Wall clock time and date at job start Tue Mar 31 2020 01:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38599 * 119.55065 * 2 1 4 4 C 1.38592 * 119.35224 * 179.97438 * 3 2 1 5 5 N 1.48007 * 120.75608 * 180.02562 * 4 3 2 6 6 O 1.21802 * 120.00044 * 359.97438 * 5 4 3 7 7 O 1.21800 * 120.00401 * 180.02562 * 5 4 3 8 8 C 1.38629 * 118.48435 * 359.74607 * 4 3 2 9 9 C 1.39272 * 119.06382 * 0.49583 * 8 4 3 10 10 C 1.48161 * 119.72178 * 179.77120 * 9 8 4 11 11 O 1.21525 * 120.00256 * 359.72430 * 10 9 8 12 12 N 1.34784 * 120.00196 * 179.72664 * 10 9 8 13 13 C 1.46497 * 120.00075 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47049 * 324.99133 * 13 12 10 15 15 C 1.52997 * 109.47188 * 85.00024 * 13 12 10 16 16 C 1.50706 * 109.46582 * 204.99875 * 13 12 10 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 12 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 13 20 20 Si 1.86789 * 120.00458 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47356 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.47162 * 209.99853 * 20 18 16 23 23 H 1.48503 * 109.47180 * 329.99546 * 20 18 16 24 24 N 1.31497 * 119.54904 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46733 * 270.02275 * 1 2 3 26 26 H 1.09003 * 109.46646 * 30.02062 * 1 2 3 27 27 H 1.08993 * 109.47023 * 150.02157 * 1 2 3 28 28 H 1.08002 * 120.32802 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.46613 * 180.27036 * 8 4 3 30 30 H 0.96996 * 119.99132 * 359.97438 * 12 10 9 31 31 H 1.09002 * 109.47153 * 299.99573 * 15 13 12 32 32 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 33 33 H 1.09004 * 109.47261 * 59.99745 * 15 13 12 34 34 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5765 1.2009 0.0005 5 7 4.3377 2.4702 0.0011 6 8 3.7464 3.5350 0.0007 7 8 5.5556 2.4500 0.0011 8 6 4.2334 -0.0198 0.0065 9 6 3.4820 -1.1925 0.0011 10 6 4.1691 -2.5052 0.0022 11 8 5.3833 -2.5555 0.0027 12 7 3.4475 -3.6436 0.0026 13 6 4.1269 -4.9415 0.0042 14 1 5.0416 -4.8735 -0.5847 15 6 4.4737 -5.3338 1.4418 16 6 3.2194 -5.9842 -0.5961 17 1 2.2349 -5.7077 -0.9436 18 6 3.6461 -7.2910 -0.7016 19 7 2.8539 -8.2010 -1.2250 20 14 5.3485 -7.7693 -0.0999 21 1 5.2744 -8.1698 1.3281 22 1 5.8574 -8.9069 -0.9074 23 1 6.2672 -6.6112 -0.2422 24 7 2.1555 -1.1439 0.0005 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5135 28 1 1.6485 2.1399 0.0004 29 1 5.3126 -0.0609 0.0115 30 1 2.4784 -3.6033 0.0025 31 1 5.1301 -4.5796 1.8760 32 1 4.9788 -6.2997 1.4430 33 1 3.5589 -5.4018 2.0306 34 1 3.1539 -9.1206 -1.2989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443779066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:44 Heat of formation + Delta-G solvation = 2.197600 kcal Electronic energy + Delta-G solvation = -21021.405231 eV Core-core repulsion = 17537.197268 eV Total energy + Delta-G solvation = -3484.207963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59943 -41.01932 -38.95709 -36.92086 -35.31553 -34.00770 -33.42522 -32.38807 -29.99924 -28.44287 -27.40407 -25.41420 -24.93958 -22.55010 -21.59485 -20.16853 -19.31394 -19.15981 -17.91629 -17.76590 -16.81198 -16.60278 -16.18536 -15.53556 -15.29870 -14.77344 -14.24984 -14.20062 -13.41230 -13.11044 -12.84532 -12.76727 -12.72072 -12.29603 -11.95197 -11.92729 -11.70523 -11.45924 -11.43361 -10.94946 -10.91156 -10.59426 -10.27020 -9.92200 -9.69274 -9.53794 -9.34286 -8.85322 -8.37153 -6.27913 -4.31679 -0.65557 0.07698 0.87447 0.94520 2.49500 3.16728 3.18053 3.30821 3.33831 3.48690 3.54901 3.89779 4.10166 4.17991 4.24885 4.62221 4.79767 4.96126 5.06336 5.13496 5.17061 5.18135 5.56250 5.75434 5.96179 6.19726 6.24931 6.42615 6.70846 6.94512 7.08551 7.12463 7.25980 7.36708 7.96048 8.35729 8.53231 8.72376 9.31237 10.84041 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027544 B = 0.004128 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.315002 B = 6782.033686 C = 7583.802466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.142 3.858 3 C -0.099 4.099 4 C -0.001 4.001 5 N 0.024 4.976 6 O -0.148 6.148 7 O -0.139 6.139 8 C -0.068 4.068 9 C 0.115 3.885 10 C 0.555 3.445 11 O -0.537 6.537 12 N -0.668 5.668 13 C 0.234 3.766 14 H 0.053 0.947 15 C -0.162 4.162 16 C -0.538 4.538 17 H 0.082 0.918 18 C 0.080 3.920 19 N -0.889 5.889 20 Si 0.885 3.115 21 H -0.275 1.275 22 H -0.293 1.293 23 H -0.261 1.261 24 N -0.418 5.418 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.169 0.831 29 H 0.178 0.822 30 H 0.407 0.593 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 17.750 3.557 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.001 3.999 3 C -0.120 4.120 4 C -0.090 4.090 5 N 0.548 4.452 6 O -0.365 6.365 7 O -0.358 6.358 8 C -0.089 4.089 9 C -0.025 4.025 10 C 0.337 3.663 11 O -0.415 6.415 12 N -0.315 5.315 13 C 0.131 3.869 14 H 0.071 0.929 15 C -0.221 4.221 16 C -0.576 4.576 17 H 0.100 0.900 18 C -0.124 4.124 19 N -0.526 5.526 20 Si 0.714 3.286 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.186 1.186 24 N -0.132 5.132 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.186 0.814 29 H 0.196 0.804 30 H 0.243 0.757 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.500 16.036 3.496 17.018 hybrid contribution 1.052 0.770 0.326 1.343 sum -3.448 16.806 3.822 17.576 Atomic orbital electron populations 1.20850 0.86207 1.04922 1.04348 1.21549 0.98210 0.86025 0.94127 1.22148 0.91416 1.02228 0.96245 1.21401 0.92456 0.84802 1.10372 1.43489 1.01418 1.02289 0.98001 1.94546 1.71496 1.17652 1.52776 1.94607 0.94880 1.94029 1.52301 1.22041 1.04619 0.89042 0.93246 1.21708 0.88716 0.94830 0.97227 1.17599 0.86753 0.82832 0.79163 1.90804 1.12595 1.86492 1.51565 1.46137 1.11024 1.05550 1.68812 1.19282 0.94800 0.79437 0.93389 0.92913 1.22464 1.00526 0.99749 0.99316 1.20986 1.02739 0.91971 1.41895 0.89972 1.24813 0.97315 0.96024 0.94229 1.69861 1.36421 1.02582 1.43715 0.86888 0.84913 0.78481 0.78321 1.20184 1.21997 1.18608 1.67587 1.08752 1.29767 1.07044 0.89170 0.89727 0.88886 0.81386 0.80444 0.75690 0.94412 0.93082 0.92561 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.17 36.00 0.37 -0.26 16 2 C 0.14 1.35 6.78 -82.60 -0.56 0.79 16 3 C -0.10 -0.90 9.27 -39.32 -0.36 -1.26 16 4 C 0.00 -0.01 6.90 -79.68 -0.55 -0.56 16 5 N 0.02 0.31 4.45 34.09 0.15 0.46 16 6 O -0.15 -1.83 18.54 -29.46 -0.55 -2.38 16 7 O -0.14 -1.93 18.55 -29.46 -0.55 -2.48 16 8 C -0.07 -0.89 9.15 -39.05 -0.36 -1.25 16 9 C 0.12 1.69 6.75 -83.01 -0.56 1.13 16 10 C 0.56 10.27 7.78 -12.18 -0.09 10.17 16 11 O -0.54 -11.37 15.99 5.34 0.09 -11.29 16 12 N -0.67 -13.09 5.06 -55.78 -0.28 -13.37 16 13 C 0.23 5.40 2.15 -69.08 -0.15 5.25 16 14 H 0.05 1.33 6.63 -51.93 -0.34 0.98 16 15 C -0.16 -3.50 8.96 37.16 0.33 -3.17 16 16 C -0.54 -14.16 9.31 -34.44 -0.32 -14.48 16 17 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 18 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 19 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16 20 Si 0.88 21.11 24.37 -169.99 -4.14 16.97 16 21 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 24 N -0.42 -5.37 9.45 -6.06 -0.06 -5.42 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.17 1.04 7.70 -52.49 -0.40 0.63 16 29 H 0.18 2.37 7.29 -52.48 -0.38 1.99 16 30 H 0.41 7.33 7.87 -40.82 -0.32 7.01 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 303.23 15.07 4.57 4.57 Total: -1.00 -30.57 303.23 -5.68 -36.25 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.33 Total: 3.20 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.35 Total: -1.53 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.59 Total: -43.31 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -1.01 Total: -16.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.14 Total: 16.97 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.57 -5.68 -36.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443779066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.443 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds