Wall clock time and date at job start Tue Mar 31 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38601 * 119.54703 * 2 1 4 4 C 1.38587 * 119.34935 * 179.73001 * 3 2 1 5 5 N 1.48015 * 120.75408 * 180.26808 * 4 3 2 6 6 O 1.21802 * 119.99327 * 180.27312 * 5 4 3 7 7 O 1.21794 * 120.00060 * 0.26852 * 5 4 3 8 8 C 1.38637 * 118.48674 * 0.53080 * 4 3 2 9 9 C 1.39266 * 119.06036 * 359.73287 * 8 4 3 10 10 C 1.48167 * 119.72203 * 179.97438 * 9 8 4 11 11 O 1.21518 * 119.99700 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00119 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00282 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47439 * 34.99738 * 13 12 10 15 15 C 1.52998 * 109.47332 * 274.99941 * 13 12 10 16 16 C 1.50699 * 109.47653 * 154.99637 * 13 12 10 17 17 H 1.08007 * 119.99850 * 35.00445 * 16 13 12 18 18 C 1.37875 * 120.00344 * 215.00084 * 16 13 12 19 19 N 1.31513 * 119.99787 * 184.91392 * 18 16 13 20 20 Si 1.86793 * 120.00076 * 4.91949 * 18 16 13 21 21 H 1.48497 * 109.47352 * 84.82980 * 20 18 16 22 22 H 1.48495 * 109.47230 * 204.82812 * 20 18 16 23 23 H 1.48501 * 109.47265 * 324.82849 * 20 18 16 24 24 N 1.31497 * 119.54924 * 180.27195 * 2 1 3 25 25 H 1.08999 * 109.47107 * 269.73042 * 1 2 3 26 26 H 1.09003 * 109.47082 * 29.72987 * 1 2 3 27 27 H 1.09002 * 109.47159 * 149.73195 * 1 2 3 28 28 H 1.08003 * 120.32941 * 0.02562 * 3 2 1 29 29 H 1.07993 * 120.46472 * 179.70945 * 8 4 3 30 30 H 0.97008 * 119.99725 * 359.97438 * 12 10 9 31 31 H 1.09002 * 109.46998 * 55.03061 * 15 13 12 32 32 H 1.09003 * 109.47704 * 175.03399 * 15 13 12 33 33 H 1.08997 * 109.47160 * 295.03491 * 15 13 12 34 34 H 0.97006 * 119.99740 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5764 1.2010 0.0057 5 7 4.3376 2.4704 0.0118 6 8 5.5555 2.4500 0.0118 7 8 3.7463 3.5351 0.0168 8 6 4.2335 -0.0198 -0.0001 9 6 3.4821 -1.1924 -0.0056 10 6 4.1692 -2.5051 -0.0124 11 8 5.3834 -2.5553 -0.0126 12 7 3.4477 -3.6434 -0.0183 13 6 4.1270 -4.9412 -0.0245 14 1 5.0411 -4.8757 0.5657 15 6 4.4755 -5.3277 -1.4632 16 6 3.2190 -5.9865 0.5705 17 1 2.1527 -5.9317 0.4072 18 6 3.7492 -7.0127 1.3233 19 7 2.9701 -7.9774 1.7613 20 14 5.5742 -7.0327 1.7211 21 1 5.8272 -6.2035 2.9267 22 1 6.0090 -8.4287 1.9804 23 1 6.3373 -6.4820 0.5724 24 7 2.1556 -1.1439 -0.0054 25 1 -0.3633 -0.0048 1.0276 26 1 -0.3633 0.8924 -0.5096 27 1 -0.3633 -0.8876 -0.5180 28 1 1.6485 2.1399 0.0004 29 1 5.3126 -0.0607 -0.0006 30 1 2.4784 -3.6032 -0.0178 31 1 5.0593 -4.5300 -1.9225 32 1 5.0579 -6.2491 -1.4611 33 1 3.5576 -5.4794 -2.0312 34 1 3.3431 -8.6992 2.2912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443779064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:42 Heat of formation + Delta-G solvation = -6.571563 kcal Electronic energy + Delta-G solvation = -21038.402686 eV Core-core repulsion = 17553.814464 eV Total energy + Delta-G solvation = -3484.588222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.58223 -40.98837 -38.90006 -36.90657 -35.19924 -33.97464 -33.38898 -32.37878 -29.88428 -28.41588 -27.38440 -25.47557 -24.92495 -22.52286 -21.43016 -20.05407 -19.31433 -19.14451 -17.90114 -17.80889 -16.86090 -16.57902 -16.23736 -15.47608 -15.25095 -14.56997 -14.21468 -14.13842 -13.42926 -12.93266 -12.76134 -12.70644 -12.60748 -12.47225 -11.91621 -11.70043 -11.62675 -11.44539 -11.21445 -10.93870 -10.91388 -10.72500 -10.52603 -9.97821 -9.66661 -9.64861 -9.31929 -8.79902 -8.31763 -6.31778 -4.36673 -0.63406 0.10605 0.89344 0.96600 2.53020 3.16668 3.24737 3.28587 3.34512 3.53236 3.57816 3.92290 4.13001 4.20556 4.24726 4.64391 4.82121 4.95019 5.08814 5.16254 5.19821 5.23010 5.58493 5.77568 5.98043 6.21225 6.39705 6.54583 6.77297 6.98799 7.11563 7.22612 7.27722 7.36474 7.95926 8.38180 8.59207 8.71420 9.28699 10.79607 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024460 B = 0.004325 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.457389 B = 6473.077911 C = 7189.666325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.141 3.859 3 C -0.100 4.100 4 C -0.001 4.001 5 N 0.025 4.975 6 O -0.140 6.140 7 O -0.148 6.148 8 C -0.068 4.068 9 C 0.116 3.884 10 C 0.552 3.448 11 O -0.541 6.541 12 N -0.670 5.670 13 C 0.228 3.772 14 H 0.054 0.946 15 C -0.148 4.148 16 C -0.533 4.533 17 H 0.081 0.919 18 C 0.083 3.917 19 N -0.885 5.885 20 Si 0.873 3.127 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.259 1.259 24 N -0.418 5.418 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.168 0.832 29 H 0.178 0.822 30 H 0.405 0.595 31 H 0.030 0.970 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 17.104 -3.887 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.000 4.000 3 C -0.121 4.121 4 C -0.090 4.090 5 N 0.548 4.452 6 O -0.359 6.359 7 O -0.365 6.365 8 C -0.090 4.090 9 C -0.025 4.025 10 C 0.333 3.667 11 O -0.419 6.419 12 N -0.318 5.318 13 C 0.126 3.874 14 H 0.071 0.929 15 C -0.207 4.207 16 C -0.571 4.571 17 H 0.099 0.901 18 C -0.122 4.122 19 N -0.521 5.521 20 Si 0.699 3.301 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.184 1.184 24 N -0.131 5.131 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.186 0.814 29 H 0.195 0.805 30 H 0.241 0.759 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.577 15.393 -3.786 16.499 hybrid contribution 1.127 1.075 0.345 1.595 sum -3.450 16.468 -3.441 17.174 Atomic orbital electron populations 1.20846 0.86234 1.04779 1.04429 1.21551 0.98201 0.86048 0.94150 1.22139 0.91411 1.02209 0.96372 1.21410 0.92459 0.84780 1.10400 1.43494 1.01415 1.02298 0.97978 1.94607 0.94895 1.94033 1.52330 1.94542 1.71487 1.17687 1.52781 1.22051 1.04614 0.89059 0.93306 1.21792 0.88716 0.94947 0.97018 1.17700 0.86838 0.82889 0.79263 1.90792 1.12647 1.86516 1.51923 1.46666 1.11052 1.05669 1.68363 1.19307 0.94448 0.79453 0.94196 0.92858 1.22225 1.00225 0.99900 0.98341 1.20965 0.95289 1.07747 1.33049 0.90080 1.24931 0.98092 0.94924 0.94243 1.69874 1.35936 1.11204 1.35046 0.86910 0.85579 0.77522 0.80053 1.19769 1.20994 1.18382 1.67592 1.08776 1.29714 1.07049 0.89111 0.89778 0.88970 0.81420 0.80483 0.75904 0.95133 0.92498 0.93153 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.17 36.01 0.37 -0.28 16 2 C 0.14 1.38 6.78 -82.60 -0.56 0.82 16 3 C -0.10 -0.93 9.27 -39.32 -0.36 -1.30 16 4 C 0.00 -0.01 6.90 -79.67 -0.55 -0.56 16 5 N 0.02 0.32 4.45 34.10 0.15 0.47 16 6 O -0.14 -1.97 18.55 -29.46 -0.55 -2.52 16 7 O -0.15 -1.86 18.54 -29.46 -0.55 -2.41 16 8 C -0.07 -0.93 9.15 -39.05 -0.36 -1.29 16 9 C 0.12 1.74 6.75 -83.01 -0.56 1.18 16 10 C 0.55 10.41 7.78 -12.18 -0.09 10.31 16 11 O -0.54 -11.66 15.99 5.35 0.09 -11.57 16 12 N -0.67 -13.30 5.06 -55.78 -0.28 -13.58 16 13 C 0.23 5.24 2.22 -69.09 -0.15 5.09 16 14 H 0.05 1.33 4.73 -51.93 -0.25 1.08 16 15 C -0.15 -3.12 9.47 37.16 0.35 -2.77 16 16 C -0.53 -13.89 9.05 -34.44 -0.31 -14.20 16 17 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 18 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 19 N -0.88 -25.38 13.96 55.43 0.77 -24.61 16 20 Si 0.87 20.90 26.99 -169.99 -4.59 16.31 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.26 -6.08 6.82 56.52 0.39 -5.69 16 24 N -0.42 -5.49 9.45 -6.06 -0.06 -5.55 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.17 1.08 7.70 -52.48 -0.40 0.67 16 29 H 0.18 2.43 7.29 -52.49 -0.38 2.05 16 30 H 0.41 7.38 7.92 -40.82 -0.32 7.06 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -30.35 309.80 -6.13 -36.48 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.46 Total: 3.13 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.33 Total: -0.82 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.59 Total: -43.27 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.01 Total: -16.50 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.59 Total: 16.31 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.35 -6.13 -36.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443779064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.909 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds