Wall clock time and date at job start Tue Mar 31 2020 01:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86806 * 119.99552 * 2 1 4 4 H 1.48499 * 109.47047 * 269.99160 * 3 2 1 5 5 H 1.48499 * 109.47156 * 29.99631 * 3 2 1 6 6 H 1.48504 * 109.46692 * 149.99367 * 3 2 1 7 7 C 1.40048 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99765 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00164 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99852 * 0.02562 * 9 7 2 11 11 N 1.34770 * 120.00207 * 180.02562 * 9 7 2 12 12 C 1.46503 * 120.00204 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.47036 * 179.97438 * 12 11 9 14 14 C 1.35544 * 120.49688 * 95.00731 * 13 12 11 15 15 N 1.36168 * 119.25709 * 179.72568 * 14 13 12 16 16 C 1.46504 * 119.84951 * 180.02562 * 15 14 13 17 17 C 1.52996 * 117.50101 * 14.14648 * 16 15 14 18 18 C 1.52997 * 117.49960 * 305.48514 * 16 15 14 19 19 C 1.34568 * 120.29442 * 359.97438 * 15 14 13 20 20 O 1.21981 * 119.47560 * 180.02562 * 19 15 14 21 21 N 1.33271 * 121.05251 * 359.97438 * 19 15 14 22 22 C 1.32430 * 120.72582 * 0.04172 * 21 19 15 23 23 O 1.35163 * 120.16168 * 179.97438 * 22 21 19 24 24 H 0.96990 * 120.00581 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00175 * 359.97438 * 11 9 7 26 26 H 1.09004 * 109.46869 * 60.00044 * 12 11 9 27 27 H 1.08997 * 109.46970 * 299.99791 * 12 11 9 28 28 H 1.07997 * 120.37427 * 359.69521 * 14 13 12 29 29 H 1.09006 * 115.54565 * 159.82023 * 16 15 14 30 30 H 1.08998 * 117.49811 * 0.02562 * 17 16 15 31 31 H 1.09001 * 117.49655 * 145.02147 * 17 16 15 32 32 H 1.09001 * 117.50037 * 214.98560 * 18 16 15 33 33 H 1.09006 * 117.49932 * 0.02562 * 18 16 15 34 34 H 0.96691 * 114.00345 * 359.95444 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4380 2.6528 0.7000 6 1 3.5381 1.4403 0.7002 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2753 -2.4805 0.0005 10 8 0.0584 -2.4805 -0.0004 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1961 -6.0617 0.0018 14 6 2.5648 -6.6508 1.1655 15 7 3.4472 -7.6874 1.1364 16 6 3.8541 -8.3340 2.3865 17 6 3.0249 -8.0377 3.6376 18 6 4.4271 -7.4417 3.4894 19 6 3.9462 -8.1213 -0.0356 20 8 4.7354 -9.0514 -0.0444 21 7 3.5913 -7.5517 -1.1870 22 6 2.7363 -6.5405 -1.2063 23 8 2.3846 -5.9709 -2.3805 24 1 -0.4850 0.8399 -0.0004 25 1 2.9192 -3.6476 0.0020 26 1 0.5911 -4.9744 -0.8897 27 1 0.5891 -4.9740 0.8903 28 1 2.1636 -6.3015 2.1054 29 1 4.2695 -9.3366 2.2836 30 1 2.1764 -7.3620 3.5306 31 1 2.8950 -8.8452 4.3582 32 1 5.2190 -7.8573 4.1124 33 1 4.5008 -6.3735 3.2851 34 1 2.8088 -6.3685 -3.1532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455244671.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:31 Heat of formation + Delta-G solvation = -36.052818 kcal Electronic energy + Delta-G solvation = -21258.059338 eV Core-core repulsion = 17772.192713 eV Total energy + Delta-G solvation = -3485.866626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.98943 -39.06629 -37.75294 -37.30812 -36.27488 -33.83630 -33.22486 -32.42546 -30.76717 -26.95349 -25.68212 -24.76810 -23.36971 -22.78869 -21.55073 -19.81445 -19.71968 -18.35248 -17.76832 -17.11976 -16.40151 -15.64402 -15.38259 -15.18038 -14.84429 -14.42490 -14.23163 -13.99206 -13.94748 -13.38521 -13.25428 -12.61695 -12.53199 -12.12053 -11.97476 -11.49502 -11.24660 -11.14385 -10.95777 -10.90526 -10.75168 -10.49681 -10.26074 -10.04782 -9.87601 -8.88725 -8.60609 -7.63736 -7.58806 -6.22329 -4.68056 0.52754 1.55135 2.15175 3.11925 3.13826 3.18207 3.19349 3.22071 3.73357 3.99600 4.08680 4.20703 4.33009 4.40669 4.45133 4.54896 4.69259 5.02253 5.10039 5.21379 5.24883 5.40080 5.48294 5.58874 5.75399 5.93938 6.24932 6.26627 6.41752 7.04587 7.39962 7.69814 7.85067 8.00512 8.06198 8.27930 8.98994 9.46142 10.55264 10.73430 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021845 B = 0.004254 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.450202 B = 6580.603239 C = 7115.221834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.580 6.580 11 N -0.763 5.763 12 C 0.197 3.803 13 C -0.246 4.246 14 C 0.198 3.802 15 N -0.499 5.499 16 C 0.052 3.948 17 C -0.180 4.180 18 C -0.178 4.178 19 C 0.659 3.341 20 O -0.541 6.541 21 N -0.618 5.618 22 C 0.473 3.527 23 O -0.429 6.429 24 H 0.269 0.731 25 H 0.379 0.621 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.183 0.817 29 H 0.152 0.848 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -12.822 5.386 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.462 6.462 11 N -0.419 5.419 12 C 0.071 3.929 13 C -0.255 4.255 14 C 0.063 3.937 15 N -0.215 5.215 16 C -0.052 4.052 17 C -0.218 4.218 18 C -0.216 4.216 19 C 0.361 3.639 20 O -0.417 6.417 21 N -0.376 5.376 22 C 0.272 3.728 23 O -0.222 6.222 24 H 0.079 0.921 25 H 0.210 0.790 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.199 0.801 29 H 0.170 0.830 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 5.330 -13.393 5.016 15.262 hybrid contribution 0.892 0.861 0.141 1.248 sum 6.222 -12.533 5.157 14.912 Atomic orbital electron populations 1.70007 1.07031 1.27314 1.35267 1.25690 0.94603 1.00242 0.92594 0.86390 0.80133 0.81447 0.78887 1.19719 1.20449 1.18958 1.20867 0.93564 0.89325 1.54398 0.91489 1.18209 0.87188 0.82255 0.76327 1.90608 1.14025 1.86683 1.54923 1.46236 1.08462 1.04237 1.82970 1.19413 0.90796 0.80527 1.02180 1.19748 1.10093 1.06460 0.89202 1.22280 0.86378 0.84724 1.00285 1.45911 1.37254 1.28553 1.09761 1.22163 1.05271 0.99366 0.78438 1.23557 0.95535 1.04444 0.98241 1.23549 0.97230 1.00312 1.00509 1.17319 0.82687 0.84734 0.79125 1.90971 1.36213 1.29307 1.85195 1.69713 1.24341 1.17173 1.26328 1.20355 0.82426 0.83312 0.86712 1.85159 1.65414 1.56484 1.15094 0.92072 0.78978 0.91258 0.92098 0.80053 0.83017 0.87533 0.86701 0.86938 0.87642 0.72974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.41 11.83 55.55 0.66 -21.75 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 19.63 29.56 -169.99 -5.02 14.60 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.54 -14.86 9.54 -35.63 -0.34 -15.20 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 C 0.56 15.06 7.75 -12.99 -0.10 14.95 16 10 O -0.58 -17.96 15.02 5.20 0.08 -17.89 16 11 N -0.76 -15.79 5.54 -62.90 -0.35 -16.14 16 12 C 0.20 3.37 5.57 -5.19 -0.03 3.35 16 13 C -0.25 -3.37 5.25 -104.64 -0.55 -3.92 16 14 C 0.20 2.24 9.45 -16.59 -0.16 2.08 16 15 N -0.50 -6.14 2.95 -114.72 -0.34 -6.48 16 16 C 0.05 0.49 6.26 -67.93 -0.43 0.07 16 17 C -0.18 -1.15 9.80 -26.70 -0.26 -1.41 16 18 C -0.18 -1.30 10.16 -26.70 -0.27 -1.57 16 19 C 0.66 10.63 8.34 -88.44 -0.74 9.89 16 20 O -0.54 -10.24 16.79 4.94 0.08 -10.16 16 21 N -0.62 -9.69 10.40 -16.72 -0.17 -9.86 16 22 C 0.47 6.68 7.89 -16.35 -0.13 6.56 16 23 O -0.43 -5.49 12.79 -17.19 -0.22 -5.71 16 24 H 0.27 7.11 8.29 -40.82 -0.34 6.78 16 25 H 0.38 7.10 8.44 -40.82 -0.34 6.75 16 26 H 0.07 1.31 7.76 -51.93 -0.40 0.91 16 27 H 0.06 1.02 8.06 -51.93 -0.42 0.61 16 28 H 0.18 1.52 6.05 -52.49 -0.32 1.20 16 29 H 0.15 1.49 7.52 -51.93 -0.39 1.10 16 30 H 0.11 0.62 6.24 -51.93 -0.32 0.30 16 31 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.41 3.42 8.98 45.56 0.41 3.83 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -37.83 305.31 -6.38 -44.22 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -2.60 Total: 7.45 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: -3.10 Total: 17.11 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.20 Total: -54.23 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.06 Total: -33.75 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -37.83 -6.38 -44.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455244671.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.163 kcal (2) G-P(sol) polarization free energy of solvation -37.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds