Wall clock time and date at job start Tue Mar 31 2020 00:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.70770 * 2 1 4 4 C 1.52764 * 109.50833 * 239.88135 * 2 1 3 5 5 C 1.53042 * 109.38621 * 185.70704 * 4 2 1 6 6 C 1.53043 * 109.53516 * 61.23875 * 5 4 2 7 7 F 1.39899 * 109.49457 * 178.68583 * 6 5 4 8 8 F 1.39895 * 109.49544 * 58.59315 * 6 5 4 9 9 C 1.53191 * 109.31603 * 298.63656 * 6 5 4 10 10 N 1.46923 * 108.77393 * 54.63463 * 9 6 5 11 11 C 1.34779 * 120.63163 * 126.36917 * 10 9 6 12 12 O 1.21278 * 120.00062 * 174.20050 * 11 10 9 13 13 C 1.50702 * 119.99823 * 354.20173 * 11 10 9 14 14 S 1.80998 * 109.47147 * 179.97438 * 13 11 10 15 15 C 1.76195 * 100.00108 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99884 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00127 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00081 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99777 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47422 * 60.00500 * 19 17 15 21 21 H 1.48502 * 109.46780 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47118 * 299.99972 * 19 17 15 23 23 H 1.09000 * 109.46811 * 305.44813 * 1 2 3 24 24 H 1.09000 * 109.47336 * 65.44528 * 1 2 3 25 25 H 1.09002 * 109.47463 * 185.44607 * 1 2 3 26 26 H 1.09003 * 109.56449 * 65.67331 * 4 2 1 27 27 H 1.08998 * 109.38956 * 305.63588 * 4 2 1 28 28 H 1.09000 * 109.45922 * 301.22222 * 5 4 2 29 29 H 1.08997 * 109.46464 * 181.26578 * 5 4 2 30 30 H 1.08996 * 109.58690 * 294.84883 * 9 6 5 31 31 H 1.09001 * 109.58541 * 174.42312 * 9 6 5 32 32 H 1.08994 * 109.47422 * 59.99638 * 13 11 10 33 33 H 1.09003 * 109.46823 * 300.00204 * 13 11 10 34 34 H 0.96996 * 120.00507 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7226 -1.2455 5 6 3.5638 -0.8463 -1.1727 6 6 3.9522 -1.6688 0.0581 7 9 5.3435 -1.8067 0.1073 8 9 3.3595 -2.9336 -0.0196 9 6 3.4644 -0.9520 1.3210 10 7 2.0226 -0.6996 1.1944 11 6 1.1673 -1.1070 2.1531 12 8 -0.0047 -0.8018 2.0898 13 6 1.6674 -1.9418 3.3039 14 16 0.2905 -2.3252 4.4143 15 6 1.1351 -3.2802 5.6305 16 1 2.1956 -3.4607 5.5347 17 6 0.4377 -3.7996 6.7124 18 7 -0.8547 -3.5792 6.8295 19 14 1.3333 -4.8114 8.0022 20 1 2.3998 -3.9871 8.6253 21 1 0.3707 -5.2472 9.0456 22 1 1.9412 -6.0048 7.3608 23 1 -0.3633 0.5960 0.8372 24 1 -0.3634 0.4271 -0.9347 25 1 -0.3634 -1.0230 0.0975 26 1 1.7632 -0.1566 -2.1350 27 1 1.5963 -1.7169 -1.2943 28 1 4.0057 0.1474 -1.0997 29 1 3.9313 -1.3417 -2.0714 30 1 3.9928 -0.0051 1.4310 31 1 3.6504 -1.5800 2.1924 32 1 2.4307 -1.3876 3.8500 33 1 2.0953 -2.8685 2.9214 34 1 -1.3421 -3.9424 7.5853 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336264297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:15 Heat of formation + Delta-G solvation = -148.666288 kcal Electronic energy + Delta-G solvation = -20373.942009 eV Core-core repulsion = 16875.255782 eV Total energy + Delta-G solvation = -3498.686227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.02823 -48.04802 -41.44717 -38.11778 -34.60883 -34.56590 -32.99984 -30.58948 -28.34135 -27.64484 -25.86540 -23.44881 -22.37306 -20.52270 -19.62977 -18.54013 -18.19039 -17.80122 -17.09129 -16.96394 -16.89146 -16.49773 -15.88493 -15.10941 -15.04850 -14.88829 -14.55357 -14.48291 -14.38413 -13.95840 -13.80344 -13.50741 -13.32725 -13.23837 -13.12501 -12.88826 -12.63715 -12.53544 -12.19288 -12.13016 -11.76448 -11.68923 -11.14821 -10.31487 -10.21437 -9.77590 -8.69015 -8.36546 -6.14810 1.20248 1.41123 1.42409 1.47856 1.52994 1.90014 2.25448 2.66148 2.97579 2.98744 3.12417 3.34833 3.38592 3.65290 3.83279 4.01428 4.11540 4.18609 4.26358 4.38518 4.43396 4.48633 4.58351 4.77743 4.79795 4.86182 5.02182 5.26671 5.31005 5.39228 5.63833 6.09643 6.17543 7.04676 7.07647 8.72447 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.004996 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.662352 B = 5602.993536 C = 6490.635023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.136 3.864 3 H 0.108 0.892 4 C -0.126 4.126 5 C -0.150 4.150 6 C 0.266 3.734 7 F -0.199 7.199 8 F -0.214 7.214 9 C 0.067 3.933 10 N -0.605 5.605 11 C 0.539 3.461 12 O -0.535 6.535 13 C -0.134 4.134 14 S -0.140 6.140 15 C -0.551 4.551 16 H 0.080 0.920 17 C 0.017 3.983 18 N -0.910 5.910 19 Si 0.997 3.003 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.264 1.264 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.033 0.967 26 H 0.124 0.876 27 H 0.055 0.945 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.575 8.357 -17.440 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.035 3.965 3 H 0.126 0.874 4 C -0.164 4.164 5 C -0.187 4.187 6 C 0.229 3.771 7 F -0.180 7.180 8 F -0.195 7.195 9 C -0.057 4.057 10 N -0.340 5.340 11 C 0.327 3.673 12 O -0.412 6.412 13 C -0.285 4.285 14 S 0.087 5.913 15 C -0.698 4.698 16 H 0.098 0.902 17 C -0.188 4.188 18 N -0.546 5.546 19 Si 0.818 3.182 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.189 1.189 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.052 0.948 26 H 0.142 0.858 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.156 0.844 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.688 8.763 -17.449 22.260 hybrid contribution 1.533 -1.486 1.128 2.414 sum 12.221 7.277 -16.322 21.650 Atomic orbital electron populations 1.22049 0.93589 1.01848 1.01673 1.21572 0.95382 0.96654 0.82896 0.87419 1.21949 0.93749 1.01972 0.98730 1.22575 0.97985 1.02588 0.95599 1.21809 0.74026 0.80810 1.00420 1.93015 1.31043 1.96295 1.97630 1.93008 1.83966 1.45026 1.97546 1.22833 0.81653 1.04018 0.97197 1.47970 1.06261 1.58592 1.21198 1.19961 0.85670 0.78932 0.82756 1.90759 1.18123 1.55999 1.76278 1.23483 1.04037 1.02432 0.98520 1.85446 1.12998 1.68375 1.24484 1.23163 0.97595 1.38472 1.10604 0.90221 1.26091 0.95756 0.97114 0.99882 1.70158 1.08893 1.44383 1.31183 0.85031 0.77979 0.78294 0.76876 1.18537 1.20163 1.18904 0.92554 0.90570 0.94784 0.85760 0.92630 0.85401 0.87835 0.84397 0.88010 0.87419 0.88639 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 7.60 71.98 0.55 -2.90 16 2 C 0.14 2.68 3.48 44.83 0.16 2.84 16 3 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.13 -1.82 5.23 30.53 0.16 -1.66 16 5 C -0.15 -1.80 5.43 30.62 0.17 -1.63 16 6 C 0.27 5.15 2.14 30.67 0.07 5.22 16 7 F -0.20 -4.00 17.07 44.97 0.77 -3.23 16 8 F -0.21 -5.80 16.45 44.97 0.74 -5.06 16 9 C 0.07 1.33 5.83 86.36 0.50 1.83 16 10 N -0.60 -15.60 2.96 -795.83 -2.35 -17.95 16 11 C 0.54 19.97 7.51 87.66 0.66 20.63 16 12 O -0.53 -23.50 11.44 -3.02 -0.03 -23.53 16 13 C -0.13 -5.48 4.51 71.24 0.32 -5.16 16 14 S -0.14 -7.85 20.57 -56.49 -1.16 -9.01 16 15 C -0.55 -31.87 9.50 67.95 0.65 -31.22 16 16 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 17 C 0.02 0.95 5.49 84.86 0.47 1.42 16 18 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 19 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 H 0.06 1.77 6.53 -2.39 -0.02 1.76 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.03 1.10 6.97 -2.39 -0.02 1.08 16 26 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.11 7.74 -2.39 -0.02 1.09 16 28 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.10 2.24 5.93 -2.39 -0.01 2.23 16 32 H 0.11 3.95 7.70 -2.40 -0.02 3.94 16 33 H 0.10 3.79 7.93 -2.39 -0.02 3.77 16 34 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -75.72 297.08 5.07 -70.65 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.11 Total: 8.59 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 3.69 Total: -10.65 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -2.07 Total: -73.76 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.03 Total: -23.53 kcal Atomic # 9 Polarization: -9.79 SS G_CDS: 1.51 Total: -8.29 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.01 kcal Total: -75.72 5.07 -70.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336264297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.013 kcal (2) G-P(sol) polarization free energy of solvation -75.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds