Wall clock time and date at job start Tue Mar 31 2020 01:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38355 * 119.40481 * 2 1 4 4 C 1.38337 * 119.45688 * 180.02562 * 3 2 1 5 5 C 1.39979 * 118.34893 * 359.97438 * 4 3 2 6 6 C 1.47526 * 120.59625 * 180.02562 * 5 4 3 7 7 O 1.21597 * 119.99920 * 179.72843 * 6 5 4 8 8 N 1.34777 * 120.00028 * 359.97438 * 6 5 4 9 9 C 1.46506 * 119.99880 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46931 * 180.02562 * 9 8 6 11 11 O 1.21296 * 119.99979 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00033 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99940 * 179.97438 * 12 10 9 14 14 H 1.07997 * 120.00464 * 0.02562 * 13 12 10 15 15 C 1.38948 * 119.99682 * 179.97438 * 13 12 10 16 16 N 1.31416 * 120.00214 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47266 * 59.99963 * 17 15 13 19 19 H 1.48506 * 109.47324 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46921 * 299.99770 * 17 15 13 21 21 C 1.40282 * 118.80706 * 0.28117 * 5 4 3 22 22 O 1.35425 * 119.79892 * 179.72767 * 21 5 4 23 23 N 1.31875 * 119.40736 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46853 * 90.00444 * 1 2 3 25 25 H 1.09001 * 109.46982 * 210.00102 * 1 2 3 26 26 H 1.09003 * 109.47098 * 330.00386 * 1 2 3 27 27 H 1.08005 * 120.27514 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.82630 * 179.97438 * 4 3 2 29 29 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 30 30 H 1.08996 * 109.47564 * 300.00632 * 9 8 6 31 31 H 1.09000 * 109.46872 * 60.00429 * 9 8 6 32 32 H 0.96996 * 119.99850 * 359.97438 * 12 10 9 33 33 H 0.97002 * 120.00022 * 179.97438 * 16 15 13 34 34 H 0.96699 * 114.00460 * 89.99929 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0247 -0.0005 6 6 5.7097 -0.0813 -0.0005 7 8 6.2769 -1.1568 0.0045 8 7 6.4278 1.0593 -0.0010 9 6 7.8918 1.0031 -0.0005 10 6 8.4482 2.4036 -0.0006 11 8 7.6958 3.3551 -0.0016 12 7 9.7817 2.5990 -0.0007 13 6 10.2879 3.8731 -0.0013 14 1 9.6181 4.7203 -0.0014 15 6 11.6627 4.0745 -0.0009 16 7 12.4778 3.0436 0.0007 17 14 12.3524 5.8105 -0.0010 18 1 11.8841 6.5293 1.2111 19 1 13.8363 5.7536 -0.0011 20 1 11.8850 6.5286 -1.2139 21 6 3.4758 -1.2040 -0.0060 22 8 4.0992 -2.4062 -0.0117 23 7 2.1546 -1.1488 -0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6411 2.1376 -0.0004 28 1 4.1223 2.1345 -0.0010 29 1 5.9754 1.9173 -0.0011 30 1 8.2349 0.4763 0.8899 31 1 8.2355 0.4752 -0.8900 32 1 10.3833 1.8381 -0.0003 33 1 13.4375 3.1842 0.0007 34 1 4.2804 -2.7596 0.8700 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341882037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:49 Heat of formation + Delta-G solvation = -106.898223 kcal Electronic energy + Delta-G solvation = -20570.814516 eV Core-core repulsion = 17081.875803 eV Total energy + Delta-G solvation = -3488.938713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97407 -40.64909 -39.68862 -38.25898 -36.26802 -35.42228 -34.11204 -33.36665 -32.62112 -29.89110 -28.44474 -26.44572 -24.35847 -24.02458 -21.77714 -21.42310 -20.16571 -19.72720 -19.08816 -18.04784 -17.45246 -16.99609 -16.60474 -16.57371 -16.43386 -15.89392 -15.55928 -15.33124 -15.20678 -14.83842 -14.31792 -13.87672 -13.66779 -13.57618 -13.53872 -13.10929 -13.00843 -12.89521 -12.62839 -12.47552 -12.14034 -11.56755 -11.34287 -11.04681 -10.60933 -10.50786 -10.31195 -10.10579 -9.84941 -8.51655 -6.02139 -0.53067 0.03851 1.37752 1.42879 1.53680 1.70420 1.87433 1.89681 2.29789 2.43808 2.69088 3.08413 3.15622 3.43485 3.65322 3.67033 3.90489 4.16809 4.26965 4.39895 4.41285 4.43463 4.67191 4.81796 4.89917 5.03316 5.12772 5.17440 5.37552 5.49384 5.90371 6.36635 6.47093 6.53011 6.79300 7.01708 7.04215 7.42696 7.92244 8.64975 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037466 B = 0.003158 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.160865 B = 8863.849030 C = 9588.060293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.169 3.831 3 C -0.179 4.179 4 C -0.023 4.023 5 C -0.229 4.229 6 C 0.562 3.438 7 O -0.558 6.558 8 N -0.702 5.702 9 C 0.122 3.878 10 C 0.433 3.567 11 O -0.623 6.623 12 N -0.558 5.558 13 C -0.338 4.338 14 H 0.088 0.912 15 C -0.011 4.011 16 N -0.917 5.917 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.269 1.269 21 C 0.361 3.639 22 O -0.478 6.478 23 N -0.531 5.531 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.186 0.814 28 H 0.160 0.840 29 H 0.413 0.587 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.399 0.601 33 H 0.280 0.720 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.109 -3.930 1.769 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.031 3.969 3 C -0.198 4.198 4 C -0.049 4.049 5 C -0.235 4.235 6 C 0.350 3.650 7 O -0.438 6.438 8 N -0.356 5.356 9 C -0.006 4.006 10 C 0.220 3.780 11 O -0.511 6.511 12 N -0.193 5.193 13 C -0.467 4.467 14 H 0.106 0.894 15 C -0.211 4.211 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.194 1.194 21 C 0.181 3.819 22 O -0.288 6.288 23 N -0.252 5.252 24 H 0.115 0.885 25 H 0.097 0.903 26 H 0.128 0.872 27 H 0.203 0.797 28 H 0.177 0.823 29 H 0.252 0.748 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -20.363 -4.837 1.190 20.963 hybrid contribution 1.574 1.080 0.402 1.951 sum -18.789 -3.758 1.592 19.227 Atomic orbital electron populations 1.20976 0.85289 1.05300 1.04744 1.22046 0.98897 0.86846 0.89079 1.22340 0.93624 1.00942 1.02872 1.22093 0.95779 0.96711 0.90298 1.20946 0.93226 0.95760 1.13616 1.18116 0.87018 0.83508 0.76383 1.90778 1.72581 1.29347 1.51078 1.45553 1.06087 1.09632 1.74366 1.20809 0.81084 0.94231 1.04479 1.20346 0.83020 0.90918 0.83711 1.90461 1.58341 1.44175 1.58114 1.41839 1.05298 1.08936 1.63273 1.19720 0.91441 0.85075 1.50486 0.89372 1.26144 0.95689 1.03575 0.95722 1.69678 1.04677 1.32129 1.49166 0.84925 0.77125 0.76771 0.79162 1.19364 1.19743 1.19443 1.19251 0.86631 0.85020 0.91027 1.84660 1.76681 1.32215 1.35212 1.67220 1.08715 1.32026 1.17255 0.88541 0.90338 0.87163 0.79699 0.82283 0.74777 0.88406 0.88752 0.76697 0.91047 0.72113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.16 71.24 0.72 -0.24 16 2 C 0.17 2.94 6.78 42.58 0.29 3.23 16 3 C -0.18 -2.66 9.71 22.32 0.22 -2.44 16 4 C -0.02 -0.47 9.64 22.72 0.22 -0.25 16 5 C -0.23 -6.20 5.90 -19.91 -0.12 -6.31 16 6 C 0.56 18.36 7.77 86.69 0.67 19.03 16 7 O -0.56 -21.22 15.19 16.80 0.26 -20.96 16 8 N -0.70 -22.97 5.48 -470.00 -2.58 -25.54 16 9 C 0.12 4.39 6.15 85.63 0.53 4.91 16 10 C 0.43 19.55 7.85 87.66 0.69 20.24 16 11 O -0.62 -31.11 15.24 -3.08 -0.05 -31.16 16 12 N -0.56 -27.61 5.29 -306.98 -1.62 -29.23 16 13 C -0.34 -18.33 9.68 84.04 0.81 -17.51 16 14 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 15 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 16 N -0.92 -48.36 13.05 21.66 0.28 -48.07 16 17 Si 1.00 41.13 29.55 68.60 2.03 43.16 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 21 C 0.36 9.96 7.77 85.13 0.66 10.62 16 22 O -0.48 -13.55 11.66 -66.39 -0.77 -14.33 16 23 N -0.53 -13.00 10.28 -296.05 -3.04 -16.04 16 24 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.11 0.38 8.07 -2.39 -0.02 0.36 16 27 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 28 H 0.16 2.79 6.52 -2.91 -0.02 2.77 16 29 H 0.41 12.83 5.54 -92.71 -0.51 12.31 16 30 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 31 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 33 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 34 H 0.42 8.39 9.06 -74.06 -0.67 7.72 16 Total: -1.00 -71.53 307.16 -1.06 -72.59 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -0.73 Total: 38.38 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 5.16 Total: 31.21 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -6.96 Total: -118.89 kcal Atomic # 8 Polarization: -65.88 SS G_CDS: -0.57 Total: -66.45 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -71.53 -1.06 -72.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341882037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.309 kcal (2) G-P(sol) polarization free energy of solvation -71.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds