Wall clock time and date at job start Tue Mar 31 2020 00:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34665 * 116.99896 * 2 1 4 4 O 1.21434 * 120.00415 * 359.97438 * 3 2 1 5 5 C 1.48048 * 119.99984 * 179.97438 * 3 2 1 6 6 C 1.39847 * 120.89092 * 359.97438 * 5 3 2 7 7 C 1.38529 * 119.19013 * 180.02562 * 6 5 3 8 8 N 1.31440 * 121.04123 * 359.97438 * 7 6 5 9 9 C 1.32695 * 121.97600 * 0.02562 * 8 7 6 10 10 C 1.48069 * 119.65949 * 179.97438 * 9 8 7 11 11 O 1.21434 * 119.99882 * 179.97438 * 10 9 8 12 12 O 1.34675 * 120.00257 * 0.02562 * 10 9 8 13 13 C 1.45194 * 117.00462 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46869 * 30.00304 * 13 12 10 15 15 C 1.52997 * 109.47339 * 269.99822 * 13 12 10 16 16 C 1.50706 * 109.47297 * 149.99440 * 13 12 10 17 17 H 1.07998 * 119.99629 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99955 * 179.97438 * 16 13 12 19 19 N 1.31510 * 120.00308 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 13 21 21 H 1.48507 * 109.46754 * 90.00468 * 20 18 16 22 22 H 1.48498 * 109.47278 * 210.00299 * 20 18 16 23 23 H 1.48498 * 109.47109 * 330.00728 * 20 18 16 24 24 C 1.39282 * 120.68498 * 0.27093 * 9 8 7 25 25 H 1.09003 * 109.46706 * 60.00527 * 1 2 3 26 26 H 1.08997 * 109.46814 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47137 * 300.00743 * 1 2 3 28 28 H 1.08003 * 120.40780 * 0.02562 * 6 5 3 29 29 H 1.07997 * 119.47742 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47153 * 59.99705 * 15 13 12 31 31 H 1.09001 * 109.46832 * 299.99896 * 15 13 12 32 32 H 1.09004 * 109.47261 * 179.97438 * 15 13 12 33 33 H 0.96998 * 120.00365 * 179.97438 * 19 18 16 34 34 H 1.08000 * 120.55782 * 179.72757 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4021 2.2184 -0.0005 5 6 3.5419 1.2774 0.0006 6 6 4.3217 0.1165 0.0017 7 6 5.7023 0.2301 0.0027 8 7 6.2855 1.4080 0.0022 9 6 5.5885 2.5372 0.0012 10 6 6.2986 3.8365 0.0012 11 8 5.6669 4.8736 -0.0002 12 8 7.6450 3.8682 0.0018 13 6 8.2737 5.1769 0.0012 14 1 7.6286 5.8901 0.5143 15 6 8.4952 5.6357 -1.4415 16 6 9.6000 5.0975 0.7123 17 1 9.9369 4.1572 1.1232 18 6 10.3838 6.2249 0.8375 19 7 9.9738 7.3697 0.3367 20 14 12.0281 6.1262 1.7183 21 1 13.0949 5.7959 0.7394 22 1 12.3279 7.4339 2.3548 23 1 11.9686 5.0703 2.7607 24 6 4.1959 2.5129 0.0062 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.8533 -0.8566 0.0017 29 1 6.3090 -0.6634 0.0031 30 1 7.5359 5.6932 -1.9558 31 1 9.1403 4.9225 -1.9545 32 1 8.9668 6.6185 -1.4419 33 1 10.5250 8.1629 0.4250 34 1 3.6307 3.4332 0.0098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524671662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:59 Heat of formation + Delta-G solvation = -128.870983 kcal Electronic energy + Delta-G solvation = -20720.023465 eV Core-core repulsion = 17197.839191 eV Total energy + Delta-G solvation = -3522.184274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16603 -40.16825 -38.99629 -36.85976 -35.80273 -33.43294 -33.05994 -31.71645 -29.54241 -28.33852 -25.54630 -25.28419 -24.60883 -22.38584 -21.40390 -20.00861 -18.46725 -17.81938 -16.93745 -16.77763 -16.69067 -16.02693 -15.63903 -15.61521 -15.26674 -14.69643 -14.35963 -14.04654 -13.92144 -13.45428 -13.07220 -12.62938 -12.26698 -12.16852 -11.85100 -11.23267 -11.22351 -11.13150 -11.06327 -10.81964 -10.38226 -10.31862 -10.29506 -10.16139 -9.65777 -9.57060 -9.45955 -8.90215 -8.47726 -6.16541 -4.23046 0.15595 0.54951 2.12527 2.12854 2.85413 3.24816 3.27364 3.33326 3.40498 3.76907 4.13026 4.16742 4.35094 4.53292 4.66013 4.71735 4.77551 4.80425 5.11016 5.16615 5.29800 5.38806 5.57167 5.72473 5.89130 6.21325 6.61973 6.89436 6.90124 7.08958 7.27587 7.51007 7.61278 7.71640 7.90602 8.13591 8.55473 8.87740 9.41937 10.91094 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.038745 B = 0.003395 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.498740 B = 8246.004015 C = 8650.012627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.513 3.487 4 O -0.490 6.490 5 C -0.091 4.091 6 C -0.097 4.097 7 C 0.091 3.909 8 N -0.404 5.404 9 C 0.106 3.894 10 C 0.509 3.491 11 O -0.505 6.505 12 O -0.326 6.326 13 C 0.212 3.788 14 H 0.049 0.951 15 C -0.155 4.155 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.913 3.087 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.053 4.053 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.156 0.844 29 H 0.175 0.825 30 H 0.016 0.984 31 H 0.039 0.961 32 H 0.101 0.899 33 H 0.266 0.734 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 -17.125 -1.327 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.356 3.644 4 O -0.376 6.376 5 C -0.100 4.100 6 C -0.117 4.117 7 C -0.069 4.069 8 N -0.116 5.116 9 C -0.031 4.031 10 C 0.350 3.650 11 O -0.394 6.394 12 O -0.241 6.241 13 C 0.160 3.840 14 H 0.066 0.934 15 C -0.213 4.213 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.740 3.260 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.074 4.074 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.174 0.826 29 H 0.192 0.808 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.434 -16.184 -1.343 21.727 hybrid contribution -0.334 0.115 0.372 0.514 sum -14.768 -16.068 -0.970 21.845 Atomic orbital electron populations 1.23352 0.75311 1.04049 1.02991 1.86509 1.24032 1.32098 1.84243 1.20942 0.88490 0.81795 0.73179 1.90887 1.66388 1.35947 1.44419 1.19300 0.89994 0.94526 1.06181 1.22785 0.95372 0.99143 0.94422 1.23044 0.91823 0.95756 0.96272 1.67675 1.40867 0.97928 1.05154 1.20461 0.89661 0.91943 1.01017 1.20474 0.83691 0.86812 0.73989 1.90817 1.68652 1.33661 1.46292 1.86662 1.17028 1.40053 1.80324 1.20782 0.92389 0.75872 0.94976 0.93364 1.22176 0.98545 1.04194 0.96393 1.21024 1.01770 0.96549 1.36338 0.91090 1.24887 0.98727 0.94777 0.95621 1.69896 1.38115 0.99898 1.44891 0.86247 0.82564 0.77528 0.79642 1.20338 1.21009 1.19582 1.22241 0.94125 0.98832 0.92164 0.91535 0.87651 0.91533 0.82600 0.80787 0.96473 0.94233 0.88079 0.92389 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.15 9.91 -40.40 -0.40 -3.55 16 3 C 0.51 5.99 7.92 34.75 0.28 6.26 16 4 O -0.49 -7.06 16.23 -19.22 -0.31 -7.37 16 5 C -0.09 -1.08 5.91 -104.69 -0.62 -1.70 16 6 C -0.10 -0.89 9.71 -38.87 -0.38 -1.27 16 7 C 0.09 0.97 11.17 -17.61 -0.20 0.77 16 8 N -0.40 -6.43 10.09 -9.86 -0.10 -6.53 16 9 C 0.11 1.85 6.75 -83.07 -0.56 1.29 16 10 C 0.51 11.27 7.92 34.76 0.28 11.54 16 11 O -0.50 -12.08 15.58 -19.22 -0.30 -12.38 16 12 O -0.33 -8.14 9.68 -40.43 -0.39 -8.53 16 13 C 0.21 5.81 2.56 -27.88 -0.07 5.74 16 14 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 15 C -0.16 -4.01 9.33 37.16 0.35 -3.66 16 16 C -0.52 -14.80 8.90 -34.44 -0.31 -15.11 16 17 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 20 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.05 -0.79 9.20 -38.61 -0.36 -1.15 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.16 0.88 7.70 -52.48 -0.40 0.48 16 29 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 2.76 6.07 -51.93 -0.32 2.44 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.16 2.53 7.33 -52.49 -0.38 2.15 16 LS Contribution 312.03 15.07 4.70 4.70 Total: -1.00 -33.42 312.03 -5.37 -38.79 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.56 Total: -2.21 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.62 Total: 5.64 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.53 Total: -31.37 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.40 Total: -31.83 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.42 -5.37 -38.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524671662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.082 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds