.28595 3.45760 3.54192 3.76770 4.11920 4.15504 4.20159 4.52796 4.79116 4.87242 4.95858 5.06136 5.12790 5.21573 5.28895 5.35956 5.42881 5.48611 5.61191 5.77012 5.81673 5.84413 6.07572 6.21285 6.34253 6.71368 7.34897 7.58662 8.34119 8.44325 9.22852 10.84828 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.004996 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.662352 B = 5602.993536 C = 6490.635023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.141 3.859 3 H 0.074 0.926 4 C -0.133 4.133 5 C -0.158 4.158 6 C 0.273 3.727 7 F -0.197 7.197 8 F -0.191 7.191 9 C 0.075 3.925 10 N -0.616 5.616 11 C 0.541 3.459 12 O -0.498 6.498 13 C -0.158 4.158 14 S -0.057 6.057 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.084 0.916 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.959 7.465 -16.151 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.039 3.961 3 H 0.092 0.908 4 C -0.171 4.171 5 C -0.196 4.196 6 C 0.236 3.764 7 F -0.178 7.178 8 F -0.172 7.172 9 C -0.051 4.051 10 N -0.353 5.353 11 C 0.330 3.670 12 O -0.371 6.371 13 C -0.308 4.308 14 S 0.170 5.830 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.103 0.897 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.029 7.858 -16.120 19.648 hybrid contribution 2.299 -1.265 0.845 2.756 sum 10.328 6.593 -15.275 19.582 Atomic orbital electron populations 1.22218 0.91743 1.04467 1.01273 1.21254 0.96772 0.94874 0.83234 0.90848 1.21985 0.93220 1.03100 0.98842 1.22525 0.98808 1.01442 0.96790 1.21475 0.74288 0.81525 0.99120 1.93018 1.30948 1.96320 1.97545 1.93046 1.83527 1.43198 1.97406 1.22550 0.83183 1.02143 0.97188 1.48041 1.05621 1.59900 1.21716 1.20291 0.85672 0.78829 0.82212 1.90746 1.16579 1.54458 1.75338 1.23657 1.06861 1.01402 0.98913 1.85335 1.07762 1.67820 1.22080 1.22821 0.97211 1.38276 1.10173 0.90977 1.24977 0.94955 0.96026 0.97490 1.69997 1.06996 1.43091 1.30228 0.86228 0.79163 0.80024 0.80131 1.19916 1.20783 1.19907 0.89676 0.93777 0.91227 0.89233 0.90183 0.88603 0.89198 0.88263 0.86880 0.89293 0.89088 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.60 37.15 0.28 -1.55 16 2 C 0.14 1.58 3.48 -67.82 -0.24 1.34 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -1.19 5.23 -26.83 -0.14 -1.33 16 5 C -0.16 -1.29 5.43 -26.69 -0.14 -1.43 16 6 C 0.27 3.01 2.14 -26.61 -0.06 2.95 16 7 F -0.20 -2.26 17.07 2.25 0.04 -2.22 16 8 F -0.19 -2.67 16.45 2.25 0.04 -2.64 16 9 C 0.07 0.84 5.83 -3.71 -0.02 0.81 16 10 N -0.62 -8.41 2.96 -165.48 -0.49 -8.90 16 11 C 0.54 9.91 7.51 -10.98 -0.08 9.82 16 12 O -0.50 -10.47 11.44 5.56 0.06 -10.41 16 13 C -0.16 -3.19 4.51 36.01 0.16 -3.03 16 14 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 15 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 16 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 17 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 18 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 19 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 H 0.08 1.31 6.53 -51.93 -0.34 0.97 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 1.09 6.97 -51.93 -0.36 0.73 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.86 7.74 -51.93 -0.40 0.46 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.11 1.34 5.93 -51.93 -0.31 1.03 16 32 H 0.09 1.64 7.70 -51.92 -0.40 1.24 16 33 H 0.09 1.78 7.93 -51.92 -0.41 1.37 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 297.08 15.07 4.48 4.48 Total: -1.00 -32.91 297.08 -6.72 -39.63 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.30 Total: -1.92 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.04 Total: -5.33 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.24 Total: -34.25 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.06 Total: -10.41 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.08 Total: -4.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.91 -6.72 -39.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336264297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.987 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds