Wall clock time and date at job start Tue Mar 31 2020 01:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86806 * 119.99552 * 2 1 4 4 H 1.48499 * 109.47047 * 269.99160 * 3 2 1 5 5 H 1.48499 * 109.47156 * 29.99631 * 3 2 1 6 6 H 1.48504 * 109.46692 * 149.99367 * 3 2 1 7 7 C 1.40048 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99765 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00164 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99852 * 0.02562 * 9 7 2 11 11 N 1.34770 * 120.00207 * 180.02562 * 9 7 2 12 12 C 1.46503 * 120.00204 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.47036 * 179.97438 * 12 11 9 14 14 C 1.35544 * 120.49688 * 95.00731 * 13 12 11 15 15 N 1.36168 * 119.25709 * 179.72568 * 14 13 12 16 16 C 1.46504 * 119.84951 * 180.02562 * 15 14 13 17 17 C 1.52996 * 117.50101 * 14.14648 * 16 15 14 18 18 C 1.52997 * 117.49960 * 305.48514 * 16 15 14 19 19 C 1.34568 * 120.29442 * 359.97438 * 15 14 13 20 20 O 1.21981 * 119.47560 * 180.02562 * 19 15 14 21 21 N 1.33271 * 121.05251 * 359.97438 * 19 15 14 22 22 C 1.32430 * 120.72582 * 0.04172 * 21 19 15 23 23 O 1.35163 * 120.16168 * 179.97438 * 22 21 19 24 24 H 0.96990 * 120.00581 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00175 * 359.97438 * 11 9 7 26 26 H 1.09004 * 109.46869 * 60.00044 * 12 11 9 27 27 H 1.08997 * 109.46970 * 299.99791 * 12 11 9 28 28 H 1.07997 * 120.37427 * 359.69521 * 14 13 12 29 29 H 1.09006 * 115.54565 * 159.82023 * 16 15 14 30 30 H 1.08998 * 117.49811 * 0.02562 * 17 16 15 31 31 H 1.09001 * 117.49655 * 145.02147 * 17 16 15 32 32 H 1.09001 * 117.50037 * 214.98560 * 18 16 15 33 33 H 1.09006 * 117.49932 * 0.02562 * 18 16 15 34 34 H 0.96691 * 114.00345 * 359.95444 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4380 2.6528 0.7000 6 1 3.5381 1.4403 0.7002 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2753 -2.4805 0.0005 10 8 0.0584 -2.4805 -0.0004 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1961 -6.0617 0.0018 14 6 2.5648 -6.6508 1.1655 15 7 3.4472 -7.6874 1.1364 16 6 3.8541 -8.3340 2.3865 17 6 3.0249 -8.0377 3.6376 18 6 4.4271 -7.4417 3.4894 19 6 3.9462 -8.1213 -0.0356 20 8 4.7354 -9.0514 -0.0444 21 7 3.5913 -7.5517 -1.1870 22 6 2.7363 -6.5405 -1.2063 23 8 2.3846 -5.9709 -2.3805 24 1 -0.4850 0.8399 -0.0004 25 1 2.9192 -3.6476 0.0020 26 1 0.5911 -4.9744 -0.8897 27 1 0.5891 -4.9740 0.8903 28 1 2.1636 -6.3015 2.1054 29 1 4.2695 -9.3366 2.2836 30 1 2.1764 -7.3620 3.5306 31 1 2.8950 -8.8452 4.3582 32 1 5.2190 -7.8573 4.1124 33 1 4.5008 -6.3735 3.2851 34 1 2.8088 -6.3685 -3.1532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455244671.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:31 Heat of formation + Delta-G solvation = -69.648513 kcal Electronic energy + Delta-G solvation = -21259.516157 eV Core-core repulsion = 17772.192713 eV Total energy + Delta-G solvation = -3487.323444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.07151 -40.12903 -39.26120 -38.67563 -37.37178 -35.48847 -34.46634 -34.20870 -32.26119 -28.75794 -26.92816 -26.12914 -24.43092 -23.37200 -22.55668 -21.63607 -20.87398 -19.43917 -19.35549 -18.28626 -17.55792 -17.38399 -16.80626 -16.22831 -15.98042 -15.81582 -15.60557 -15.28154 -15.09539 -14.94745 -14.39859 -14.03299 -13.65538 -13.57479 -13.21226 -13.03888 -12.68626 -12.56030 -12.48396 -12.10249 -11.99027 -11.83481 -11.70417 -11.06425 -10.99331 -10.88933 -9.97607 -9.52071 -9.42023 -8.24066 -6.79768 -0.49570 0.38202 1.16981 1.44121 1.44456 1.59352 2.13172 2.27393 2.36339 2.52822 2.80117 3.08452 3.25532 3.35643 3.46498 3.58806 3.70331 3.83210 3.85215 4.09925 4.24036 4.61963 4.69802 4.84572 4.90419 4.95828 5.01833 5.09962 5.29473 5.37130 5.92386 6.12552 6.24575 6.31244 6.56623 6.91321 6.92664 7.57843 8.54189 8.72310 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021845 B = 0.004254 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.450202 B = 6580.603239 C = 7115.221834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.033 3.967 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.543 3.457 10 O -0.628 6.628 11 N -0.748 5.748 12 C 0.206 3.794 13 C -0.261 4.261 14 C 0.230 3.770 15 N -0.489 5.489 16 C 0.016 3.984 17 C -0.154 4.154 18 C -0.171 4.171 19 C 0.651 3.349 20 O -0.581 6.581 21 N -0.640 5.640 22 C 0.476 3.524 23 O -0.436 6.436 24 H 0.274 0.726 25 H 0.391 0.609 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.219 0.781 29 H 0.143 0.857 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 -12.325 7.076 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.182 4.182 3 Si 0.812 3.188 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.609 4.609 8 H 0.102 0.898 9 C 0.347 3.653 10 O -0.515 6.515 11 N -0.403 5.403 12 C 0.081 3.919 13 C -0.270 4.270 14 C 0.093 3.907 15 N -0.202 5.202 16 C -0.088 4.088 17 C -0.191 4.191 18 C -0.208 4.208 19 C 0.353 3.647 20 O -0.459 6.459 21 N -0.399 5.399 22 C 0.276 3.724 23 O -0.232 6.232 24 H 0.084 0.916 25 H 0.224 0.776 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.236 0.764 29 H 0.160 0.840 30 H 0.136 0.864 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.121 0.879 34 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 6.461 -12.936 6.708 15.940 hybrid contribution 0.560 0.598 -0.351 0.891 sum 7.021 -12.337 6.357 15.554 Atomic orbital electron populations 1.70163 1.09339 1.28842 1.36610 1.26856 0.95436 1.04628 0.91312 0.85105 0.78867 0.75623 0.79238 1.19013 1.19826 1.17346 1.21407 0.94616 0.90215 1.54707 0.89777 1.18472 0.86756 0.84068 0.75973 1.90567 1.16018 1.87848 1.57095 1.45860 1.08971 1.04208 1.81245 1.19295 0.91121 0.79916 1.01576 1.19371 1.10971 1.06493 0.90140 1.22691 0.84222 0.82913 1.00844 1.45875 1.36184 1.28112 1.10020 1.22443 1.08672 0.99596 0.78045 1.23740 0.95155 1.04604 0.95582 1.23659 0.98640 0.99734 0.98792 1.17433 0.82618 0.84543 0.80121 1.90934 1.38071 1.31019 1.85916 1.69624 1.25345 1.18009 1.26888 1.20367 0.81948 0.82860 0.87198 1.85141 1.65654 1.56695 1.15674 0.91622 0.77632 0.93312 0.91334 0.76447 0.83970 0.86421 0.84487 0.85414 0.87889 0.70999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.59 11.83 21.84 0.26 -48.33 16 2 C 0.03 1.78 5.50 85.30 0.47 2.25 16 3 Si 0.99 39.65 29.56 68.60 2.03 41.68 16 4 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 6 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.57 -31.09 9.54 24.83 0.24 -30.85 16 8 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 9 C 0.54 29.65 7.75 86.36 0.67 30.32 16 10 O -0.63 -39.85 15.02 -4.32 -0.06 -39.91 16 11 N -0.75 -30.56 5.54 -471.15 -2.61 -33.17 16 12 C 0.21 6.94 5.57 85.63 0.48 7.42 16 13 C -0.26 -6.81 5.25 -19.88 -0.10 -6.91 16 14 C 0.23 4.63 9.45 83.40 0.79 5.41 16 15 N -0.49 -11.26 2.95 -635.07 -1.88 -13.14 16 16 C 0.02 0.26 6.26 44.99 0.28 0.54 16 17 C -0.15 -1.36 9.80 30.62 0.30 -1.06 16 18 C -0.17 -1.96 10.16 30.62 0.31 -1.64 16 19 C 0.65 20.83 8.34 179.59 1.50 22.32 16 20 O -0.58 -22.29 16.79 -5.25 -0.09 -22.38 16 21 N -0.64 -20.00 10.40 -438.81 -4.56 -24.56 16 22 C 0.48 13.23 7.89 85.21 0.67 13.90 16 23 O -0.44 -11.13 12.79 -84.41 -1.08 -12.21 16 24 H 0.27 14.72 8.29 -92.72 -0.77 13.96 16 25 H 0.39 14.17 8.44 -92.71 -0.78 13.38 16 26 H 0.05 1.87 7.76 -2.38 -0.02 1.85 16 27 H 0.07 2.22 8.06 -2.39 -0.02 2.20 16 28 H 0.22 2.75 6.05 -2.91 -0.02 2.73 16 29 H 0.14 2.69 7.52 -2.38 -0.02 2.67 16 30 H 0.12 0.82 6.24 -2.39 -0.01 0.80 16 31 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.43 7.10 8.98 -74.06 -0.66 6.43 16 Total: -1.00 -84.53 305.31 -2.67 -87.19 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.26 Total: 23.13 kcal Atomic # 6 Polarization: 36.10 SS G_CDS: 5.60 Total: 41.69 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -8.79 Total: -119.20 kcal Atomic # 8 Polarization: -73.27 SS G_CDS: -1.23 Total: -74.50 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -84.53 -2.67 -87.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455244671.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.546 kcal (2) G-P(sol) polarization free energy of solvation -84.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds