Wall clock time and date at job start Tue Mar 31 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38601 * 119.54703 * 2 1 4 4 C 1.38587 * 119.34935 * 179.73001 * 3 2 1 5 5 N 1.48015 * 120.75408 * 180.26808 * 4 3 2 6 6 O 1.21802 * 119.99327 * 180.27312 * 5 4 3 7 7 O 1.21794 * 120.00060 * 0.26852 * 5 4 3 8 8 C 1.38637 * 118.48674 * 0.53080 * 4 3 2 9 9 C 1.39266 * 119.06036 * 359.73287 * 8 4 3 10 10 C 1.48167 * 119.72203 * 179.97438 * 9 8 4 11 11 O 1.21518 * 119.99700 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00119 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00282 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47439 * 34.99738 * 13 12 10 15 15 C 1.52998 * 109.47332 * 274.99941 * 13 12 10 16 16 C 1.50699 * 109.47653 * 154.99637 * 13 12 10 17 17 H 1.08007 * 119.99850 * 35.00445 * 16 13 12 18 18 C 1.37875 * 120.00344 * 215.00084 * 16 13 12 19 19 N 1.31513 * 119.99787 * 184.91392 * 18 16 13 20 20 Si 1.86793 * 120.00076 * 4.91949 * 18 16 13 21 21 H 1.48497 * 109.47352 * 84.82980 * 20 18 16 22 22 H 1.48495 * 109.47230 * 204.82812 * 20 18 16 23 23 H 1.48501 * 109.47265 * 324.82849 * 20 18 16 24 24 N 1.31497 * 119.54924 * 180.27195 * 2 1 3 25 25 H 1.08999 * 109.47107 * 269.73042 * 1 2 3 26 26 H 1.09003 * 109.47082 * 29.72987 * 1 2 3 27 27 H 1.09002 * 109.47159 * 149.73195 * 1 2 3 28 28 H 1.08003 * 120.32941 * 0.02562 * 3 2 1 29 29 H 1.07993 * 120.46472 * 179.70945 * 8 4 3 30 30 H 0.97008 * 119.99725 * 359.97438 * 12 10 9 31 31 H 1.09002 * 109.46998 * 55.03061 * 15 13 12 32 32 H 1.09003 * 109.47704 * 175.03399 * 15 13 12 33 33 H 1.08997 * 109.47160 * 295.03491 * 15 13 12 34 34 H 0.97006 * 119.99740 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5764 1.2010 0.0057 5 7 4.3376 2.4704 0.0118 6 8 5.5555 2.4500 0.0118 7 8 3.7463 3.5351 0.0168 8 6 4.2335 -0.0198 -0.0001 9 6 3.4821 -1.1924 -0.0056 10 6 4.1692 -2.5051 -0.0124 11 8 5.3834 -2.5553 -0.0126 12 7 3.4477 -3.6434 -0.0183 13 6 4.1270 -4.9412 -0.0245 14 1 5.0411 -4.8757 0.5657 15 6 4.4755 -5.3277 -1.4632 16 6 3.2190 -5.9865 0.5705 17 1 2.1527 -5.9317 0.4072 18 6 3.7492 -7.0127 1.3233 19 7 2.9701 -7.9774 1.7613 20 14 5.5742 -7.0327 1.7211 21 1 5.8272 -6.2035 2.9267 22 1 6.0090 -8.4287 1.9804 23 1 6.3373 -6.4820 0.5724 24 7 2.1556 -1.1439 -0.0054 25 1 -0.3633 -0.0048 1.0276 26 1 -0.3633 0.8924 -0.5096 27 1 -0.3633 -0.8876 -0.5180 28 1 1.6485 2.1399 0.0004 29 1 5.3126 -0.0607 -0.0006 30 1 2.4784 -3.6032 -0.0178 31 1 5.0593 -4.5300 -1.9225 32 1 5.0579 -6.2491 -1.4611 33 1 3.5576 -5.4794 -2.0312 34 1 3.3431 -8.6992 2.2912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443779064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:42 Heat of formation + Delta-G solvation = -27.050662 kcal Electronic energy + Delta-G solvation = -21039.290727 eV Core-core repulsion = 17553.814464 eV Total energy + Delta-G solvation = -3485.476263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.57881 -42.04893 -40.35379 -37.91895 -36.93153 -34.98429 -34.53786 -34.12066 -31.57857 -29.22587 -28.27411 -27.38899 -26.18608 -23.48071 -22.86086 -21.63642 -20.59895 -20.14682 -19.27552 -18.89681 -18.26310 -17.79066 -17.46076 -16.89771 -16.53332 -16.22523 -15.45725 -15.16485 -14.92933 -14.57810 -14.37288 -13.66753 -13.56961 -13.31761 -13.19947 -13.07751 -12.94174 -12.83980 -12.68912 -12.52029 -12.47416 -11.90655 -11.88830 -11.64556 -11.29981 -11.08870 -10.86218 -10.58466 -9.98918 -8.41724 -6.49090 -1.60493 -0.89370 -0.08381 -0.00970 1.27911 1.33589 1.37797 1.43067 1.92871 2.24784 2.29558 2.63263 2.92513 3.02626 3.11148 3.28654 3.73666 3.86599 4.03643 4.22592 4.38534 4.64442 4.68178 4.75223 4.78388 4.82090 4.96274 5.01403 5.28803 5.29828 5.39426 5.55718 6.00579 6.18955 6.24900 6.54853 6.68160 7.06553 7.21708 8.72994 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024460 B = 0.004325 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.457389 B = 6473.077911 C = 7189.666325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.148 3.852 3 C -0.065 4.065 4 C -0.008 4.008 5 N 0.026 4.974 6 O -0.190 6.190 7 O -0.112 6.112 8 C -0.074 4.074 9 C 0.096 3.904 10 C 0.554 3.446 11 O -0.573 6.573 12 N -0.674 5.674 13 C 0.231 3.769 14 H 0.036 0.964 15 C -0.142 4.142 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.037 3.963 19 N -0.926 5.926 20 Si 0.924 3.076 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.253 1.253 24 N -0.432 5.432 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.211 0.789 29 H 0.165 0.835 30 H 0.413 0.587 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 19.586 -4.302 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.006 3.994 3 C -0.086 4.086 4 C -0.098 4.098 5 N 0.548 4.452 6 O -0.396 6.396 7 O -0.340 6.340 8 C -0.096 4.096 9 C -0.042 4.042 10 C 0.338 3.662 11 O -0.454 6.454 12 N -0.322 5.322 13 C 0.128 3.872 14 H 0.054 0.946 15 C -0.201 4.201 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.164 4.164 19 N -0.564 5.564 20 Si 0.749 3.251 21 H -0.200 1.200 22 H -0.201 1.201 23 H -0.177 1.177 24 N -0.146 5.146 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.106 0.894 28 H 0.228 0.772 29 H 0.183 0.817 30 H 0.249 0.751 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.978 17.828 -4.212 19.269 hybrid contribution 1.335 0.517 0.450 1.501 sum -4.643 18.345 -3.762 19.294 Atomic orbital electron populations 1.21066 0.82985 1.06387 1.05758 1.22279 0.99889 0.85052 0.92206 1.22673 0.90049 1.03757 0.92159 1.21438 0.93299 0.83710 1.11314 1.43589 1.01345 1.02554 0.97704 1.94640 0.95462 1.94257 1.55230 1.94506 1.71219 1.17918 1.50382 1.21835 1.04113 0.89594 0.94052 1.20958 0.89613 0.93013 1.00591 1.18085 0.86497 0.83926 0.77732 1.90759 1.14187 1.87367 1.53076 1.46345 1.11351 1.05172 1.69290 1.19076 0.93167 0.80143 0.94854 0.94583 1.22121 1.00796 1.00027 0.97127 1.21121 0.94694 1.08356 1.32517 0.92357 1.25578 1.01600 0.94769 0.94480 1.69968 1.37660 1.12188 1.36591 0.86094 0.81480 0.77768 0.79808 1.20016 1.20088 1.17688 1.67556 1.07744 1.31773 1.07510 0.87655 0.86219 0.89394 0.77229 0.81735 0.75055 0.94207 0.92743 0.92203 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.17 71.24 0.72 -0.07 16 2 C 0.15 2.35 6.78 42.70 0.29 2.64 16 3 C -0.07 -0.93 9.27 22.44 0.21 -0.72 16 4 C -0.01 -0.17 6.90 36.55 0.25 0.08 16 5 N 0.03 0.62 4.45 -46.04 -0.21 0.41 16 6 O -0.19 -5.35 18.55 18.88 0.35 -5.00 16 7 O -0.11 -2.42 18.54 18.89 0.35 -2.07 16 8 C -0.07 -1.99 9.15 22.61 0.21 -1.78 16 9 C 0.10 2.86 6.75 41.89 0.28 3.14 16 10 C 0.55 21.19 7.78 86.88 0.68 21.87 16 11 O -0.57 -25.35 15.99 -3.77 -0.06 -25.41 16 12 N -0.67 -27.00 5.06 -448.69 -2.27 -29.27 16 13 C 0.23 10.71 2.22 44.25 0.10 10.81 16 14 H 0.04 1.81 4.73 -2.39 -0.01 1.80 16 15 C -0.14 -5.94 9.47 71.98 0.68 -5.26 16 16 C -0.53 -28.04 9.05 25.60 0.23 -27.81 16 17 H 0.06 3.30 8.06 -2.91 -0.02 3.27 16 18 C 0.04 2.03 5.47 84.65 0.46 2.49 16 19 N -0.93 -54.09 13.96 21.45 0.30 -53.79 16 20 Si 0.92 43.47 26.99 68.60 1.85 45.32 16 21 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.25 -11.53 6.82 99.48 0.68 -10.85 16 24 N -0.43 -10.62 9.45 -173.08 -1.64 -12.26 16 25 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.12 0.12 8.07 -2.39 -0.02 0.10 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.21 1.26 7.70 -2.91 -0.02 1.24 16 29 H 0.17 4.76 7.29 -2.91 -0.02 4.74 16 30 H 0.41 15.16 7.92 -92.70 -0.73 14.43 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.27 14.90 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -67.48 309.80 3.19 -64.30 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.39 Total: 12.37 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.11 Total: 5.40 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -3.81 Total: -94.91 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: 0.64 Total: -32.48 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.85 Total: 45.32 kcal Total: -67.48 3.19 -64.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443779064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.248 kcal (2) G-P(sol) polarization free energy of solvation -67.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds