Wall clock time and date at job start Tue Mar 31 2020 00:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34663 * 116.99931 * 2 1 4 4 O 1.21434 * 120.00194 * 0.02562 * 3 2 1 5 5 C 1.48044 * 119.99867 * 179.97438 * 3 2 1 6 6 C 1.39852 * 120.89478 * 0.02562 * 5 3 2 7 7 C 1.38523 * 119.19100 * 179.97438 * 6 5 3 8 8 N 1.31441 * 121.04359 * 359.97438 * 7 6 5 9 9 C 1.32699 * 121.97721 * 0.02562 * 8 7 6 10 10 C 1.48063 * 119.66445 * 179.97438 * 9 8 7 11 11 O 1.21432 * 120.00727 * 180.02562 * 10 9 8 12 12 O 1.34687 * 119.99379 * 359.97438 * 10 9 8 13 13 C 1.45206 * 116.99357 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47146 * 329.99265 * 13 12 10 15 15 C 1.52997 * 109.47226 * 90.00238 * 13 12 10 16 16 C 1.50706 * 109.46448 * 210.00030 * 13 12 10 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 12 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 13 20 20 Si 1.86789 * 120.00458 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47356 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.47162 * 209.99853 * 20 18 16 23 23 H 1.48503 * 109.47180 * 329.99546 * 20 18 16 24 24 C 1.39287 * 120.68155 * 0.25454 * 9 8 7 25 25 H 1.08997 * 109.46824 * 59.99812 * 1 2 3 26 26 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47176 * 299.99813 * 1 2 3 28 28 H 1.08001 * 120.40135 * 0.02562 * 6 5 3 29 29 H 1.07994 * 119.47508 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47153 * 299.99431 * 15 13 12 31 31 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 32 32 H 1.09004 * 109.47261 * 59.99603 * 15 13 12 33 33 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 34 34 H 1.07998 * 120.55523 * 179.74286 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5418 1.2773 0.0006 6 6 4.3217 0.1165 0.0006 7 6 5.7023 0.2300 0.0006 8 7 6.2855 1.4080 0.0001 9 6 5.5886 2.5372 0.0000 10 6 6.2985 3.8365 0.0000 11 8 5.6669 4.8737 0.0005 12 8 7.6450 3.8680 0.0006 13 6 8.2737 5.1770 0.0011 14 1 7.6290 5.8898 -0.5129 15 6 8.4939 5.6364 1.4438 16 6 9.6006 5.0971 -0.7088 17 1 9.9379 4.1566 -1.1190 18 6 10.3840 6.2247 -0.8347 19 7 11.5422 6.1549 -1.4538 20 14 9.8010 7.8511 -0.1248 21 1 10.2774 7.9790 1.2759 22 1 10.3450 8.9691 -0.9368 23 1 8.3169 7.8982 -0.1490 24 6 4.1959 2.5129 0.0059 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8533 -0.8567 -0.0002 29 1 6.3090 -0.6634 0.0010 30 1 7.5342 5.6941 1.9573 31 1 8.9662 6.6188 1.4441 32 1 9.1387 4.9234 1.9577 33 1 12.0935 6.9481 -1.5421 34 1 3.6307 3.4332 0.0100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524671663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:01 Heat of formation + Delta-G solvation = -118.873754 kcal Electronic energy + Delta-G solvation = -20789.445161 eV Core-core repulsion = 17267.694399 eV Total energy + Delta-G solvation = -3521.750762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23051 -40.26970 -39.18584 -36.90472 -36.04531 -33.46655 -33.04859 -31.81258 -30.55086 -28.38195 -25.67809 -25.25318 -24.69098 -22.48998 -21.50580 -20.11242 -18.61122 -17.91934 -17.12074 -16.82025 -16.71427 -16.08948 -16.04237 -15.72472 -15.45596 -14.85407 -14.42995 -14.11324 -13.96369 -13.53134 -13.09421 -12.80410 -12.64102 -12.31811 -12.26703 -11.87729 -11.53681 -11.26239 -11.17969 -10.89404 -10.42686 -10.38173 -10.21544 -9.86362 -9.80840 -9.60923 -9.54771 -9.12586 -8.67802 -6.21071 -4.23460 0.09018 0.47372 2.06469 2.07718 2.72352 3.10970 3.19846 3.32160 3.34173 3.66414 4.07126 4.10814 4.27698 4.47101 4.59209 4.65027 4.69518 4.77193 5.07358 5.09488 5.19029 5.32638 5.46237 5.59127 5.84115 6.09281 6.15909 6.27373 6.38783 6.56015 6.96986 7.22768 7.26131 7.46093 7.50405 8.15866 8.52288 8.87187 9.35396 10.91020 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.038115 B = 0.003587 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.437812 B = 7803.874495 C = 8290.733587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.513 3.487 4 O -0.490 6.490 5 C -0.091 4.091 6 C -0.094 4.094 7 C 0.092 3.908 8 N -0.403 5.403 9 C 0.104 3.896 10 C 0.511 3.489 11 O -0.506 6.506 12 O -0.311 6.311 13 C 0.188 3.812 14 H 0.048 0.952 15 C -0.170 4.170 16 C -0.524 4.524 17 H 0.089 0.911 18 C 0.080 3.920 19 N -0.888 5.888 20 Si 0.879 3.121 21 H -0.273 1.273 22 H -0.290 1.290 23 H -0.262 1.262 24 C -0.052 4.052 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.157 0.843 29 H 0.177 0.823 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.269 0.731 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.278 -14.930 4.159 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.356 3.644 4 O -0.377 6.377 5 C -0.100 4.100 6 C -0.115 4.115 7 C -0.067 4.067 8 N -0.115 5.115 9 C -0.033 4.033 10 C 0.352 3.648 11 O -0.395 6.395 12 O -0.225 6.225 13 C 0.134 3.866 14 H 0.066 0.934 15 C -0.228 4.228 16 C -0.561 4.561 17 H 0.107 0.893 18 C -0.123 4.123 19 N -0.525 5.525 20 Si 0.708 3.292 21 H -0.199 1.199 22 H -0.217 1.217 23 H -0.187 1.187 24 C -0.073 4.073 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.175 0.825 29 H 0.194 0.806 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.571 -14.091 4.091 23.668 hybrid contribution -1.286 0.985 0.384 1.665 sum -19.858 -13.106 4.475 24.210 Atomic orbital electron populations 1.23358 0.75254 1.04092 1.02992 1.86509 1.24072 1.32052 1.84204 1.20925 0.88464 0.81818 0.73180 1.90887 1.66385 1.35961 1.44445 1.19301 0.90047 0.94495 1.06153 1.22812 0.95369 0.99203 0.94080 1.23060 0.91832 0.95735 0.96109 1.67673 1.40833 0.97933 1.05016 1.20326 0.89614 0.91761 1.01579 1.20550 0.83460 0.87067 0.73681 1.90815 1.68623 1.33696 1.46391 1.86698 1.17192 1.38093 1.80516 1.21065 0.93838 0.77728 0.93953 0.93439 1.22536 1.00199 1.01319 0.98717 1.20770 1.00086 0.98744 1.36518 0.89260 1.24723 0.94508 0.98390 0.94720 1.69839 1.10940 1.29999 1.41680 0.86980 0.79976 0.83501 0.78787 1.19950 1.21660 1.18668 1.22223 0.94017 0.98875 0.92141 0.91516 0.87615 0.91533 0.82498 0.80645 0.94361 0.92393 0.91568 0.92054 0.81761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.00 9.91 -40.39 -0.40 -3.40 16 3 C 0.51 5.72 7.92 34.75 0.28 5.99 16 4 O -0.49 -6.79 16.23 -19.22 -0.31 -7.10 16 5 C -0.09 -1.03 5.91 -104.69 -0.62 -1.64 16 6 C -0.09 -0.82 9.71 -38.87 -0.38 -1.19 16 7 C 0.09 0.94 11.17 -17.61 -0.20 0.75 16 8 N -0.40 -6.18 10.09 -9.87 -0.10 -6.27 16 9 C 0.10 1.73 6.75 -83.07 -0.56 1.17 16 10 C 0.51 10.68 7.92 34.76 0.28 10.95 16 11 O -0.51 -11.29 15.58 -19.21 -0.30 -11.59 16 12 O -0.31 -7.41 9.68 -40.46 -0.39 -7.80 16 13 C 0.19 4.82 2.15 -27.88 -0.06 4.76 16 14 H 0.05 1.27 6.22 -51.93 -0.32 0.94 16 15 C -0.17 -3.93 9.03 37.16 0.34 -3.60 16 16 C -0.52 -15.19 9.48 -34.44 -0.33 -15.52 16 17 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 18 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 19 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 20 Si 0.88 21.73 24.37 -169.99 -4.14 17.59 16 21 H -0.27 -6.46 6.87 56.52 0.39 -6.07 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 24 C -0.05 -0.74 9.20 -38.61 -0.36 -1.09 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.16 0.82 7.70 -52.49 -0.40 0.41 16 29 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.35 3.27 -51.93 -0.17 1.18 16 32 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.16 2.38 7.33 -52.49 -0.38 1.99 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -34.35 305.22 -4.33 -38.68 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -3.42 Total: -2.68 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -0.64 Total: 4.06 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.67 Total: -32.36 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.40 Total: -29.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.35 -4.33 -38.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524671663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.194 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds