Wall clock time and date at job start Tue Mar 31 2020 01:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38548 * 120.00929 * 2 1 4 4 C 1.40126 * 117.80953 * 180.02562 * 3 2 1 5 5 C 1.48027 * 121.15123 * 180.02562 * 4 3 2 6 6 O 1.21430 * 120.00063 * 359.97438 * 5 4 3 7 7 O 1.34675 * 120.00075 * 180.02562 * 5 4 3 8 8 C 1.45203 * 116.99915 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46630 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00678 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99905 * 180.02562 * 9 8 7 12 12 C 1.46492 * 120.00381 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47471 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99785 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00353 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99647 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00130 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46918 * 60.00475 * 17 15 13 19 19 H 1.48498 * 109.47186 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47518 * 300.00650 * 17 15 13 21 21 C 1.39808 * 117.69546 * 0.02562 * 4 3 2 22 22 N 1.31897 * 119.64883 * 359.97438 * 21 4 3 23 23 N 1.28274 * 122.33639 * 359.97438 * 22 21 4 24 24 H 1.08998 * 109.47462 * 269.97567 * 1 2 3 25 25 H 1.09003 * 109.47200 * 29.97984 * 1 2 3 26 26 H 1.08994 * 109.46855 * 149.97486 * 1 2 3 27 27 H 1.07994 * 121.10039 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.47131 * 300.00215 * 8 7 5 29 29 H 1.08996 * 109.46990 * 60.00210 * 8 7 5 30 30 H 0.97004 * 119.99742 * 0.02562 * 11 9 8 31 31 H 1.08998 * 109.47530 * 300.00272 * 12 11 9 32 32 H 1.09009 * 109.46640 * 60.00187 * 12 11 9 33 33 H 0.97000 * 120.00042 * 180.02562 * 16 15 13 34 34 H 1.08003 * 120.17241 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1997 0.0000 4 6 3.6002 1.1460 -0.0006 5 6 4.4140 2.3825 0.0000 6 8 3.8694 3.4678 0.0004 7 8 5.7584 2.3038 -0.0011 8 6 6.4921 3.5568 -0.0011 9 6 7.9720 3.2723 -0.0030 10 8 8.3693 2.1264 -0.0038 11 7 8.8541 4.2913 -0.0028 12 6 10.2927 4.0148 -0.0041 13 6 11.0542 5.3152 -0.0042 14 1 10.5199 6.2539 -0.0029 15 6 12.4330 5.3068 -0.0048 16 7 13.0836 4.1639 -0.0057 17 14 13.3769 6.9188 -0.0056 18 1 13.0235 7.6999 1.2069 19 1 14.8352 6.6385 -0.0068 20 1 13.0223 7.6994 -1.2180 21 6 4.2020 -0.1160 -0.0016 22 7 3.4482 -1.1983 -0.0016 23 7 2.1667 -1.1419 -0.0001 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6782 2.1453 0.0004 28 1 6.2316 4.1304 -0.8905 29 1 6.2330 4.1295 0.8894 30 1 8.5364 5.2078 -0.0010 31 1 10.5532 3.4409 0.8852 32 1 10.5518 3.4424 -0.8948 33 1 14.0535 4.1579 -0.0058 34 1 5.2784 -0.2040 -0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343402652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:11 Heat of formation + Delta-G solvation = -66.032020 kcal Electronic energy + Delta-G solvation = -20080.972307 eV Core-core repulsion = 16593.805685 eV Total energy + Delta-G solvation = -3487.166621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.70411 -40.51472 -38.82442 -36.69598 -34.45276 -34.33337 -33.78654 -32.47367 -29.47400 -28.77102 -27.03631 -25.63717 -24.27108 -22.68898 -21.38523 -20.06480 -18.82062 -18.04003 -17.22924 -16.97308 -16.93782 -16.50668 -15.63127 -15.60584 -15.20976 -14.73223 -14.63363 -14.20568 -13.89083 -13.43996 -13.21820 -13.15687 -12.90542 -12.70714 -12.04826 -11.88063 -11.41232 -11.31124 -11.07317 -11.00092 -10.89307 -10.76076 -10.39130 -10.19725 -10.15336 -9.50905 -9.30192 -8.83177 -8.06963 -6.23732 -4.31673 -0.24315 0.40700 1.96235 2.01240 3.05262 3.11600 3.21180 3.26321 3.27572 3.51727 3.68276 3.88984 4.02640 4.22888 4.29866 4.32520 4.74598 4.80207 4.98258 5.04709 5.06304 5.12755 5.19653 5.22371 5.45407 5.47274 5.71084 5.94179 7.13618 7.18759 7.27379 7.39631 7.54868 7.86887 8.21956 8.41011 8.63833 8.87391 9.34780 10.86272 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.053812 B = 0.002624 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.201656 B =10669.591681 C =11164.045457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.061 3.939 3 C -0.052 4.052 4 C -0.114 4.114 5 C 0.514 3.486 6 O -0.494 6.494 7 O -0.319 6.319 8 C 0.050 3.950 9 C 0.499 3.501 10 O -0.532 6.532 11 N -0.705 5.705 12 C 0.251 3.749 13 C -0.547 4.547 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.090 3.910 22 N -0.238 5.238 23 N -0.221 5.221 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.166 0.834 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.393 0.607 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.268 0.732 34 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.451 -3.036 0.031 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.083 4.083 3 C -0.081 4.081 4 C -0.127 4.127 5 C 0.357 3.643 6 O -0.381 6.381 7 O -0.233 6.233 8 C -0.027 4.027 9 C 0.282 3.718 10 O -0.410 6.410 11 N -0.355 5.355 12 C 0.131 3.869 13 C -0.586 4.586 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.521 5.521 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.074 4.074 22 N -0.078 5.078 23 N -0.065 5.065 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.183 0.817 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.226 0.774 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -23.092 -5.271 0.027 23.686 hybrid contribution 0.647 3.128 0.013 3.194 sum -22.446 -2.143 0.039 22.548 Atomic orbital electron populations 1.20725 0.86555 1.04532 1.04078 1.22964 0.99567 0.89561 0.96240 1.22532 0.92518 1.01129 0.91932 1.20328 0.93930 0.93419 1.04990 1.20719 0.81752 0.88432 0.73443 1.90860 1.73152 1.29105 1.45032 1.86571 1.17773 1.35927 1.83018 1.23001 0.90996 0.83713 1.05035 1.19810 0.86394 0.86614 0.78993 1.90723 1.79875 1.20815 1.49559 1.46371 1.09103 1.07773 1.72223 1.19194 0.72259 0.97309 0.98108 1.21156 0.91616 0.91944 1.53850 0.91806 1.24953 0.97480 0.96977 0.94554 1.69957 1.08532 1.25194 1.48413 0.86439 0.78689 0.82852 0.78727 1.20022 1.21021 1.20025 1.24965 1.03772 0.87933 0.90696 1.73186 0.98840 1.26700 1.09066 1.72852 1.02274 1.25013 1.06403 0.89434 0.89858 0.89470 0.81693 0.88049 0.88043 0.77366 0.95173 0.95176 0.92255 0.78924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 10.19 36.01 0.37 -0.09 16 2 C 0.06 0.52 6.86 -82.46 -0.57 -0.05 16 3 C -0.05 -0.44 9.44 -38.76 -0.37 -0.80 16 4 C -0.11 -1.22 5.92 -104.59 -0.62 -1.84 16 5 C 0.51 6.33 7.93 34.74 0.28 6.61 16 6 O -0.49 -6.57 16.28 -19.21 -0.31 -6.88 16 7 O -0.32 -4.49 9.12 -47.10 -0.43 -4.92 16 8 C 0.05 0.68 5.95 36.00 0.21 0.89 16 9 C 0.50 9.35 7.91 -10.99 -0.09 9.27 16 10 O -0.53 -12.30 16.50 -14.10 -0.23 -12.53 16 11 N -0.70 -13.82 5.55 -61.48 -0.34 -14.17 16 12 C 0.25 6.38 5.43 -5.20 -0.03 6.35 16 13 C -0.55 -14.31 9.28 -34.44 -0.32 -14.63 16 14 H 0.06 1.54 7.60 -52.48 -0.40 1.15 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.88 -25.42 13.29 55.43 0.74 -24.69 16 17 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.09 1.02 10.93 -16.94 -0.19 0.83 16 22 N -0.24 -2.97 11.49 30.79 0.35 -2.62 16 23 N -0.22 -2.53 11.40 33.57 0.38 -2.15 16 24 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.17 1.03 7.80 -52.49 -0.41 0.62 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.39 6.39 8.32 -40.82 -0.34 6.05 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.85 8.14 -51.92 -0.42 0.42 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.19 2.03 7.71 -52.48 -0.40 1.63 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -33.47 316.44 -5.15 -38.62 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.64 Total: 1.08 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -1.41 Total: 8.18 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 1.13 Total: -43.62 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.98 Total: -24.34 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.47 -5.15 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343402652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.409 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds