Wall clock time and date at job start Tue Mar 31 2020 00:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.69977 * 2 1 4 4 C 1.53188 * 109.59060 * 120.35461 * 2 1 3 5 5 C 1.53041 * 109.31466 * 174.42221 * 4 2 1 6 6 C 1.53042 * 109.53727 * 298.63828 * 5 4 2 7 7 F 1.39902 * 109.49727 * 301.41071 * 6 5 4 8 8 F 1.39901 * 109.49416 * 181.31515 * 6 5 4 9 9 C 1.53186 * 109.31234 * 61.36413 * 6 5 4 10 10 N 1.46922 * 109.58729 * 239.64837 * 2 1 3 11 11 C 1.34777 * 120.63098 * 6.58339 * 10 2 1 12 12 O 1.21286 * 120.00117 * 5.70351 * 11 10 2 13 13 C 1.50702 * 120.00292 * 185.71470 * 11 10 2 14 14 S 1.80994 * 109.47390 * 179.97438 * 13 11 10 15 15 C 1.76199 * 100.00131 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99813 * 359.97438 * 15 14 13 17 17 C 1.38802 * 120.00101 * 180.02562 * 15 14 13 18 18 N 1.31635 * 119.99679 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46916 * 59.99872 * 19 17 15 21 21 H 1.48502 * 109.47057 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46978 * 300.00010 * 19 17 15 23 23 H 1.08999 * 109.46822 * 294.11193 * 1 2 3 24 24 H 1.08999 * 109.47405 * 54.11474 * 1 2 3 25 25 H 1.08994 * 109.46572 * 174.11724 * 1 2 3 26 26 H 1.09003 * 109.49904 * 294.37588 * 4 2 1 27 27 H 1.09006 * 109.49495 * 54.47305 * 4 2 1 28 28 H 1.09000 * 109.45700 * 58.65624 * 5 4 2 29 29 H 1.08998 * 109.45950 * 178.61860 * 5 4 2 30 30 H 1.09005 * 109.58935 * 185.57272 * 9 6 5 31 31 H 1.08997 * 109.70751 * 65.22412 * 9 6 5 32 32 H 1.09007 * 109.46711 * 299.99420 * 13 11 10 33 33 H 1.09002 * 109.46928 * 59.99001 * 13 11 10 34 34 H 0.97006 * 119.99677 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5676 -0.8479 1.1700 6 6 3.9570 -1.6656 -0.0636 7 9 3.3684 -2.9326 0.0111 8 9 5.3487 -1.7988 -0.1152 9 6 3.4650 -0.9468 -1.3238 10 7 2.0226 -0.6994 -1.1945 11 6 1.1674 -1.1068 -2.1532 12 8 -0.0060 -0.8074 -2.0863 13 6 1.6690 -1.9345 -3.3084 14 16 0.2915 -2.3209 -4.4169 15 6 1.1384 -3.2655 -5.6397 16 1 2.2001 -3.4403 -5.5474 17 6 0.4412 -3.7841 -6.7221 18 7 -0.8527 -3.5697 -6.8353 19 14 1.3389 -4.7861 -8.0180 20 1 1.9542 -5.9790 -7.3828 21 1 0.3763 -5.2215 -9.0617 22 1 2.3998 -3.9539 -8.6400 23 1 -0.3633 0.4198 0.9380 24 1 -0.3634 0.6024 -0.8326 25 1 -0.3632 -1.0222 -0.1053 26 1 1.7661 -0.1668 2.1368 27 1 1.6031 -1.7253 1.2912 28 1 4.0061 0.1475 1.0992 29 1 3.9379 -1.3448 2.0667 30 1 3.6518 -1.5715 -2.1973 31 1 3.9900 0.0020 -1.4343 32 1 2.4286 -1.3744 -3.8538 33 1 2.1019 -2.8608 -2.9306 34 1 -1.3400 -3.9324 -7.5916 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336264302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:17 Heat of formation + Delta-G solvation = -148.684358 kcal Electronic energy + Delta-G solvation = -20372.297562 eV Core-core repulsion = 16873.610551 eV Total energy + Delta-G solvation = -3498.687011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.02651 -48.04687 -41.44084 -38.10378 -34.60670 -34.55064 -33.00024 -30.58494 -28.34338 -27.64437 -25.85731 -23.44922 -22.37029 -20.52493 -19.62902 -18.53703 -18.19097 -17.79745 -17.08853 -16.96410 -16.89107 -16.49632 -15.88420 -15.10400 -15.04517 -14.88652 -14.55372 -14.48151 -14.38368 -13.95789 -13.79971 -13.50509 -13.32846 -13.23756 -13.12516 -12.88808 -12.63701 -12.53464 -12.18962 -12.13293 -11.76410 -11.69261 -11.14772 -10.31486 -10.21430 -9.77301 -8.69003 -8.36592 -6.14830 1.20297 1.41187 1.42417 1.47885 1.52987 1.90023 2.25454 2.66243 2.97534 2.98760 3.12445 3.34860 3.38741 3.65186 3.82782 4.01405 4.11341 4.18562 4.26262 4.38524 4.43431 4.48660 4.58483 4.77802 4.79832 4.86176 5.02346 5.26557 5.31044 5.39229 5.63814 6.09614 6.17538 7.04641 7.07656 8.72375 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.004995 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.981636 B = 5603.783514 C = 6491.765171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.136 3.864 3 H 0.108 0.892 4 C -0.126 4.126 5 C -0.150 4.150 6 C 0.267 3.733 7 F -0.214 7.214 8 F -0.199 7.199 9 C 0.067 3.933 10 N -0.605 5.605 11 C 0.539 3.461 12 O -0.535 6.535 13 C -0.134 4.134 14 S -0.140 6.140 15 C -0.551 4.551 16 H 0.080 0.920 17 C 0.016 3.984 18 N -0.910 5.910 19 Si 0.997 3.003 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.261 1.261 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.124 0.876 27 H 0.055 0.945 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.579 8.351 17.445 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.035 3.965 3 H 0.126 0.874 4 C -0.164 4.164 5 C -0.187 4.187 6 C 0.230 3.770 7 F -0.195 7.195 8 F -0.180 7.180 9 C -0.057 4.057 10 N -0.340 5.340 11 C 0.327 3.673 12 O -0.412 6.412 13 C -0.285 4.285 14 S 0.087 5.913 15 C -0.698 4.698 16 H 0.098 0.902 17 C -0.189 4.189 18 N -0.546 5.546 19 Si 0.818 3.182 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.185 1.185 23 H 0.094 0.906 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.142 0.858 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.156 0.844 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.689 8.746 17.461 22.263 hybrid contribution 1.536 -1.468 -1.142 2.412 sum 12.226 7.278 16.319 21.651 Atomic orbital electron populations 1.22040 0.93585 1.01876 1.01601 1.21670 0.95373 0.96620 0.82851 0.87391 1.22020 0.93718 1.01900 0.98733 1.22575 0.97981 1.02651 0.95540 1.21801 0.74057 0.80760 1.00417 1.93010 1.84136 1.44836 1.97561 1.93016 1.31017 1.96327 1.97624 1.22827 0.81609 1.04050 0.97229 1.47968 1.06223 1.58653 1.21180 1.19964 0.85704 0.78879 0.82793 1.90763 1.18032 1.56015 1.76365 1.23484 1.04024 1.02482 0.98479 1.85447 1.12803 1.68866 1.24193 1.23164 0.97448 1.38850 1.10365 0.90220 1.26097 0.95772 0.97052 0.99937 1.70168 1.08836 1.44404 1.31209 0.85029 0.77970 0.78314 0.76855 1.18893 1.20161 1.18549 0.90588 0.92629 0.94733 0.85800 0.92612 0.85402 0.87839 0.88027 0.84396 0.87418 0.88643 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 7.61 71.98 0.55 -2.89 16 2 C 0.14 2.68 3.49 44.97 0.16 2.84 16 3 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 4 C -0.13 -1.81 5.25 30.67 0.16 -1.65 16 5 C -0.15 -1.80 5.42 30.62 0.17 -1.63 16 6 C 0.27 5.16 2.14 30.67 0.07 5.22 16 7 F -0.21 -5.79 16.45 44.97 0.74 -5.05 16 8 F -0.20 -4.00 17.07 44.97 0.77 -3.23 16 9 C 0.07 1.32 5.83 86.36 0.50 1.83 16 10 N -0.60 -15.60 2.95 -795.04 -2.35 -17.94 16 11 C 0.54 19.96 7.52 87.66 0.66 20.62 16 12 O -0.54 -23.51 11.43 -3.05 -0.03 -23.54 16 13 C -0.13 -5.48 4.51 71.24 0.32 -5.16 16 14 S -0.14 -7.85 20.57 -56.49 -1.16 -9.01 16 15 C -0.55 -31.87 9.50 67.95 0.65 -31.22 16 16 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 17 C 0.02 0.94 5.49 84.86 0.47 1.41 16 18 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 19 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.74 6.58 -2.39 -0.02 1.73 16 25 H 0.03 1.12 6.92 -2.39 -0.02 1.10 16 26 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.11 7.74 -2.38 -0.02 1.09 16 28 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 2.24 5.93 -2.38 -0.01 2.23 16 31 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 3.95 7.71 -2.39 -0.02 3.94 16 33 H 0.10 3.79 7.92 -2.39 -0.02 3.77 16 34 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -75.74 297.11 5.08 -70.66 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.11 Total: 8.58 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 3.69 Total: -10.64 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -2.06 Total: -73.76 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.03 Total: -23.54 kcal Atomic # 9 Polarization: -9.79 SS G_CDS: 1.51 Total: -8.28 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.01 kcal Total: -75.74 5.08 -70.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336264302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.026 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds