Wall clock time and date at job start Tue Mar 31 2020 00:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34663 * 116.99931 * 2 1 4 4 O 1.21434 * 120.00194 * 0.02562 * 3 2 1 5 5 C 1.48044 * 119.99867 * 179.97438 * 3 2 1 6 6 C 1.39852 * 120.89478 * 0.02562 * 5 3 2 7 7 C 1.38523 * 119.19100 * 179.97438 * 6 5 3 8 8 N 1.31441 * 121.04359 * 359.97438 * 7 6 5 9 9 C 1.32699 * 121.97721 * 0.02562 * 8 7 6 10 10 C 1.48063 * 119.66445 * 179.97438 * 9 8 7 11 11 O 1.21432 * 120.00727 * 180.02562 * 10 9 8 12 12 O 1.34687 * 119.99379 * 359.97438 * 10 9 8 13 13 C 1.45206 * 116.99357 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47146 * 329.99265 * 13 12 10 15 15 C 1.52997 * 109.47226 * 90.00238 * 13 12 10 16 16 C 1.50706 * 109.46448 * 210.00030 * 13 12 10 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 12 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 13 20 20 Si 1.86789 * 120.00458 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47356 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.47162 * 209.99853 * 20 18 16 23 23 H 1.48503 * 109.47180 * 329.99546 * 20 18 16 24 24 C 1.39287 * 120.68155 * 0.25454 * 9 8 7 25 25 H 1.08997 * 109.46824 * 59.99812 * 1 2 3 26 26 H 1.08999 * 109.46863 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47176 * 299.99813 * 1 2 3 28 28 H 1.08001 * 120.40135 * 0.02562 * 6 5 3 29 29 H 1.07994 * 119.47508 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47153 * 299.99431 * 15 13 12 31 31 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 32 32 H 1.09004 * 109.47261 * 59.99603 * 15 13 12 33 33 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 34 34 H 1.07998 * 120.55523 * 179.74286 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5418 1.2773 0.0006 6 6 4.3217 0.1165 0.0006 7 6 5.7023 0.2300 0.0006 8 7 6.2855 1.4080 0.0001 9 6 5.5886 2.5372 0.0000 10 6 6.2985 3.8365 0.0000 11 8 5.6669 4.8737 0.0005 12 8 7.6450 3.8680 0.0006 13 6 8.2737 5.1770 0.0011 14 1 7.6290 5.8898 -0.5129 15 6 8.4939 5.6364 1.4438 16 6 9.6006 5.0971 -0.7088 17 1 9.9379 4.1566 -1.1190 18 6 10.3840 6.2247 -0.8347 19 7 11.5422 6.1549 -1.4538 20 14 9.8010 7.8511 -0.1248 21 1 10.2774 7.9790 1.2759 22 1 10.3450 8.9691 -0.9368 23 1 8.3169 7.8982 -0.1490 24 6 4.1959 2.5129 0.0059 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8533 -0.8567 -0.0002 29 1 6.3090 -0.6634 0.0010 30 1 7.5342 5.6941 1.9573 31 1 8.9662 6.6188 1.4441 32 1 9.1387 4.9234 1.9577 33 1 12.0935 6.9481 -1.5421 34 1 3.6307 3.4332 0.0100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524671663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:00 Heat of formation + Delta-G solvation = -142.952186 kcal Electronic energy + Delta-G solvation = -20790.489280 eV Core-core repulsion = 17267.694399 eV Total energy + Delta-G solvation = -3522.794881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.23724 -41.47102 -40.51121 -37.83604 -37.69427 -35.34413 -34.27522 -33.03170 -32.42498 -28.96132 -27.40381 -26.75663 -25.73094 -23.76640 -22.83400 -21.62510 -19.89702 -19.02511 -18.76367 -18.24621 -17.63159 -17.56613 -17.16085 -16.96472 -16.77034 -16.53328 -15.51160 -15.27239 -14.97358 -14.70725 -14.59903 -14.36164 -14.27727 -13.76896 -13.58971 -13.28564 -12.96718 -12.87290 -12.25712 -12.07937 -12.02095 -11.90190 -11.73913 -11.59007 -11.36232 -11.27788 -10.85098 -10.83064 -10.53404 -8.45100 -6.54449 -0.87947 -0.54747 1.05068 1.23587 1.24553 1.31352 1.41029 1.46373 1.70032 2.19491 2.56847 2.87019 2.98856 3.31089 3.56247 3.58548 3.61147 4.08713 4.21089 4.28448 4.34320 4.35980 4.40289 4.48076 4.51914 4.67800 4.71082 4.76263 5.10216 5.13879 5.26673 5.29946 5.47732 6.05258 6.42375 6.45146 6.50778 6.77327 7.09398 8.71018 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.038115 B = 0.003587 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.437812 B = 7803.874495 C = 8290.733587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.341 6.341 3 C 0.520 3.480 4 O -0.525 6.525 5 C -0.097 4.097 6 C -0.049 4.049 7 C 0.101 3.899 8 N -0.439 5.439 9 C 0.073 3.927 10 C 0.506 3.494 11 O -0.530 6.530 12 O -0.328 6.328 13 C 0.189 3.811 14 H 0.034 0.966 15 C -0.164 4.164 16 C -0.540 4.540 17 H 0.046 0.954 18 C 0.031 3.969 19 N -0.929 5.929 20 Si 0.941 3.059 21 H -0.249 1.249 22 H -0.281 1.281 23 H -0.257 1.257 24 C -0.052 4.052 25 H 0.063 0.937 26 H 0.143 0.857 27 H 0.064 0.936 28 H 0.208 0.792 29 H 0.220 0.780 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.276 0.724 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.242 -16.955 5.287 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.257 6.257 3 C 0.364 3.636 4 O -0.414 6.414 5 C -0.105 4.105 6 C -0.069 4.069 7 C -0.060 4.060 8 N -0.152 5.152 9 C -0.061 4.061 10 C 0.350 3.650 11 O -0.421 6.421 12 O -0.243 6.243 13 C 0.135 3.865 14 H 0.052 0.948 15 C -0.221 4.221 16 C -0.578 4.578 17 H 0.065 0.935 18 C -0.169 4.169 19 N -0.567 5.567 20 Si 0.765 3.235 21 H -0.174 1.174 22 H -0.208 1.208 23 H -0.181 1.181 24 C -0.073 4.073 25 H 0.082 0.918 26 H 0.161 0.839 27 H 0.083 0.917 28 H 0.225 0.775 29 H 0.237 0.763 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.549 -16.134 5.227 26.644 hybrid contribution -0.786 1.312 -0.039 1.530 sum -21.335 -14.822 5.187 26.491 Atomic orbital electron populations 1.23710 0.73435 1.06468 1.02852 1.86495 1.25701 1.30098 1.83391 1.20848 0.88208 0.82157 0.72361 1.90883 1.67025 1.37317 1.46184 1.19380 0.90625 0.94253 1.06284 1.23346 0.94430 1.00138 0.88995 1.23854 0.93116 0.95106 0.93941 1.67563 1.42172 0.99017 1.06409 1.19694 0.89910 0.90428 1.06029 1.21337 0.82238 0.88952 0.72434 1.90772 1.68553 1.35142 1.47606 1.86676 1.19303 1.36879 1.81411 1.20789 0.91929 0.78657 0.95134 0.94790 1.22421 1.01463 1.01316 0.96899 1.20904 1.01978 0.97463 1.37408 0.93546 1.25568 0.94351 1.02199 0.94765 1.69958 1.12294 1.31577 1.42872 0.85976 0.79739 0.78476 0.79277 1.17357 1.20792 1.18140 1.22039 0.92849 0.99897 0.92505 0.91784 0.83930 0.91692 0.77550 0.76342 0.92329 0.92216 0.91048 0.91436 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.34 -4.57 9.91 -55.72 -0.55 -5.12 16 3 C 0.52 10.49 7.92 70.42 0.56 11.05 16 4 O -0.52 -14.20 16.23 20.05 0.33 -13.87 16 5 C -0.10 -1.97 5.91 -19.91 -0.12 -2.08 16 6 C -0.05 -0.63 9.71 22.73 0.22 -0.41 16 7 C 0.10 1.70 11.17 84.82 0.95 2.65 16 8 N -0.44 -13.12 10.09 -185.12 -1.87 -14.99 16 9 C 0.07 2.49 6.75 41.87 0.28 2.77 16 10 C 0.51 22.07 7.92 70.43 0.56 22.62 16 11 O -0.53 -24.64 15.58 20.06 0.31 -24.33 16 12 O -0.33 -16.30 9.68 -55.97 -0.54 -16.84 16 13 C 0.19 9.97 2.15 29.85 0.06 10.04 16 14 H 0.03 1.87 6.22 -2.39 -0.01 1.86 16 15 C -0.16 -7.50 9.03 71.98 0.65 -6.85 16 16 C -0.54 -32.68 9.48 25.60 0.24 -32.44 16 17 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 18 C 0.03 1.83 5.45 84.66 0.46 2.29 16 19 N -0.93 -57.65 13.96 21.45 0.30 -57.36 16 20 Si 0.94 44.77 24.37 68.60 1.67 46.45 16 21 H -0.25 -10.85 6.87 99.48 0.68 -10.17 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.26 -11.98 6.53 99.48 0.65 -11.33 16 24 C -0.05 -1.48 9.20 22.90 0.21 -1.27 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.21 0.68 7.70 -2.91 -0.02 0.66 16 29 H 0.22 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 2.68 3.27 -2.39 -0.01 2.67 16 32 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 33 H 0.28 15.76 8.31 -92.70 -0.77 14.98 16 34 H 0.15 4.58 7.33 -2.91 -0.02 4.56 16 Total: -1.00 -79.71 305.22 5.98 -73.72 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.06 Total: 2.54 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.28 Total: 9.80 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -1.57 Total: -72.34 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -0.46 Total: -60.17 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.67 Total: 46.45 kcal Total: -79.71 5.98 -73.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524671663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.228 kcal (2) G-P(sol) polarization free energy of solvation -79.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds